TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: 97739982 P. falciparum 3D7 GENOMIC chr8 Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 1323195 ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40 Found at i: i:219911 original size:9 final size:9 Alignment explanation
Indices: 219878--219912 Score: 42 Period size: 9 Copynumber: 3.9 Consensus size: 9 219868 AAAGAAATTC * 219878 ATAAAAATA 1 ATAACAATA * * 219887 ATAATAATG 1 ATAACAATA 219896 ATAACAATA 1 ATAACAATA * 219905 ATGACAAT 1 ATAACAAT 219913 TTTAATATTC Statistics Matches: 21, Mismatches: 5, Indels: 0 0.81 0.19 0.00 Matches are distributed among these distances: 9 21 1.00 ACGTcount: A:0.63, C:0.06, G:0.06, T:0.26 Consensus pattern (9 bp): ATAACAATA Left flanking sequence: Indices 219378 -- 219877 TCACATAAATAAATCAGAAAAGGTATTTAATACAAATGAAAAACGAATTAATGTAACTGTGGGTA CAAGTAATTATAATTTATCTAATAATATTAAATTACCACAAACGCATATGGAAAATGTAAGATAT GTATCAACAGAAAAGCAGCATAATATTATAAAAATATGTATTGATACATTATATTTTTTCAAAGG ATATAATTCACATTTATGTTTAAGTATATTAAGTATTATTGAATATTTAACTACTACATATAATA ATGTGGTTTTTTTTATAACTTATTCTCCTCCAAATATTTATAAAGATTTTAAAAAGGTTTTTCAA ATAGAAGAACAAATGCGACAAATGAATAGAAGAAAGAATCTAAATCAAAATGATGATAATCAAAA GAGTTTCGATAAATTTCATGTAAATAATAATGTAATAATTAATGCATCAACAAAGAAAGCCAAGG AGGAACTGATTAGTAATAACGACATAAATGTGGAAAAAGAAATTC Right flanking sequence: Indices 219913 -- 220412 TTTAATATTCCTCCATTTTATTCAGTTGATGGTTTTAAGGGAGAAAATTCCAATTTTTATGAACA AAAATTATCATATTTTGATTTAAATGATTTAATATTAAATAATATGAGTAGAAACAGTTTAGGTA TAATATTAAGCATTTCAAAACAAGTTAAGTTTAAAGATATGCTAATATTATTAATAAGTATATTA CTTCAGTGCTTTACAGATAATTATGTTATAGCTAATAGAATGGAATCTAATTTAAAATCATATTT TGCATCTCATGGTATACCTGTTAAATGCTTTATGAAAAAGGATGATTTGGAGGTTATTGAAAACC CTAAATTCGCCAATGCTTTAGGGGTATCATTAAGTGAATTAAATGAAGCATTATATCCATTCATA TTTAAAAACCCACAAATTTATGAAGATATATTAAGTTGTTTGTGTTTTTTCCCAAATTTAAAATA TATTAAGAAAAGTGAAACAAATGATTTAGAGAAATTTGGTATTAA Found at i:220284 original size:9 final size:9 Alignment explanation
Indices: 220266--220284 Score: 31 Period size: 9 Copynumber: 2.1 Consensus size: 9 220256 TAGGGGTATC * 220266 ATTAAGTGA 1 ATTAAATGA 220275 ATTAAATGA 1 ATTAAATGA 220284 A 1 A 220285 GCATTATATC Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.53, C:0.00, G:0.16, T:0.32 Consensus pattern (9 bp): ATTAAATGA Left flanking sequence: Indices 219766 -- 220265 AAGAGTTTCGATAAATTTCATGTAAATAATAATGTAATAATTAATGCATCAACAAAGAAAGCCAA GGAGGAACTGATTAGTAATAACGACATAAATGTGGAAAAAGAAATTCATAAAAATAATAATAATG ATAACAATAATGACAATTTTAATATTCCTCCATTTTATTCAGTTGATGGTTTTAAGGGAGAAAAT TCCAATTTTTATGAACAAAAATTATCATATTTTGATTTAAATGATTTAATATTAAATAATATGAG TAGAAACAGTTTAGGTATAATATTAAGCATTTCAAAACAAGTTAAGTTTAAAGATATGCTAATAT TATTAATAAGTATATTACTTCAGTGCTTTACAGATAATTATGTTATAGCTAATAGAATGGAATCT AATTTAAAATCATATTTTGCATCTCATGGTATACCTGTTAAATGCTTTATGAAAAAGGATGATTT GGAGGTTATTGAAAACCCTAAATTCGCCAATGCTTTAGGGGTATC Right flanking sequence: Indices 220285 -- 220784 GCATTATATCCATTCATATTTAAAAACCCACAAATTTATGAAGATATATTAAGTTGTTTGTGTTT TTTCCCAAATTTAAAATATATTAAGAAAAGTGAAACAAATGATTTAGAGAAATTTGGTATTAATA CGAATGTCGATGATACATACAAATTTTTAGAAGAAAAAAAAAAAAAACTTGATCCTATTGGCCAA GTAAATACAGATAAAAAGAAAAGTTCAAATTTCGTTATGAGTACAAATGATAATGTGAATTTTGA TATGAACATAGAATATAATAATATAATTAATCCTAGTAATAATATGAATTTGCAAGATTTTACTA AAATAGATTCATTAAAGAATGAAGGAGAAAAAATAAAAGAAACAAATAAAAATGAAGAAAATATG AATGATATATATAATAATAACATATCAAATAATATATCCAATAATAATTATTACTTAAATATTTT ACCAATACCTGAACATATCAAATCTATTTATATGTTATCTGAAGT Found at i:220569 original size:8 final size:8 Alignment explanation
Indices: 220556--220571 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 220546 ATGAACATAG 220556 AATATAAT 1 AATATAAT 220564 AATATAAT 1 AATATAAT 220572 TAATCCTAGT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38 Consensus pattern (8 bp): AATATAAT Left flanking sequence: Indices 220056 -- 220555 TTCAAAACAAGTTAAGTTTAAAGATATGCTAATATTATTAATAAGTATATTACTTCAGTGCTTTA CAGATAATTATGTTATAGCTAATAGAATGGAATCTAATTTAAAATCATATTTTGCATCTCATGGT ATACCTGTTAAATGCTTTATGAAAAAGGATGATTTGGAGGTTATTGAAAACCCTAAATTCGCCAA TGCTTTAGGGGTATCATTAAGTGAATTAAATGAAGCATTATATCCATTCATATTTAAAAACCCAC AAATTTATGAAGATATATTAAGTTGTTTGTGTTTTTTCCCAAATTTAAAATATATTAAGAAAAGT GAAACAAATGATTTAGAGAAATTTGGTATTAATACGAATGTCGATGATACATACAAATTTTTAGA AGAAAAAAAAAAAAAACTTGATCCTATTGGCCAAGTAAATACAGATAAAAAGAAAAGTTCAAATT TCGTTATGAGTACAAATGATAATGTGAATTTTGATATGAACATAG Right flanking sequence: Indices 220572 -- 221071 TAATCCTAGTAATAATATGAATTTGCAAGATTTTACTAAAATAGATTCATTAAAGAATGAAGGAG AAAAAATAAAAGAAACAAATAAAAATGAAGAAAATATGAATGATATATATAATAATAACATATCA AATAATATATCCAATAATAATTATTACTTAAATATTTTACCAATACCTGAACATATCAAATCTAT TTATATGTTATCTGAAGTAGCTTTTAGTCCAAGGTGTTTAAGAAAATATCATGTCAAAAATAATT TTTATAATTTTTATATCCTAGCTACATTATTAGATTTTTTGAATTTGTTTACTATTATACAAAGT AAAACTCGACTAGCTAAATTAAGTGGAAAAGAAGAAAAAGAGAAATTTAATAAAGCATTAATGGA AATATATGGTACTGATGCAGATTTTGATAATGAATTAGAATATAAAGTTATGTATCCTTTTGCTT TAACAGCCGATAATATGTTATTTATAATAAACTTACTTTTAAAAA Found at i:220840 original size:9 final size:9 Alignment explanation
