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EGene - Automated Pipeline Generation System

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How to install EGene

  1. Gunzip and untar the package:
  2. gzip -dc egene_1.0.tar.gz | tar xvf -

    This will create a directory named egene.

  3. Go to the egene directory:
  4. cd egene
  5. Run the configuration script:
  6. perl Makefile.PL PREFIX=/path/to/a/install_directory

    The "PREFIX" switch corresponds to the complete path to the directory where EGene should be installed.The default value is

    /usr/local/
    .

    Note: some warning messages can be displayed at this moment:

    "Warning: prerequisite DBD::Pg failed to load" -> don't worry, DBD::Pg is optional

    "Warning: prerequisite GD failed to load" -> you have to install the GD graphics library (http://www.boutell.com/gd) in your server.

  7. Run make
  8. make

    The command make will configure the perl scripts.

  9. Run make install
  10. make install
  11. Update the PERL5LIB and the PATH environment variables.
    1. Add the following lines to your
      export PATH=/path/to/a/install_directory/bin
      
      export PERL5LIB=directory of your PER5LIB
      
      or...
    2. Type
      PATH=/path/to/a/install_directory/bin:$PATH
      
      every time you open a shell (bash) to run the pipeline. Enjoy your EGene system!!

Enjoy your EGene system!!



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 ©2004 - Alan M. Durham and Arthur Gruber