TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: 97739984 P. falciparum 3D7 GENOMIC chr10 Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 1694445 ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40 Warning! 85 characters in sequence are not A, C, G, or T Found at i: i:458698 original size:36 final size:36 Alignment explanation
Indices: 458633--458801 Score: 142 Period size: 36 Copynumber: 4.7 Consensus size: 36 458623 AAACGGATGT * * * * * * * 458633 AACAA-AAAATGAAACACAAGAAAAAGAAGAACAGC 1 AACAAGAAAAGGAAAAAGAAAAACAACAAGAAAAGC * * ** * 458668 AACAAGAAAAGAAAAAAGACAAACAGGAAGAAAATC 1 AACAAGAAAAGGAAAAAGAAAAACAACAAGAAAAGC * ** ** ** ** * 458704 AAGAACTAAACCAAACGGAAAAGGAACAAGAAAAGG 1 AACAAGAAAAGGAAAAAGAAAAACAACAAGAAAAGC * ** * 458740 AACAAGAAAAGGAACAAGAAAAGGAACAAGAAAAGG 1 AACAAGAAAAGGAAAAAGAAAAACAACAAGAAAAGC * 458776 AACAAGAAAAGGAACAAGAAAAACAA 1 AACAAGAAAAGGAAAAAGAAAAACAA 458802 TCAAATGAAA Statistics Matches: 99, Mismatches: 34, Indels: 1 0.74 0.25 0.01 Matches are distributed among these distances: 35 5 0.05 36 94 0.95 ACGTcount: A:0.67, C:0.12, G:0.19, T:0.02 Consensus pattern (36 bp): AACAAGAAAAGGAAAAAGAAAAACAACAAGAAAAGC Left flanking sequence: Indices 458133 -- 458632 GATAAAGAAAATAAAAAAATATATATACATGGAACACAAAAAACAGTAGATGCAGCACAAAAAGA AATACAAAAAATTCTAAATAGATCCAAAGAAGAAATGTCAAATAATAATAATAATAATAATAGTA GTAGTAATGGTGGTGCATTCAATAATTCTTATCATGAATCTAGATATAATAACAGACATTCTAAT AATTCGTCATCTGCACATCATAGAAAATCACACAAAAGTACATCTAGATCCGCACCCAGATCTAG TCACAAGTCAGAATCGAAGAGTAAAGGTGTCTATATTAATACAAATGATGAAAAAGCTTTCCCAA GTCTTCATGATGTCACCAATATGCAATCCAAAAAAAACAAAAAGCTATCACAAAGTAACCAAACA ACCAATACTAAGAAACATGAACAAGCACCACAAATAGACAAGCAAACAAACAAAAATGAAGAAGA CAAGGAAAACCAACCCAAAAATGAAGTGCATGCAGAAACGGATGT Right flanking sequence: Indices 458802 -- 459301 TCAAATGAAAATTAAATTATCATAAAATTATTATATATATTAATAATACATACAATAAAAAAAAA AAAAAAAATAATAAAATAAAAAAAAAAGAAAAATATATAAACATTTTATACTCTTATAAATATCA AGCGAATAAATATATATATATATATATATATATTTATTTATTTATTTATTTATTTATATTCTGCT TTATTCATTTTTAAACTTTAATATATATAAATATATACATTCAATTTATACATGTGTATTTAATT ACTTCAGACTATATAATCAGTATCATAATATATATATATATATATATTAAAAAAAAAAAAATAAA ATAAAAAGTATGTAGTATTTATAAATTATATTAATATTATGTACTACCAAAAAAAAAAAAAAAAA ATAAAAATAAAAAAAAAAATAATAAAAACAAAAAAAATAAAAAAAAAGTTTTTATATAAAATTAA AAATTAAAATAAATATATAATAAAATATAAATATTAATATAGATA Found at i:458738 original size:12 final size:12 Alignment explanation