Indices: 220826--220846 Score: 42 Period size: 9 Copynumber: 2.3 Consensus size: 9 220816 CATGTCAAAA 220826 ATAATTTTT 1 ATAATTTTT 220835 ATAATTTTT 1 ATAATTTTT 220844 ATA 1 ATA 220847 TCCTAGCTAC Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 12 1.00 ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62 Consensus pattern (9 bp): ATAATTTTT Left flanking sequence: Indices 220326 -- 220825 AGATATATTAAGTTGTTTGTGTTTTTTCCCAAATTTAAAATATATTAAGAAAAGTGAAACAAATG ATTTAGAGAAATTTGGTATTAATACGAATGTCGATGATACATACAAATTTTTAGAAGAAAAAAAA AAAAAACTTGATCCTATTGGCCAAGTAAATACAGATAAAAAGAAAAGTTCAAATTTCGTTATGAG TACAAATGATAATGTGAATTTTGATATGAACATAGAATATAATAATATAATTAATCCTAGTAATA ATATGAATTTGCAAGATTTTACTAAAATAGATTCATTAAAGAATGAAGGAGAAAAAATAAAAGAA ACAAATAAAAATGAAGAAAATATGAATGATATATATAATAATAACATATCAAATAATATATCCAA TAATAATTATTACTTAAATATTTTACCAATACCTGAACATATCAAATCTATTTATATGTTATCTG AAGTAGCTTTTAGTCCAAGGTGTTTAAGAAAATATCATGTCAAAA Right flanking sequence: Indices 220847 -- 221346 TCCTAGCTACATTATTAGATTTTTTGAATTTGTTTACTATTATACAAAGTAAAACTCGACTAGCT AAATTAAGTGGAAAAGAAGAAAAAGAGAAATTTAATAAAGCATTAATGGAAATATATGGTACTGA TGCAGATTTTGATAATGAATTAGAATATAAAGTTATGTATCCTTTTGCTTTAACAGCCGATAATA TGTTATTTATAATAAACTTACTTTTAAAAACTTATAAACATTTAATAGTATATTTAATTAAAATA CCTGCTTCTTTTAATCAAAAAATTATCAAATCATTTTTCCAAAAGGAATATGGTATGTATCATTT TAGAGGAAGTATGTTATATGTAGATAATTCATCTTTTCCATATAATGATATAGCAATTAATAAAG AAAGTAGATTAAGTAATTTTTCATCAATTTCAAATTTTAGTATAACTAGTAAGAATAAAAATAAT ACAGATATAAATGTAAATAATAATACAAATGATGATTCAGCAATA Found at i:220940 original size:8 final size:9 Alignment explanation
Indices: 220923--220941 Score: 31 Period size: 8 Copynumber: 2.2 Consensus size: 9 220913 AATTAAGTGG 220923 AAAAGAAGA 1 AAAAGAAGA 220932 AAAAG-AGA 1 AAAAGAAGA 220940 AA 1 AA 220942 TTTAATAAAG Statistics Matches: 10, Mismatches: 0, Indels: 1 0.91 0.00 0.09 Matches are distributed among these distances: 8 5 0.50 9 5 0.50 ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00 Consensus pattern (9 bp): AAAAGAAGA Left flanking sequence: Indices 220423 -- 220922 GATGATACATACAAATTTTTAGAAGAAAAAAAAAAAAAACTTGATCCTATTGGCCAAGTAAATAC AGATAAAAAGAAAAGTTCAAATTTCGTTATGAGTACAAATGATAATGTGAATTTTGATATGAACA TAGAATATAATAATATAATTAATCCTAGTAATAATATGAATTTGCAAGATTTTACTAAAATAGAT TCATTAAAGAATGAAGGAGAAAAAATAAAAGAAACAAATAAAAATGAAGAAAATATGAATGATAT ATATAATAATAACATATCAAATAATATATCCAATAATAATTATTACTTAAATATTTTACCAATAC CTGAACATATCAAATCTATTTATATGTTATCTGAAGTAGCTTTTAGTCCAAGGTGTTTAAGAAAA TATCATGTCAAAAATAATTTTTATAATTTTTATATCCTAGCTACATTATTAGATTTTTTGAATTT GTTTACTATTATACAAAGTAAAACTCGACTAGCTAAATTAAGTGG Right flanking sequence: Indices 220942 -- 221441 TTTAATAAAGCATTAATGGAAATATATGGTACTGATGCAGATTTTGATAATGAATTAGAATATAA AGTTATGTATCCTTTTGCTTTAACAGCCGATAATATGTTATTTATAATAAACTTACTTTTAAAAA CTTATAAACATTTAATAGTATATTTAATTAAAATACCTGCTTCTTTTAATCAAAAAATTATCAAA TCATTTTTCCAAAAGGAATATGGTATGTATCATTTTAGAGGAAGTATGTTATATGTAGATAATTC ATCTTTTCCATATAATGATATAGCAATTAATAAAGAAAGTAGATTAAGTAATTTTTCATCAATTT CAAATTTTAGTATAACTAGTAAGAATAAAAATAATACAGATATAAATGTAAATAATAATACAAAT GATGATTCAGCAATATATTTATTAACAAAAAATAATGATGAAAATAATAAAAATGAATATCCAAT TATGGATTTATCTAATGTTTTATATAAATTAATACGTTGTGATTC Found at i:222728 original size:9 final size:9 Alignment explanation
Indices: 222714--222732 Score: 31 Period size: 9 Copynumber: 2.1 Consensus size: 9 222704 TATTTATGAT 222714 TAAACTAAA 1 TAAACTAAA * 222723 TAAACTCAA 1 TAAACTAAA 222732 T 1 T 222733 GAAAAGAAAA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.58, C:0.16, G:0.00, T:0.26 Consensus pattern (9 bp): TAAACTAAA Left flanking sequence: Indices 222214 -- 222713 AATCGTGATAATAATAATGACAATGATAATAATAATAATAATAATAATAATAATAATAATAATAA TAATGACGATGATAATAATAATCACAACAATAATAATAACCACAACAATAATAACAATAATAACC ACAATAATAACAATAATAATCACAATAACAACAATAATAATAACAATAATAATAATCACAATAAT AATAATCACAATAATAACAATAACAACAACAATAATAATAATCACAATAACAACAACAATAATAA TAATAACAATAATGAAGATGGCAATGGAGAAAATGATGATAACAACAAAACATTTTATTATAACA GAGAACAACTTATAATGTTTCGACACTCTTTATGTAATTTATTAAATAAATTAGATTATTCTAAA GAAGATTTTTCAAATGTAGCCACGTCCATAATTAGATGTCTATCCGTTTTAACATCTGCGCCAGT CATGGGATATCCTATAAAAACGAAGAATAATAAATTATTTATGAT Right flanking sequence: Indices 222733 -- 223232 GAAAAGAAAAATACAAAAATAAAAAAAATAAAAAGAAACAAAAGAAGAAAAAATGTTTCGTATGT TACCTTTCTAAACCCATCATATGTCCGCTTTAGATCGGATTCAAGCAATAACGATTCTGAATGTT CAGATATTCCATATTCAGATGATTCGGATATCTCGTATGAAGAACACTTCATTTTTGATAATGGC GAAAGTGATGAAGAGGATGATGATATTCGTTATGAATACGAAGAAGAAATGGATGATGATTATAT GGAAGAGGAAGAAATAGTAAATCAGGAAGACGGTGAAGAAGAAGACGAAGAAGAAGCTATTGAAG GAGAAGACGACGAAGAAGCACAGGATGAAGAAAATGACGAAGAGGAAGGAAATAATGAAAACGAA ACCTTATTTAATGATGAGTATTATAATCAAACAGATAACAATAACGATAACGATAACGATAACAA TAACGATAACAATAATGATAACAATAATAATTTATTAAATGATGA Found at i:223581 original size:9 final size:9 Alignment explanation
Indices: 223559--223581 Score: 32 Period size: 9 Copynumber: 2.6 Consensus size: 9 223549 GAAGTTTTAG * 223559 ATGATGAAT 1 ATGATGAAA 223568 ATGATGAAA 1 ATGATGAAA * 223577 TTGAT 1 ATGAT 223582 ATTGAAGATG Statistics Matches: 12, Mismatches: 2, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 9 12 1.00 ACGTcount: A:0.43, C:0.00, G:0.22, T:0.35 Consensus pattern (9 bp): ATGATGAAA Left flanking sequence: Indices 223059 -- 223558 AGAAGACGACGAAGAAGCACAGGATGAAGAAAATGACGAAGAGGAAGGAAATAATGAAAACGAAA CCTTATTTAATGATGAGTATTATAATCAAACAGATAACAATAACGATAACGATAACGATAACAAT AACGATAACAATAATGATAACAATAATAATTTATTAAATGATGAAGAAAATAACGATATGTCTAA TAATGATGAGGAAAATGATGTGGAAAGAGATGACGAAGATGTAGAAGGAGATGATGACGAAGATG TTGAAGTAGATGATGACGAAGAAGTTGATGTAGATGAAGATGAGGAAGAAGTTGACGTAGATGAA GATGAAGAAGAAGTAGAAGAAATGGATGATGATATGGAAAATGAAGATGATGATGAAGATGATAT AGATGATGATGATGATGAAGATGATGAAGAAGATGTAGAAGATGATGATGAAGTAGACGATGAAG TAGACGATGAAGTAGACGATGAAGTAGATGATGAAGAAGTTTTAG Right flanking sequence: Indices 223582 -- 224081 ATTGAAGATGAAGATGCTGCCGAAAGAAATAGTAACGAAGTAAATGATAATAATAGAAATGTACA TGTACATGCATATTTGGTGCAAGATAGAAATGAAATTGATGAAGACCAGATATATGATAATTCTA ACGATTTATTACTTCCTCACGAAGTAGATGAAAATGAGGAAATTTTATCAAACATGGATGATAAT AATAATAACATTGTATCCAGATTGGATTTGGTTTCGGATAGTAGTAATGATATGGATGAACAAAA TGTTCATAGAATTAGAGAAATAGATGAAACAGAAGAAGATGAAGAAGATGATGATGGAGAGGATG ATGAAGAAGATGACGATGAAGATGACGAAGAGGATGACGATGAAGATGATGATGATGAAGACGAT GGAGAGGATGATGATGAAGAAGATGATGAAGAAGATGAAGATGAAGGAGAAGAAGAATATGAAGA TGTAGAAGAAGAAGATGGAGATGAAGAAGAACTTCATATAAATAA Found at i:223865 original size:8 final size:8 Alignment explanation
Indices: 223849--223874 Score: 29 Period size: 8 Copynumber: 3.1 Consensus size: 8 223839 AAATGTTCAT * 223849 AGAATTAG 1 AGAAATAG 223857 AGAAATAG 1 AGAAATAG * 223865 ATGAAACAG 1 A-GAAATAG 223874 A 1 A 223875 AGAAGATGAA Statistics Matches: 15, Mismatches: 2, Indels: 1 0.83 0.11 0.06 Matches are distributed among these distances: 8 8 0.53 9 7 0.47 ACGTcount: A:0.58, C:0.04, G:0.23, T:0.15 Consensus pattern (8 bp): AGAAATAG Left flanking sequence: Indices 223349 -- 223848 TAGATGAAGATGAGGAAGAAGTTGACGTAGATGAAGATGAAGAAGAAGTAGAAGAAATGGATGAT GATATGGAAAATGAAGATGATGATGAAGATGATATAGATGATGATGATGATGAAGATGATGAAGA AGATGTAGAAGATGATGATGAAGTAGACGATGAAGTAGACGATGAAGTAGACGATGAAGTAGATG ATGAAGAAGTTTTAGATGATGAATATGATGAAATTGATATTGAAGATGAAGATGCTGCCGAAAGA AATAGTAACGAAGTAAATGATAATAATAGAAATGTACATGTACATGCATATTTGGTGCAAGATAG AAATGAAATTGATGAAGACCAGATATATGATAATTCTAACGATTTATTACTTCCTCACGAAGTAG ATGAAAATGAGGAAATTTTATCAAACATGGATGATAATAATAATAACATTGTATCCAGATTGGAT TTGGTTTCGGATAGTAGTAATGATATGGATGAACAAAATGTTCAT Right flanking sequence: Indices 223875 -- 224374 AGAAGATGAAGAAGATGATGATGGAGAGGATGATGAAGAAGATGACGATGAAGATGACGAAGAGG ATGACGATGAAGATGATGATGATGAAGACGATGGAGAGGATGATGATGAAGAAGATGATGAAGAA GATGAAGATGAAGGAGAAGAAGAATATGAAGATGTAGAAGAAGAAGATGGAGATGAAGAAGAACT TCATATAAATAACAGTACATATAATGTTAATCAAAATGTAGATAATATTAGATCGAATAATAATA ATACAGATTTAATAGATAACGAAATAAATGTAAATAATTCTCTATTAAATTGTAATGAAAATCAA CATGAAATATTAGATATCTTATTAGAAGAAGATGGAGCTTATAATATTAATGATGATATAGATGA ATATAATGATGATTATGTAGACGAAGTGGACAATAATAATAATAATAATAATAATAATAATAATA ACAACAATAACAATAATAATAATAATAGAAGTAATAATAACAGTT Found at i:225091 original size:9 final size:9 Alignment explanation
Indices: 225049--225078 Score: 46 Period size: 9 Copynumber: 3.3 Consensus size: 9 225039 AATTGATTCA 225049 AATATTAAT 1 AATATTAAT * 225058 AATATAAAT 1 AATATTAAT * 225067 AATATTAAA 1 AATATTAAT 225076 AAT 1 AAT 225079 GATATTAATG Statistics Matches: 18, Mismatches: 3, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 9 18 1.00 ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37 Consensus pattern (9 bp): AATATTAAT Left flanking sequence: Indices 224549 -- 225048 ATAATACATTTGCAGGTCAAAAATCTTCCTCAAATGAAAGAGATGTTTTAGAAAATAATGTAAAT AATAGTATCATTATTCATAATGAAAATAGTACACATGATCATCATATAAATTCTTCATTATTAGA TAATAATAAAAATCAAAATATTTCAAATAATATAAGTATGATACATAATAGTACAATAGAAACGA AAAATAATATTCTTCCTAATGCTTTAGAAAATAACATTCACAATAATATAGATACACAAAATAAT TTATGTAATAATGTAAATGCAAATAGTTGTTCTAATAATATATATGCGAATACTCAAACTAAAAG TGAGAAAAAAGGTACCATAAAAAATGGCATCAGTTTAGAAAATAACGAAGAAAATACTAATGAAC ATATTAATAAAAATAATGTAATAGTAGGAGAAAATTATATTCTCAATAATAAAATAAAGAATGAA CAAATTAATAATACTAAAGTTAAGAATGATCATATAATTGATTCA Right flanking sequence: Indices 225079 -- 225578 GATATTAATGATAATATTATAAAAGTTGATAAAAACAATATTAAAAATAACGATTCATTTGCTGT CAAAGATAAAAGTATGTTAGAATCATCAGAAAGTACAACAAATATTAGAAATGTAGATGAAAATA ATGTAAGCATAATTGATTTGTATTATCATTTTTATGGTTCTAATAATAGGGACATAAATACATTA TTAAATGAAAATAATAGTATCTTATATTTAAATGAAACGGGTCAAATAAATTCGACACAAATAAA AGAAACAAACAATAAAATTAATAATAATAATAATAATAATAATAATAACAATAATAACAATAATA ACAATAATAACAATGGTAATAACACAAGTGTTGATAATAAAGATTCTAAAAAAACAGATAAATCA AATAATACAAATGACGCTGAACAAGTAGCATTACAATTAAATAATAACAATACTGAAGGCGTAGA AGAATTTAATAATATAACCAGTCTTAATATAGAAAATTTAATGGA Found at i:225594 original size:10 final size:10 Alignment explanation