Indices: 458721--458797 Score: 154 Period size: 12 Copynumber: 6.4 Consensus size: 12 458711 AAACCAAACG 458721 GAAAAGGAACAA 1 GAAAAGGAACAA 458733 GAAAAGGAACAA 1 GAAAAGGAACAA 458745 GAAAAGGAACAA 1 GAAAAGGAACAA 458757 GAAAAGGAACAA 1 GAAAAGGAACAA 458769 GAAAAGGAACAA 1 GAAAAGGAACAA 458781 GAAAAGGAACAA 1 GAAAAGGAACAA 458793 GAAAA 1 GAAAA 458798 ACAATCAAAT Statistics Matches: 65, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 12 65 1.00 ACGTcount: A:0.68, C:0.08, G:0.25, T:0.00 Consensus pattern (12 bp): GAAAAGGAACAA Left flanking sequence: Indices 458221 -- 458720 CCAAAGAAGAAATGTCAAATAATAATAATAATAATAATAGTAGTAGTAATGGTGGTGCATTCAAT AATTCTTATCATGAATCTAGATATAATAACAGACATTCTAATAATTCGTCATCTGCACATCATAG AAAATCACACAAAAGTACATCTAGATCCGCACCCAGATCTAGTCACAAGTCAGAATCGAAGAGTA AAGGTGTCTATATTAATACAAATGATGAAAAAGCTTTCCCAAGTCTTCATGATGTCACCAATATG CAATCCAAAAAAAACAAAAAGCTATCACAAAGTAACCAAACAACCAATACTAAGAAACATGAACA AGCACCACAAATAGACAAGCAAACAAACAAAAATGAAGAAGACAAGGAAAACCAACCCAAAAATG AAGTGCATGCAGAAACGGATGTAACAAAAAATGAAACACAAGAAAAAGAAGAACAGCAACAAGAA AAGAAAAAAGACAAACAGGAAGAAAATCAAGAACTAAACCAAACG Right flanking sequence: Indices 458798 -- 459297 ACAATCAAATGAAAATTAAATTATCATAAAATTATTATATATATTAATAATACATACAATAAAAA AAAAAAAAAAAATAATAAAATAAAAAAAAAAGAAAAATATATAAACATTTTATACTCTTATAAAT ATCAAGCGAATAAATATATATATATATATATATATATTTATTTATTTATTTATTTATTTATATTC TGCTTTATTCATTTTTAAACTTTAATATATATAAATATATACATTCAATTTATACATGTGTATTT AATTACTTCAGACTATATAATCAGTATCATAATATATATATATATATATATTAAAAAAAAAAAAA TAAAATAAAAAGTATGTAGTATTTATAAATTATATTAATATTATGTACTACCAAAAAAAAAAAAA AAAAATAAAAATAAAAAAAAAAATAATAAAAACAAAAAAAATAAAAAAAAAGTTTTTATATAAAA TTAAAAATTAAAATAAATATATAATAAAATATAAATATTAATATA Found at i:458829 original size:11 final size:11 Alignment explanation
Indices: 458815--458836 Score: 37 Period size: 11 Copynumber: 2.0 Consensus size: 11 458805 AATGAAAATT 458815 AAATTATCATA 1 AAATTATCATA * 458826 AAATTATTATA 1 AAATTATCATA 458837 TATATTAATA Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 11 10 1.00 ACGTcount: A:0.55, C:0.05, G:0.00, T:0.41 Consensus pattern (11 bp): AAATTATCATA Left flanking sequence: Indices 458315 -- 458814 CAGACATTCTAATAATTCGTCATCTGCACATCATAGAAAATCACACAAAAGTACATCTAGATCCG CACCCAGATCTAGTCACAAGTCAGAATCGAAGAGTAAAGGTGTCTATATTAATACAAATGATGAA AAAGCTTTCCCAAGTCTTCATGATGTCACCAATATGCAATCCAAAAAAAACAAAAAGCTATCACA AAGTAACCAAACAACCAATACTAAGAAACATGAACAAGCACCACAAATAGACAAGCAAACAAACA AAAATGAAGAAGACAAGGAAAACCAACCCAAAAATGAAGTGCATGCAGAAACGGATGTAACAAAA AATGAAACACAAGAAAAAGAAGAACAGCAACAAGAAAAGAAAAAAGACAAACAGGAAGAAAATCA AGAACTAAACCAAACGGAAAAGGAACAAGAAAAGGAACAAGAAAAGGAACAAGAAAAGGAACAAG AAAAGGAACAAGAAAAGGAACAAGAAAAACAATCAAATGAAAATT Right flanking sequence: Indices 458837 -- 459336 TATATTAATAATACATACAATAAAAAAAAAAAAAAAAATAATAAAATAAAAAAAAAAGAAAAATA TATAAACATTTTATACTCTTATAAATATCAAGCGAATAAATATATATATATATATATATATATTT ATTTATTTATTTATTTATTTATATTCTGCTTTATTCATTTTTAAACTTTAATATATATAAATATA