Indices: 225579--225599 Score: 35 Period size: 10 Copynumber: 2.1 Consensus size: 10 225569 ATTTAATGGA 225579 TCAACTGTAT 1 TCAACTGTAT * 225589 TCAACTTTAT 1 TCAACTGTAT 225599 T 1 T 225600 AAGTACAGAT Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.29, C:0.19, G:0.05, T:0.48 Consensus pattern (10 bp): TCAACTGTAT Left flanking sequence: Indices 225079 -- 225578 GATATTAATGATAATATTATAAAAGTTGATAAAAACAATATTAAAAATAACGATTCATTTGCTGT CAAAGATAAAAGTATGTTAGAATCATCAGAAAGTACAACAAATATTAGAAATGTAGATGAAAATA ATGTAAGCATAATTGATTTGTATTATCATTTTTATGGTTCTAATAATAGGGACATAAATACATTA TTAAATGAAAATAATAGTATCTTATATTTAAATGAAACGGGTCAAATAAATTCGACACAAATAAA AGAAACAAACAATAAAATTAATAATAATAATAATAATAATAATAATAACAATAATAACAATAATA ACAATAATAACAATGGTAATAACACAAGTGTTGATAATAAAGATTCTAAAAAAACAGATAAATCA AATAATACAAATGACGCTGAACAAGTAGCATTACAATTAAATAATAACAATACTGAAGGCGTAGA AGAATTTAATAATATAACCAGTCTTAATATAGAAAATTTAATGGA Right flanking sequence: Indices 225600 -- 226099 AAGTACAGATATAAGAACAAATGATCTTTTAAACAATGAAATTATATCATTGCAAAATATAGCTA ACCGTGTACAAAGAAATAATGATTTTAATAATATTGTAGATGAGAGCAGTTATAATATTATAGGA GATGATATAACAGAAAATCGTAATTTATATGATAATCGTTTGAATAGAAATAATAGTGTTCCATA TATTCATAGAAATGTAGAAAGATTAAATAATTTCCCTCCATTACCAACATCAAACAATAATACAA ATATTAGAGCAAGCTGGAACAATAGAAATATAAATCGTCCAAATAGCATAACAAATAATGTTGTG AATAATTCCCTGAACAATATAACAAGTAGTATTAGAAATAATAATTTGAGAAATATATTTAACAA TATTAGAAATAATAATAATAATGAAAATGTTTTTAATAGGCATAGAACTATTAATATTGTTCCAT CTATTATAAGAAATGATATAATTCAAAATTTATCAGCATCACACC Found at i:227007 original size:9 final size:9 Alignment explanation
Indices: 226985--227073 Score: 94 Period size: 9 Copynumber: 9.9 Consensus size: 9 226975 AGTGACAGTG * 226985 ATGATTATA 1 ATGATAATA * 226994 ATGATAACA 1 ATGATAATA * 227003 GTGATAATA 1 ATGATAATA * 227012 ATAATAATA 1 ATGATAATA 227021 ATGATAATA 1 ATGATAATA * * 227030 ATAATGATA 1 ATGATAATA * * 227039 ATAATGATA 1 ATGATAATA * * 227048 ATAATAATG 1 ATGATAATA * 227057 ATAATAATA 1 ATGATAATA * 227066 ATGAGAAT 1 ATGATAAT 227074 CAAAATAATG Statistics Matches: 66, Mismatches: 14, Indels: 0 0.82 0.17 0.00 Matches are distributed among these distances: 9 66 1.00 ACGTcount: A:0.55, C:0.01, G:0.11, T:0.33 Consensus pattern (9 bp): ATGATAATA Left flanking sequence: Indices 226485 -- 226984 TAAAGCTATACCAAAAGTTCATATTAAATTACCTTTAGAAAATTTAATTGAAGAGAAAAAAAGAA TTATTCAAACATTGAAAAAACAAAAAGAACAAGAACAATTACAAGAAAATATAAAAGGAAATGAT AATAATAATAATAATAATAATTCCAATAAAGAACATCAAAATGAACTAGAGGATGTAAACAAAAA CAAAGGTGATCAAAATAAAAAAGATAAAAAGGGAAACAAGGACAAAAAATTATCTCGTTTTACTA CAACTACAAATGATAAAAAAAAAAATACCAATGAAGAAAATGACATAATAGAGTCGAATGAAAAT GATAATATAACAAATGCACAATTAGGTTCACATAACGAACAACTAGAAAATACTGAATTGAATAA TGATAATAATAATAATAATAATAATACAAACAATGGATTTAACCCTAATGAAGGTGATAATGACA GTGATAGTGACAGTAATAGTGACAGTAATAGTGATAGTGACAGTG Right flanking sequence: Indices 227074 -- 227573 CAAAATAATGTAAATAATGATGAAGATCATTTAGAAGAAGAAAATGAAGAAGATTATAAAAATAT TAATTATGAAGAATTATTTGATAATATTTTAAATATTGAATCACTTCTTATAATTTGCTGTTCCT TAGGAATAAGTGAATCTCAATTTTTGGAGCTCTTAAATGTTGATAGATCATTTCTTATAGAATTA CCATCAAATTTAATAGATGAACTTATAATTCAACATTTAAAAAATATCACCTTAACAGGAATTAG TGAAAAGGCACAAGATAATATAAAAAACAAAAAAATAATATCAATTAAAATGTATAAGAATTATC TGAAATATCAAGAATATAAAAAATCCCAAGAAAATAATGCATCCAATGAAAATAATACAAATGAT ATATTAAATAACACAACGGGTAATAATATAACAAATGATAACAATAATAATGATAATAATAATAA TAATAATGATAATAATATTAATAATAATGTGTCAAGTGCTAATTC Found at i:227166 original size:10 final size:9 Alignment explanation
Indices: 227149--227175 Score: 31 Period size: 9 Copynumber: 2.9 Consensus size: 9 227139 TAATTATGAA * 227149 GAATTATTT 1 GAAATATTT 227158 GATAATATTT 1 GA-AATATTT * 227168 TAAATATT 1 GAAATATT 227176 GAATCACTTC Statistics Matches: 15, Mismatches: 2, Indels: 2 0.79 0.11 0.11 Matches are distributed among these distances: 9 8 0.53 10 7 0.47 ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52 Consensus pattern (9 bp): GAAATATTT Left flanking sequence: Indices 226649 -- 227148 ATCAAAATGAACTAGAGGATGTAAACAAAAACAAAGGTGATCAAAATAAAAAAGATAAAAAGGGA AACAAGGACAAAAAATTATCTCGTTTTACTACAACTACAAATGATAAAAAAAAAAATACCAATGA AGAAAATGACATAATAGAGTCGAATGAAAATGATAATATAACAAATGCACAATTAGGTTCACATA ACGAACAACTAGAAAATACTGAATTGAATAATGATAATAATAATAATAATAATAATACAAACAAT GGATTTAACCCTAATGAAGGTGATAATGACAGTGATAGTGACAGTAATAGTGACAGTAATAGTGA TAGTGACAGTGATGATTATAATGATAACAGTGATAATAATAATAATAATGATAATAATAATGATA ATAATGATAATAATAATGATAATAATAATGAGAATCAAAATAATGTAAATAATGATGAAGATCAT TTAGAAGAAGAAAATGAAGAAGATTATAAAAATATTAATTATGAA Right flanking sequence: Indices 227176 -- 227675 GAATCACTTCTTATAATTTGCTGTTCCTTAGGAATAAGTGAATCTCAATTTTTGGAGCTCTTAAA TGTTGATAGATCATTTCTTATAGAATTACCATCAAATTTAATAGATGAACTTATAATTCAACATT TAAAAAATATCACCTTAACAGGAATTAGTGAAAAGGCACAAGATAATATAAAAAACAAAAAAATA ATATCAATTAAAATGTATAAGAATTATCTGAAATATCAAGAATATAAAAAATCCCAAGAAAATAA TGCATCCAATGAAAATAATACAAATGATATATTAAATAACACAACGGGTAATAATATAACAAATG ATAACAATAATAATGATAATAATAATAATAATAATGATAATAATATTAATAATAATGTGTCAAGT GCTAATTCAACGACGAATAATTGTGCTACAGAATTTAATGAACGACCTAATAATGAAAATTCAAG TGTAATACAAAATCTTGATAATAATACAAATATTCAAAATAATAT Found at i:227414 original size:9 final size:9 Alignment explanation