TACATTCAATTTATACATGTGTATTTAATTACTTCAGACTATATAATCAGTATCATAATATATAT ATATATATATATTAAAAAAAAAAAAATAAAATAAAAAGTATGTAGTATTTATAAATTATATTAAT ATTATGTACTACCAAAAAAAAAAAAAAAAAATAAAAATAAAAAAAAAAATAATAAAAACAAAAAA AATAAAAAAAAAGTTTTTATATAAAATTAAAAATTAAAATAAATATATAATAAAATATAAATATT AATATAGATATATAGTATATTTATTTATTTAATATACATACGATA Found at i:458884 original size:26 final size:26 Alignment explanation
Indices: 458846--458907 Score: 87 Period size: 25 Copynumber: 2.4 Consensus size: 26 458836 ATATATTAAT * 458846 AATACATACAATAAAAAAAAAAAAAAA 1 AATACATAAAAT-AAAAAAAAAAAAAA * 458873 AATA-ATAAAATAAAAAAAAAAGAAA 1 AATACATAAAATAAAAAAAAAAAAAA * 458898 AATATATAAA 1 AATACATAAA 458908 CATTTTATAC Statistics Matches: 32, Mismatches: 2, Indels: 3 0.86 0.05 0.08 Matches are distributed among these distances: 25 17 0.53 26 11 0.34 27 4 0.12 ACGTcount: A:0.81, C:0.03, G:0.02, T:0.15 Consensus pattern (26 bp): AATACATAAAATAAAAAAAAAAAAAA Left flanking sequence: Indices 458346 -- 458845 CATAGAAAATCACACAAAAGTACATCTAGATCCGCACCCAGATCTAGTCACAAGTCAGAATCGAA GAGTAAAGGTGTCTATATTAATACAAATGATGAAAAAGCTTTCCCAAGTCTTCATGATGTCACCA ATATGCAATCCAAAAAAAACAAAAAGCTATCACAAAGTAACCAAACAACCAATACTAAGAAACAT GAACAAGCACCACAAATAGACAAGCAAACAAACAAAAATGAAGAAGACAAGGAAAACCAACCCAA AAATGAAGTGCATGCAGAAACGGATGTAACAAAAAATGAAACACAAGAAAAAGAAGAACAGCAAC AAGAAAAGAAAAAAGACAAACAGGAAGAAAATCAAGAACTAAACCAAACGGAAAAGGAACAAGAA AAGGAACAAGAAAAGGAACAAGAAAAGGAACAAGAAAAGGAACAAGAAAAGGAACAAGAAAAACA ATCAAATGAAAATTAAATTATCATAAAATTATTATATATATTAAT Right flanking sequence: Indices 458908 -- 459407 CATTTTATACTCTTATAAATATCAAGCGAATAAATATATATATATATATATATATATTTATTTAT TTATTTATTTATTTATATTCTGCTTTATTCATTTTTAAACTTTAATATATATAAATATATACATT CAATTTATACATGTGTATTTAATTACTTCAGACTATATAATCAGTATCATAATATATATATATAT ATATATTAAAAAAAAAAAAATAAAATAAAAAGTATGTAGTATTTATAAATTATATTAATATTATG TACTACCAAAAAAAAAAAAAAAAAATAAAAATAAAAAAAAAAATAATAAAAACAAAAAAAATAAA AAAAAAGTTTTTATATAAAATTAAAAATTAAAATAAATATATAATAAAATATAAATATTAATATA GATATATAGTATATTTATTTATTTAATATACATACGATATATTATATATATGTGATAATAAATGA AAAAAAAAAAAAAAAAAAAAAAAAAAAAATATTATATATATATAT Found at i:459203 original size:15 final size:15 Alignment explanation
Indices: 459175--459238 Score: 100 Period size: 15 Copynumber: 4.3 Consensus size: 15 459165 ATGTACTACC * 459175 AAAAAAAAAAAAAAA 1 AAAAAAAAATAAAAA * 459190 AAATAAAAATAAAAA 1 AAAAAAAAATAAAAA * 459205 AAAAAATAATAAAAA 1 AAAAAAAAATAAAAA * 459220 CAAAAAAAATAAAAA 1 AAAAAAAAATAAAAA 459235 AAAA 1 AAAA 459239 GTTTTTATAT Statistics Matches: 42, Mismatches: 7, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 15 42 1.00 ACGTcount: A:0.91, C:0.02, G:0.00, T:0.08 Consensus