Indices: 227402--227430 Score: 30 Period size: 9 Copynumber: 3.2 Consensus size: 9 227392 AATTATCTGA 227402 AATATCAAG 1 AATATCAAG * * 227411 AATATAAAA 1 AATATCAAG ** 227420 AATCCCAAG 1 AATATCAAG 227429 AA 1 AA 227431 AATAATGCAT Statistics Matches: 14, Mismatches: 6, Indels: 0 0.70 0.30 0.00 Matches are distributed among these distances: 9 14 1.00 ACGTcount: A:0.62, C:0.14, G:0.07, T:0.17 Consensus pattern (9 bp): AATATCAAG Left flanking sequence: Indices 226902 -- 227401 AAACAATGGATTTAACCCTAATGAAGGTGATAATGACAGTGATAGTGACAGTAATAGTGACAGTA ATAGTGATAGTGACAGTGATGATTATAATGATAACAGTGATAATAATAATAATAATGATAATAAT AATGATAATAATGATAATAATAATGATAATAATAATGAGAATCAAAATAATGTAAATAATGATGA AGATCATTTAGAAGAAGAAAATGAAGAAGATTATAAAAATATTAATTATGAAGAATTATTTGATA ATATTTTAAATATTGAATCACTTCTTATAATTTGCTGTTCCTTAGGAATAAGTGAATCTCAATTT TTGGAGCTCTTAAATGTTGATAGATCATTTCTTATAGAATTACCATCAAATTTAATAGATGAACT TATAATTCAACATTTAAAAAATATCACCTTAACAGGAATTAGTGAAAAGGCACAAGATAATATAA AAAACAAAAAAATAATATCAATTAAAATGTATAAGAATTATCTGA Right flanking sequence: Indices 227431 -- 227930 AATAATGCATCCAATGAAAATAATACAAATGATATATTAAATAACACAACGGGTAATAATATAAC AAATGATAACAATAATAATGATAATAATAATAATAATAATGATAATAATATTAATAATAATGTGT CAAGTGCTAATTCAACGACGAATAATTGTGCTACAGAATTTAATGAACGACCTAATAATGAAAAT TCAAGTGTAATACAAAATCTTGATAATAATACAAATATTCAAAATAATATAAATGATGAAAAGGA ACAAAATATTCGTATATTTAATAGTATAAAAAAAAGCTATTTAGAAGCTTTACCATCAAGTATTA GATCCGAAATTAAAAAAAGAATTATAGGAAATAGAACTGAAAGAACTGATGTACAAGATGAAACT AATATTTCTTTTATAGATTCTTTAACGCCTGAATTAAGAAGAGATGTATTATCGACAGCTAGTAT ACGATTTATAAGAACATTAACTGACGACATGATAGAAGAAGCGAG Found at i:228145 original size:9 final size:9 Alignment explanation
Indices: 228133--228216 Score: 98 Period size: 9 Copynumber: 9.3 Consensus size: 9 228123 CAATACAAAT 228133 AATGTAAGC 1 AATGTAAGC 228142 AATGTAAGC 1 AATGTAAGC * 228151 AATGTAGGC 1 AATGTAAGC ** ** 228160 AATACAAAT 1 AATGTAAGC * 228169 AATGTAAAC 1 AATGTAAGC * ** 228178 AGTGTAAAT 1 AATGTAAGC * 228187 AATGTAAAC 1 AATGTAAGC 228196 AATGTAAGC 1 AATGTAAGC 228205 AATGTAAGC 1 AATGTAAGC 228214 AAT 1 AAT 228217 ACAAATAACA Statistics Matches: 61, Mismatches: 14, Indels: 0 0.81 0.19 0.00 Matches are distributed among these distances: 9 61 1.00 ACGTcount: A:0.49, C:0.10, G:0.18, T:0.24 Consensus pattern (9 bp): AATGTAAGC Left flanking sequence: Indices 227633 -- 228132 TAATACAAAATCTTGATAATAATACAAATATTCAAAATAATATAAATGATGAAAAGGAACAAAAT ATTCGTATATTTAATAGTATAAAAAAAAGCTATTTAGAAGCTTTACCATCAAGTATTAGATCCGA AATTAAAAAAAGAATTATAGGAAATAGAACTGAAAGAACTGATGTACAAGATGAAACTAATATTT CTTTTATAGATTCTTTAACGCCTGAATTAAGAAGAGATGTATTATCGACAGCTAGTATACGATTT ATAAGAACATTAACTGACGACATGATAGAAGAAGCGAGAAACCTAAGATTGGTAATATTAAATAA TCGTAATAGTGCTCTAAATGCAAATAATAGAAATAGACAAAATGTTTCAAATAATGATGGAGCAA ATACTACAGCTACAAATAACAGAAGTGTAAGTGATCGAAATGCACAAAATATGAATAATATAAGC AATACAAATAATACAAGCACTGTAAATGATACGAACAATACAAAT Right flanking sequence: Indices 228217 -- 228716 ACAAATAACATGAACAATAATAATAATAACAATAATAATAATAGTATTAGTAGTAGCAGTAATAA TAACAGCAGTAGTAGCAGCAGCAATATAACATCAACTACCAACCGAAATATAAACGGTTCCAATG TAGCAAATTTAATTAACAATATAAGAAATAATATTCAAGTTAGAATTAGTAATCGTGCTTTGAGA AATGTATCAAACAATTTAAATAATAGTAATCATAACCATAATAATATAAATATTATAAATAATAT AAACAACATTAATAGTATCAATAATATGAATATTATTAACAATAATAATATGATTGTGAACAATT TTAATAGAAGTAATAGAAATAGTAATAGACTGGTTTTTACCGGAGGGAACCGAAATAATCTTAAT AACAGACGTCGTTTGAATTTACCTTTAAGAAATTCACTTTCAAATATGCAAAGAAACAATTTTAT TAGAATTACCTATAATGAAAATAATGCTCCAGTTATTATGATAAA Found at i:228463 original size:9 final size:9 Alignment explanation
Indices: 228451--228520 Score: 70 Period size: 9 Copynumber: 7.8 Consensus size: 9 228441 TCATAACCAT 228451 AATAATATA 1 AATAATATA * 228460 AATATTATA 1 AATAATATA 228469 AATAATATA 1 AATAATATA * * * 228478 AACAACATT 1 AATAATATA * * 228487 AATAGTATC 1 AATAATATA * 228496 AATAATATG 1 AATAATATA * * 228505 AATATTATT 1 AATAATATA * 228514 AACAATA 1 AATAATA 228521 ATAATATGAT Statistics Matches: 46, Mismatches: 15, Indels: 0 0.75 0.25 0.00 Matches are distributed among these distances: 9 46 1.00 ACGTcount: A:0.57, C:0.06, G:0.03, T:0.34 Consensus pattern (9 bp): AATAATATA Left flanking sequence: Indices 227951 -- 228450 TAAATAATCGTAATAGTGCTCTAAATGCAAATAATAGAAATAGACAAAATGTTTCAAATAATGAT GGAGCAAATACTACAGCTACAAATAACAGAAGTGTAAGTGATCGAAATGCACAAAATATGAATAA TATAAGCAATACAAATAATACAAGCACTGTAAATGATACGAACAATACAAATAATGTAAGCAATG TAAGCAATGTAGGCAATACAAATAATGTAAACAGTGTAAATAATGTAAACAATGTAAGCAATGTA AGCAATACAAATAACATGAACAATAATAATAATAACAATAATAATAATAGTATTAGTAGTAGCAG TAATAATAACAGCAGTAGTAGCAGCAGCAATATAACATCAACTACCAACCGAAATATAAACGGTT CCAATGTAGCAAATTTAATTAACAATATAAGAAATAATATTCAAGTTAGAATTAGTAATCGTGCT TTGAGAAATGTATCAAACAATTTAAATAATAGTAATCATAACCAT Right flanking sequence: Indices 228521 -- 229020 ATAATATGATTGTGAACAATTTTAATAGAAGTAATAGAAATAGTAATAGACTGGTTTTTACCGGA GGGAACCGAAATAATCTTAATAACAGACGTCGTTTGAATTTACCTTTAAGAAATTCACTTTCAAA TATGCAAAGAAACAATTTTATTAGAATTACCTATAATGAAAATAATGCTCCAGTTATTATGATAA ACACAGGTCATGAAAATTATGACAGTTTAACGGTTACTCGTTTTATTGATAATATTATGGGTATT AGAACACATGATGCACTGGCATCTGGTTTGCCTATAGGAGATAGTAATAATAGTAGTAATTATAA TAATAATAGTAATAATAATAATAATAACAATAATAACAGTAATAGTAACAATAATAATAATAATA ATAGCAACAACAATAATAATAACAACAATAATAACAACAATAATAACAACAATAATAACAACAAT AATAACAGTAATAGTAATAATGAACGATCAAGATTATTTATGAGT Found at i:229774 original size:8 final size:7 Alignment explanation
Indices: 229761--229779 Score: 29 Period size: 8 Copynumber: 2.6 Consensus size: 7 229751 GGGAAAAGAA 229761 AAATAAT 1 AAATAAT 229768 GAAATAAT 1 -AAATAAT 229776 AAAT 1 AAAT 229780 TATCAAAAAG Statistics Matches: 11, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 7 4 0.36 8 7 0.64 ACGTcount: A:0.68, C:0.00, G:0.05, T:0.26 Consensus pattern (7 bp): AAATAAT Left flanking sequence: Indices 229261 -- 229760 AAAGAAATTAATAAAAAAATAATGTTTACATTATTTTGTAATTTAACTTGTTCATATCAAAAAAC AAAGGTATATACACTACAATTATTTATGAACATTTTATGGTGTGCATCAGCTGATTTACACGCAA AAAAAAATAATCCATCAATAGTATATTTAAATTCTATAAATTTCCCTCCTAAAATGTTATATTAT AATATGAATAAGAAACATTATGGTTTATTTTCAGATAATTATTTTATTACTGCATCTATATCAGC CGAAAGAGTACTAGAACAAGTACAATCATTACTTATTACCGTACCACATATTTCTTCATTCTTTT GTACATTTTTAATACACCCATCTTATTTTATGCCAAACGATTTAGATGAAAACATGATAACTAAC AATGATAAGGGAAACGAAACTAATATTAATCAGGGTAATCATAATTTCATGGATGTTCCATATTA TGGGGATAAAATGATAAAGAATGAAAAGACTGATGGGGAAAAGAA Right flanking sequence: Indices 229780 -- 230279 TATCAAAAAGAAAAAGATGTAGAAGAAGAAAAAGAATATGATGATGAAGCTGTTATTTTAGAATA TGAATTAAAAAGAAAAAGACCAAAGATGGATGAAAAAAAAAAGCAAAAAAATCAAATATCAGATA TATATAAAAATAAAACTAACATAAATGATAAAATTAGCACACAAGTAGATATGTCTAAATATGAA TATCCGATAAATATCTTATTCAAATTATTAAATTCATCTTTATATTTAACCTCTAAAAAATTAAT GAGTCATTTATTATCTGTTATTTATAATTTATTAATTAATTGCGCCAAAAAAAATCATAATTATG CAAATTTTACAAGATGGGTATATGAAGAAAATTTAGAAGAAATAATCAGCATGGAAAATGAAAAT AATGAAGAGGAAGTAACAAGTGATGATAATAATAAAAATAATAATAATAATAGTAGCAATAATAA TAATAATAATAGTAGCAACAGTAATAATAACAAAATGTCAAATGA Found at i:229894 original size:9 final size:9 Alignment explanation
Indices: 229880--229900 Score: 35 Period size: 9 Copynumber: 2.3 Consensus size: 9 229870 ATGGATGAAA 229880 AAAAAAAGC 1 AAAAAAAGC * 229889 AAAAAAATC 1 AAAAAAAGC 229898 AAA 1 AAA 229901 TATCAGATAT Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 9 11 1.00 ACGTcount: A:0.81, C:0.10, G:0.05, T:0.05 Consensus pattern (9 bp): AAAAAAAGC Left flanking sequence: Indices 229380 -- 229879 TTTACACGCAAAAAAAAATAATCCATCAATAGTATATTTAAATTCTATAAATTTCCCTCCTAAAA TGTTATATTATAATATGAATAAGAAACATTATGGTTTATTTTCAGATAATTATTTTATTACTGCA TCTATATCAGCCGAAAGAGTACTAGAACAAGTACAATCATTACTTATTACCGTACCACATATTTC TTCATTCTTTTGTACATTTTTAATACACCCATCTTATTTTATGCCAAACGATTTAGATGAAAACA TGATAACTAACAATGATAAGGGAAACGAAACTAATATTAATCAGGGTAATCATAATTTCATGGAT GTTCCATATTATGGGGATAAAATGATAAAGAATGAAAAGACTGATGGGGAAAAGAAAAATAATGA AATAATAAATTATCAAAAAGAAAAAGATGTAGAAGAAGAAAAAGAATATGATGATGAAGCTGTTA TTTTAGAATATGAATTAAAAAGAAAAAGACCAAAGATGGATGAAA Right flanking sequence: Indices 229901 -- 230400 TATCAGATATATATAAAAATAAAACTAACATAAATGATAAAATTAGCACACAAGTAGATATGTCT AAATATGAATATCCGATAAATATCTTATTCAAATTATTAAATTCATCTTTATATTTAACCTCTAA AAAATTAATGAGTCATTTATTATCTGTTATTTATAATTTATTAATTAATTGCGCCAAAAAAAATC ATAATTATGCAAATTTTACAAGATGGGTATATGAAGAAAATTTAGAAGAAATAATCAGCATGGAA AATGAAAATAATGAAGAGGAAGTAACAAGTGATGATAATAATAAAAATAATAATAATAATAGTAG CAATAATAATAATAATAATAGTAGCAACAGTAATAATAACAAAATGTCAAATGATAGGAATGGTA CAAATCCTGAAAGAAATGTCTCTTGTACAAATAAAGAAAATACAAATAAAAATAAAGATACAAAA CAAAAACAAAATAAAGAAAAAGAAAATTTTCTTTCTTCAACTAAA Found at i:229905 original size:7 final size:7 Alignment explanation
Indices: 229891--229910 Score: 26 Period size: 7 Copynumber: 2.9 Consensus size: 7 229881 AAAAAAGCAA * 229891 AAAAATC 1 AAATATC 229898 AAATATC 1 AAATATC * 229905 AGATAT 1 AAATAT 229911 ATATAAAAAT Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 7 11 1.00 ACGTcount: A:0.60, C:0.10, G:0.05, T:0.25 Consensus pattern (7 bp): AAATATC Left flanking sequence: Indices 229391 -- 229890 AAAAAAATAATCCATCAATAGTATATTTAAATTCTATAAATTTCCCTCCTAAAATGTTATATTAT AATATGAATAAGAAACATTATGGTTTATTTTCAGATAATTATTTTATTACTGCATCTATATCAGC CGAAAGAGTACTAGAACAAGTACAATCATTACTTATTACCGTACCACATATTTCTTCATTCTTTT GTACATTTTTAATACACCCATCTTATTTTATGCCAAACGATTTAGATGAAAACATGATAACTAAC AATGATAAGGGAAACGAAACTAATATTAATCAGGGTAATCATAATTTCATGGATGTTCCATATTA TGGGGATAAAATGATAAAGAATGAAAAGACTGATGGGGAAAAGAAAAATAATGAAATAATAAATT ATCAAAAAGAAAAAGATGTAGAAGAAGAAAAAGAATATGATGATGAAGCTGTTATTTTAGAATAT GAATTAAAAAGAAAAAGACCAAAGATGGATGAAAAAAAAAAGCAA Right flanking sequence: Indices 229911 -- 230410 ATATAAAAATAAAACTAACATAAATGATAAAATTAGCACACAAGTAGATATGTCTAAATATGAAT ATCCGATAAATATCTTATTCAAATTATTAAATTCATCTTTATATTTAACCTCTAAAAAATTAATG AGTCATTTATTATCTGTTATTTATAATTTATTAATTAATTGCGCCAAAAAAAATCATAATTATGC AAATTTTACAAGATGGGTATATGAAGAAAATTTAGAAGAAATAATCAGCATGGAAAATGAAAATA ATGAAGAGGAAGTAACAAGTGATGATAATAATAAAAATAATAATAATAATAGTAGCAATAATAAT AATAATAATAGTAGCAACAGTAATAATAACAAAATGTCAAATGATAGGAATGGTACAAATCCTGA AAGAAATGTCTCTTGTACAAATAAAGAAAATACAAATAAAAATAAAGATACAAAACAAAAACAAA ATAAAGAAAAAGAAAATTTTCTTTCTTCAACTAAAATTGATAAAG Found at i:230069 original size:7 final size:8 Alignment explanation