pattern (15 bp): AAAAAAAAATAAAAA Left flanking sequence: Indices 458675 -- 459174 AAAGAAAAAAGACAAACAGGAAGAAAATCAAGAACTAAACCAAACGGAAAAGGAACAAGAAAAGG AACAAGAAAAGGAACAAGAAAAGGAACAAGAAAAGGAACAAGAAAAGGAACAAGAAAAACAATCA AATGAAAATTAAATTATCATAAAATTATTATATATATTAATAATACATACAATAAAAAAAAAAAA AAAAATAATAAAATAAAAAAAAAAGAAAAATATATAAACATTTTATACTCTTATAAATATCAAGC GAATAAATATATATATATATATATATATATTTATTTATTTATTTATTTATTTATATTCTGCTTTA TTCATTTTTAAACTTTAATATATATAAATATATACATTCAATTTATACATGTGTATTTAATTACT TCAGACTATATAATCAGTATCATAATATATATATATATATATATTAAAAAAAAAAAAATAAAATA AAAAGTATGTAGTATTTATAAATTATATTAATATTATGTACTACC Right flanking sequence: Indices 459239 -- 459738 GTTTTTATATAAAATTAAAAATTAAAATAAATATATAATAAAATATAAATATTAATATAGATATA TAGTATATTTATTTATTTAATATACATACGATATATTATATATATGTGATAATAAATGAAAAAAA AAAAAAAAAAAAAAAAAAAAAAATATTATATATATATATACATATATATATCCAAATTCACATTT AAAATTTATGCATGTGGTGTTTTGTATATACGTCTATTAAATAATTTATAATATGGAAATACATA TATAATTATCTCAATAATATATATATATATATATATATATATATAGATAGATATATTTAAATACC AATTTATTGTATTGTTTTAAAATTTTTAACTACTCATATAATAAAAATGCACCTTTTTATAATAT TTTGATCACATAATAATGTATGCATATATATATATATATATATATATATATAGTTAAATAAATAA AATAAAATTAAACTCATTTTAAACACGAACATTTTTAACTTTACT Found at i:459203 original size:18 final size:18 Alignment explanation
Indices: 459176--459238 Score: 105 Period size: 18 Copynumber: 3.5 Consensus size: 18 459166 TGTACTACCA 459176 AAAAAAAAAAAAAAAAAT 1 AAAAAAAAAAAAAAAAAT * 459194 AAAAATAAAAAAAAAAAT 1 AAAAAAAAAAAAAAAAAT * * 459212 AATAAAAACAAAAAAAAT 1 AAAAAAAAAAAAAAAAAT 459230 AAAAAAAAA 1 AAAAAAAAA 459239 GTTTTTATAT Statistics Matches: 39, Mismatches: 6, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 18 39 1.00 ACGTcount: A:0.90, C:0.02, G:0.00, T:0.08 Consensus pattern (18 bp): AAAAAAAAAAAAAAAAAT Left flanking sequence: Indices 458676 -- 459175 AAGAAAAAAGACAAACAGGAAGAAAATCAAGAACTAAACCAAACGGAAAAGGAACAAGAAAAGGA ACAAGAAAAGGAACAAGAAAAGGAACAAGAAAAGGAACAAGAAAAGGAACAAGAAAAACAATCAA ATGAAAATTAAATTATCATAAAATTATTATATATATTAATAATACATACAATAAAAAAAAAAAAA AAAATAATAAAATAAAAAAAAAAGAAAAATATATAAACATTTTATACTCTTATAAATATCAAGCG AATAAATATATATATATATATATATATATTTATTTATTTATTTATTTATTTATATTCTGCTTTAT TCATTTTTAAACTTTAATATATATAAATATATACATTCAATTTATACATGTGTATTTAATTACTT CAGACTATATAATCAGTATCATAATATATATATATATATATATTAAAAAAAAAAAAATAAAATAA AAAGTATGTAGTATTTATAAATTATATTAATATTATGTACTACCA Right flanking sequence: Indices 459239 -- 459738 GTTTTTATATAAAATTAAAAATTAAAATAAATATATAATAAAATATAAATATTAATATAGATATA TAGTATATTTATTTATTTAATATACATACGATATATTATATATATGTGATAATAAATGAAAAAAA AAAAAAAAAAAAAAAAAAAAAAATATTATATATATATATACATATATATATCCAAATTCACATTT AAAATTTATGCATGTGGTGTTTTGTATATACGTCTATTAAATAATTTATAATATGGAAATACATA TATAATTATCTCAATAATATATATATATATATATATATATATATAGATAGATATATTTAAATACC AATTTATTGTATTGTTTTAAAATTTTTAACTACTCATATAATAAAAATGCACCTTTTTATAATAT TTTGATCACATAATAATGTATGCATATATATATATATATATATATATATATAGTTAAATAAATAA AATAAAATTAAACTCATTTTAAACACGAACATTTTTAACTTTACT Found at i:459272 original size:24 final size:24 Alignment explanation