Indices: 230059--230080 Score: 30 Period size: 8 Copynumber: 2.9 Consensus size: 8 230049 ATTATCTGTT 230059 ATTTA-TA 1 ATTTATTA 230066 ATTTATTA 1 ATTTATTA * 230074 ATTAATT 1 ATTTATT 230081 GCGCCAAAAA Statistics Matches: 13, Mismatches: 1, Indels: 1 0.87 0.07 0.07 Matches are distributed among these distances: 7 5 0.38 8 8 0.62 ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59 Consensus pattern (8 bp): ATTTATTA Left flanking sequence: Indices 229559 -- 230058 CCGTACCACATATTTCTTCATTCTTTTGTACATTTTTAATACACCCATCTTATTTTATGCCAAAC GATTTAGATGAAAACATGATAACTAACAATGATAAGGGAAACGAAACTAATATTAATCAGGGTAA TCATAATTTCATGGATGTTCCATATTATGGGGATAAAATGATAAAGAATGAAAAGACTGATGGGG AAAAGAAAAATAATGAAATAATAAATTATCAAAAAGAAAAAGATGTAGAAGAAGAAAAAGAATAT GATGATGAAGCTGTTATTTTAGAATATGAATTAAAAAGAAAAAGACCAAAGATGGATGAAAAAAA AAAGCAAAAAAATCAAATATCAGATATATATAAAAATAAAACTAACATAAATGATAAAATTAGCA CACAAGTAGATATGTCTAAATATGAATATCCGATAAATATCTTATTCAAATTATTAAATTCATCT TTATATTTAACCTCTAAAAAATTAATGAGTCATTTATTATCTGTT Right flanking sequence: Indices 230081 -- 230580 GCGCCAAAAAAAATCATAATTATGCAAATTTTACAAGATGGGTATATGAAGAAAATTTAGAAGAA ATAATCAGCATGGAAAATGAAAATAATGAAGAGGAAGTAACAAGTGATGATAATAATAAAAATAA TAATAATAATAGTAGCAATAATAATAATAATAATAGTAGCAACAGTAATAATAACAAAATGTCAA ATGATAGGAATGGTACAAATCCTGAAAGAAATGTCTCTTGTACAAATAAAGAAAATACAAATAAA AATAAAGATACAAAACAAAAACAAAATAAAGAAAAAGAAAATTTTCTTTCTTCAACTAAAATTGA TAAAGAATTATTATTAAATATAAAAAGTTTAAAACCAATAGATGAAGAAATAGATAAAAAGGATT TAATTTCTAAACCATATTATTTATTAGAAGTTATATCAAAAGATGCATTACGTAATTTAAGTAAA CTAATATGTAATTACAAAACGAACTTTTTATGGATTAATAATATG Found at i:231653 original size:7 final size:7 Alignment explanation
Indices: 231641--231656 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 231631 AATAACGATG 231641 AAAAGAA 1 AAAAGAA 231648 AAAAGAA 1 AAAAGAA 231655 AA 1 AA 231657 TGATGATGAA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00 Consensus pattern (7 bp): AAAAGAA Left flanking sequence: Indices 231141 -- 231640 AAGTTTCGTAAACAATAATGATATGGACAATGAAACAATTAAAAATGACTATGAAAAACATATAA ATAAAACAAGAGTTGATGAAGAAACCAAATTTGATATATGCGCAGATTTTTTTCTCTCAATAAAT ATTGATTTATTGTGGGAAGAATTTAATAAAACCATGCAAGTTATTAATAATTCATTGATTGATAA AAATTATAAATTTAAAGATAACTATTATTATAAAGATTTAAACACAACTAAAGATGATAATAAGA AAGAAAATAATAATGATAAGTTACAAACGGGTAATGTTCATAAAACAAATGAAAAAGAAGATAAG AATATTAGTAACAATTTAGCTGATACACAAGACAATAACATAGTTACCTTGTTTAATACAGATTC TTCATCTAACGACTGTTCAGATCATGGTGATATATATTCAAATGATAGATTATCAAGTAATATAC AAAACGAAGAAATAATAACAAATGTAGAAAATGAAAATAACGATG Right flanking sequence: Indices 231657 -- 232156 TGATGATGAACCACCTCCAACAATTTTAAACTATCTCTTACCATTAATGGAAGCCTATTTATTTA TTGAAGAAGTTATATTAGTATCACAATATAAACTAAGAAAATTTAAAGACTTAGAAAAAAAAGTA GCCAGTTTAAATGTAGAAAGCATCAAAATTAATGAAAAGTTGGCATATGATGATAGCCCATTTTA TATAAACATATATAATAAAAAGAAAATGATGAAGAAAAAAAATAAAAAATATAAAAGTACAAAAG AGTTATTGCTGGATATATTTGACGATTCTCATATCAATAGTGATCCAACTAATTTAAATAAAATT AAAAGAAAAATGTGTACAAATAAATTAGAACAACAAAAACAAAAACAAGAAGAAGAAGAAGAAGA AGAAGAAGAAGACGATAAAAAAAAAATACAAAATAATTATACTCACGATGATTCAATGAATAATA ATATAGTTGAAAATGAAAATATAAATGAATGTATAAATCAAAATA Found at i:231900 original size:7 final size:7 Alignment explanation
Indices: 231888--231907 Score: 33 Period size: 7 Copynumber: 2.9 Consensus size: 7 231878 TGATGAAGAA 231888 AAAAAAT 1 AAAAAAT 231895 AAAAAAT 1 AAAAAAT * 231902 ATAAAA 1 AAAAAA 231908 GTACAAAAGA Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 7 12 1.00 ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15 Consensus pattern (7 bp): AAAAAAT Left flanking sequence: Indices 231388 -- 231887 GATGATAATAAGAAAGAAAATAATAATGATAAGTTACAAACGGGTAATGTTCATAAAACAAATGA AAAAGAAGATAAGAATATTAGTAACAATTTAGCTGATACACAAGACAATAACATAGTTACCTTGT TTAATACAGATTCTTCATCTAACGACTGTTCAGATCATGGTGATATATATTCAAATGATAGATTA TCAAGTAATATACAAAACGAAGAAATAATAACAAATGTAGAAAATGAAAATAACGATGAAAAGAA AAAAGAAAATGATGATGAACCACCTCCAACAATTTTAAACTATCTCTTACCATTAATGGAAGCCT ATTTATTTATTGAAGAAGTTATATTAGTATCACAATATAAACTAAGAAAATTTAAAGACTTAGAA AAAAAAGTAGCCAGTTTAAATGTAGAAAGCATCAAAATTAATGAAAAGTTGGCATATGATGATAG CCCATTTTATATAAACATATATAATAAAAAGAAAATGATGAAGAA Right flanking sequence: Indices 231908 -- 232407 GTACAAAAGAGTTATTGCTGGATATATTTGACGATTCTCATATCAATAGTGATCCAACTAATTTA AATAAAATTAAAAGAAAAATGTGTACAAATAAATTAGAACAACAAAAACAAAAACAAGAAGAAGA AGAAGAAGAAGAAGAAGAAGACGATAAAAAAAAAATACAAAATAATTATACTCACGATGATTCAA TGAATAATAATATAGTTGAAAATGAAAATATAAATGAATGTATAAATCAAAATACAAATGAAAAA GATCATGTTGAAGGACAAGACCAATTGGTAAGAAATAAATTGAAAAAGAAAAAATTAAATGAAGA CCAAACGAATGATAATAATAATAATAATAATAATAATAATATACAGCAGTTAAACAAAAGAGAAG AAATGATAGTATGTGGTAATCATGATCGACAGGAAAAACCAAACGATAAAGAAAATAAAAATAAG AATAAAAATAAAAATGATAGAAATAACGAACAACTTGATTCCAAT Found at i:231900 original size:9 final size:9 Alignment explanation
Indices: 231886--231907 Score: 37 Period size: 9 Copynumber: 2.4 Consensus size: 9 231876 AATGATGAAG 231886 AAAAAAAAT 1 AAAAAAAAT * 231895 AAAAAATAT 1 AAAAAAAAT 231904 AAAA 1 AAAA 231908 GTACAAAAGA Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 9 12 1.00 ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14 Consensus pattern (9 bp): AAAAAAAAT Left flanking sequence: Indices 231386 -- 231885 AAGATGATAATAAGAAAGAAAATAATAATGATAAGTTACAAACGGGTAATGTTCATAAAACAAAT GAAAAAGAAGATAAGAATATTAGTAACAATTTAGCTGATACACAAGACAATAACATAGTTACCTT GTTTAATACAGATTCTTCATCTAACGACTGTTCAGATCATGGTGATATATATTCAAATGATAGAT TATCAAGTAATATACAAAACGAAGAAATAATAACAAATGTAGAAAATGAAAATAACGATGAAAAG AAAAAAGAAAATGATGATGAACCACCTCCAACAATTTTAAACTATCTCTTACCATTAATGGAAGC CTATTTATTTATTGAAGAAGTTATATTAGTATCACAATATAAACTAAGAAAATTTAAAGACTTAG AAAAAAAAGTAGCCAGTTTAAATGTAGAAAGCATCAAAATTAATGAAAAGTTGGCATATGATGAT AGCCCATTTTATATAAACATATATAATAAAAAGAAAATGATGAAG Right flanking sequence: Indices 231908 -- 232407 GTACAAAAGAGTTATTGCTGGATATATTTGACGATTCTCATATCAATAGTGATCCAACTAATTTA AATAAAATTAAAAGAAAAATGTGTACAAATAAATTAGAACAACAAAAACAAAAACAAGAAGAAGA AGAAGAAGAAGAAGAAGAAGACGATAAAAAAAAAATACAAAATAATTATACTCACGATGATTCAA TGAATAATAATATAGTTGAAAATGAAAATATAAATGAATGTATAAATCAAAATACAAATGAAAAA GATCATGTTGAAGGACAAGACCAATTGGTAAGAAATAAATTGAAAAAGAAAAAATTAAATGAAGA CCAAACGAATGATAATAATAATAATAATAATAATAATAATATACAGCAGTTAAACAAAAGAGAAG AAATGATAGTATGTGGTAATCATGATCGACAGGAAAAACCAAACGATAAAGAAAATAAAAATAAG AATAAAAATAAAAATGATAGAAATAACGAACAACTTGATTCCAAT Found at i:231915 original size:8 final size:8 Alignment explanation
Indices: 231896--231916 Score: 28 Period size: 8 Copynumber: 2.6 Consensus size: 8 231886 AAAAAAAATA * * 231896 AAAAATAT 1 AAAAGTAC 231904 AAAAGTAC 1 AAAAGTAC 231912 AAAAG 1 AAAAG 231917 AGTTATTGCT Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 8 11 1.00 ACGTcount: A:0.71, C:0.05, G:0.10, T:0.14 Consensus pattern (8 bp): AAAAGTAC Left flanking sequence: Indices 231396 -- 231895 TAAGAAAGAAAATAATAATGATAAGTTACAAACGGGTAATGTTCATAAAACAAATGAAAAAGAAG ATAAGAATATTAGTAACAATTTAGCTGATACACAAGACAATAACATAGTTACCTTGTTTAATACA GATTCTTCATCTAACGACTGTTCAGATCATGGTGATATATATTCAAATGATAGATTATCAAGTAA TATACAAAACGAAGAAATAATAACAAATGTAGAAAATGAAAATAACGATGAAAAGAAAAAAGAAA ATGATGATGAACCACCTCCAACAATTTTAAACTATCTCTTACCATTAATGGAAGCCTATTTATTT ATTGAAGAAGTTATATTAGTATCACAATATAAACTAAGAAAATTTAAAGACTTAGAAAAAAAAGT AGCCAGTTTAAATGTAGAAAGCATCAAAATTAATGAAAAGTTGGCATATGATGATAGCCCATTTT ATATAAACATATATAATAAAAAGAAAATGATGAAGAAAAAAAATA Right flanking sequence: Indices 231917 -- 232416 AGTTATTGCTGGATATATTTGACGATTCTCATATCAATAGTGATCCAACTAATTTAAATAAAATT AAAAGAAAAATGTGTACAAATAAATTAGAACAACAAAAACAAAAACAAGAAGAAGAAGAAGAAGA AGAAGAAGAAGACGATAAAAAAAAAATACAAAATAATTATACTCACGATGATTCAATGAATAATA ATATAGTTGAAAATGAAAATATAAATGAATGTATAAATCAAAATACAAATGAAAAAGATCATGTT GAAGGACAAGACCAATTGGTAAGAAATAAATTGAAAAAGAAAAAATTAAATGAAGACCAAACGAA TGATAATAATAATAATAATAATAATAATAATATACAGCAGTTAAACAAAAGAGAAGAAATGATAG TATGTGGTAATCATGATCGACAGGAAAAACCAAACGATAAAGAAAATAAAAATAAGAATAAAAAT AAAAATGATAGAAATAACGAACAACTTGATTCCAATGTGAATCAT Found at i:233594 original size:9 final size:9 Alignment explanation
Indices: 233580--233597 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 233570 TTCCAACAAT 233580 TGATTTAAA 1 TGATTTAAA 233589 TGATTTAAA 1 TGATTTAAA 233598 AGAAAATGTA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.44, C:0.00, G:0.11, T:0.44 Consensus pattern (9 bp): TGATTTAAA Left flanking sequence: Indices 233080 -- 233579 AATCATCCCAATCCATTATCATATATAAATCCTGATCATTTACATTTCTTTAAATTTGTTGGAAA GTTTATAGCTAAAGCTATATATGATGGTCAAGTTATTGATGCATATTTTTGTAGATCGTTTTATA AACATATGCTTGGTCGAAAAATTCTACCAGCAGATGCAGAATCAGTAGATCCTGAATTTTATAAT AGTTTAATAAAAATATCAGAATATAAATTAGAAGATTTAAATTTAGAAATTAATTTTAGTACAGA AATTGATGAATTTGGAAAAACCAAAGTTATAGATTTAATACCTAATGGAAGAAATATTCCAGTAA CCGATGAAAATAAACATAAATATATTGAACTTTTATGTGAATTAAAAGTAACTAATAGTATAAAA GAACAGTTAGAAGCATTCATGGATGGATTTAAAGAATTAATCCAACCAAAATTAATATCTATTTT TGATGATAAAGAATTAGAACTACTTATTAGTGGTATTCCAACAAT Right flanking sequence: Indices 233598 -- 234097 AGAAAATGTAGAATATCATAATTATACTGCTAATTCTATACAAATTATTTGGTTATGGGATGTCT TACAAGAATTTGATGAAAATAAAAAAGCATCATTCTTACAATTTGTTACAGGTACAAGTAGAGTG CCATTAGGAGGATTCAAAAACCTTATGGGTATGAGAGGAGCACAAAAAATGATTATTTATAAAGC TTATGGAGAAGACCGTTTACCAACAGCGCATACTTGTTTTAATCAACTTGATTTACCAGAATATT CTTCAAAAGAATTATTGAAAAGTAAGTTAATAAGGGCTATCATGGAAGGAAAAGAAGGATTCGGT TTCATATAAGATCAAAATTAAAAGTATCTTCTATGTTAAATATTTATTATTATTAATATATATAT ATATATATATATATATATATATTATCATTTTATTATTTTTTTAATTTTTACACCTAATTAGATTA TTCTTTTTACAATCTATATATTTTATACTATTATTTTATTTTATT i:234020 original size:8 final size:8 Alignment explanation
Indices: 234009--234026 Score: 29 Period size: 8 Copynumber: 2.2 Consensus size: 8 233999 TATATATATA 234009 TTATCATT 1 TTATCATT * 234017 TTATTATT 1 TTATCATT 234025 TT 1 TT 234027 TTTAATTTTT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.22, C:0.06, G:0.00, T:0.72 Consensus pattern (8 bp): TTATCATT Left flanking sequence: Indices 233509 -- 234008 ATCCAACCAAAATTAATATCTATTTTTGATGATAAAGAATTAGAACTACTTATTAGTGGTATTCC AACAATTGATTTAAATGATTTAAAAGAAAATGTAGAATATCATAATTATACTGCTAATTCTATAC AAATTATTTGGTTATGGGATGTCTTACAAGAATTTGATGAAAATAAAAAAGCATCATTCTTACAA TTTGTTACAGGTACAAGTAGAGTGCCATTAGGAGGATTCAAAAACCTTATGGGTATGAGAGGAGC ACAAAAAATGATTATTTATAAAGCTTATGGAGAAGACCGTTTACCAACAGCGCATACTTGTTTTA ATCAACTTGATTTACCAGAATATTCTTCAAAAGAATTATTGAAAAGTAAGTTAATAAGGGCTATC ATGGAAGGAAAAGAAGGATTCGGTTTCATATAAGATCAAAATTAAAAGTATCTTCTATGTTAAAT ATTTATTATTATTAATATATATATATATATATATATATATATATA Right flanking sequence: Indices 234027 -- 234526 TTTAATTTTTACACCTAATTAGATTATTCTTTTTACAATCTATATATTTTATACTATTATTTTAT TTTATTTTTAATATATATTAATATTACATTTATTTAATTGCATGAAGCAAATTTATTATTATTTT TCCAATAACAATATAAAAAAATATTTAAACAATTAAAGATTTAAAAATTTAAAAAAAAAAAAAAA AAAAAAAAAATTTAAATAAGGTAATAATAAAAAAATGAAAAATTATATACATTTAAAAAACAAAA TAAATAATTCGATTATATGTTAATGTCTACAAAAGGAATTATAAATGAAATAGAGCATAAATTAT TACAAAAAAAAAAAAAATAAATAAATAAAATAAATAGTATATGTATAAATATATATATATATATA TATGTACGTATGCATTTGTGTATATTTTTATTTTATATAAACATTTAAGAGTTATTAATTAATTT CCATAGTTTTATTCCTTTAGTTTCCTACTGGTCTATATTTATACC Found at