Indices: 459176--459297 Score: 95 Period size: 24 Copynumber: 5.0 Consensus size: 24 459166 TGTACTACCA * * * 459176 AAAAAAAAAAAAAAAAATAAAAAT 1 AAAATAAAAAATAAAAATAAATAT * * * * * 459200 AAAAAAAAAAATAATAAAAACAAAA 1 AAAATAAAAAATAA-AAATAAATAT * *** ** 459225 AAAATAAAAAAAAAGTTTTTATAT 1 AAAATAAAAAATAAAAATAAATAT * * 459249 AAAATTAAAAATTAAAATAAATAT 1 AAAATAAAAAATAAAAATAAATAT * * * * 459273 ATAATAAAATATAAATATTAATAT 1 AAAATAAAAAATAAAAATAAATAT 459297 A 1 A 459298 GATATATAGT Statistics Matches: 69, Mismatches: 28, Indels: 2 0.70 0.28 0.02 Matches are distributed among these distances: 24 50 0.72 25 19 0.28 ACGTcount: A:0.75, C:0.01, G:0.01, T:0.23 Consensus pattern (24 bp): AAAATAAAAAATAAAAATAAATAT Left flanking sequence: Indices 458676 -- 459175 AAGAAAAAAGACAAACAGGAAGAAAATCAAGAACTAAACCAAACGGAAAAGGAACAAGAAAAGGA ACAAGAAAAGGAACAAGAAAAGGAACAAGAAAAGGAACAAGAAAAGGAACAAGAAAAACAATCAA ATGAAAATTAAATTATCATAAAATTATTATATATATTAATAATACATACAATAAAAAAAAAAAAA AAAATAATAAAATAAAAAAAAAAGAAAAATATATAAACATTTTATACTCTTATAAATATCAAGCG AATAAATATATATATATATATATATATATTTATTTATTTATTTATTTATTTATATTCTGCTTTAT TCATTTTTAAACTTTAATATATATAAATATATACATTCAATTTATACATGTGTATTTAATTACTT CAGACTATATAATCAGTATCATAATATATATATATATATATATTAAAAAAAAAAAAATAAAATAA AAAGTATGTAGTATTTATAAATTATATTAATATTATGTACTACCA Right flanking sequence: Indices 459298 -- 459797 GATATATAGTATATTTATTTATTTAATATACATACGATATATTATATATATGTGATAATAAATGA AAAAAAAAAAAAAAAAAAAAAAAAAAAAATATTATATATATATATACATATATATATCCAAATTC ACATTTAAAATTTATGCATGTGGTGTTTTGTATATACGTCTATTAAATAATTTATAATATGGAAA TACATATATAATTATCTCAATAATATATATATATATATATATATATATATAGATAGATATATTTA AATACCAATTTATTGTATTGTTTTAAAATTTTTAACTACTCATATAATAAAAATGCACCTTTTTA TAATATTTTGATCACATAATAATGTATGCATATATATATATATATATATATATATATAGTTAAAT AAATAAAATAAAATTAAACTCATTTTAAACACGAACATTTTTAACTTTACTAAATTATTTTAAGA CCATTAATATTTATAAGAACATGAAATAATATAAAATTTAAAATG Found at i:459303 original size:30 final size:29 Alignment explanation
Indices: 459188--459305 Score: 95 Period size: 30 Copynumber: 3.9 Consensus size: 29 459178 AAAAAAAAAA * * * * * 459188 AAAAATAAAAATAAAAAAAAAAATAATAAA 1 AAAATTAAAAATTAAAATAAATAT-ATAAT * ** * * * * 459218 AACAAAAAAAATAAAAAAAAAGTTTTTATAT 1 AAAATTAAAAATTAAAATAAA-TATATA-AT 459249 AAAATTAAAAATTAAAATAAATATATAAT 1 AAAATTAAAAATTAAAATAAATATATAAT * * * 459278 AAAATATAAATATTAATATAGATATATA 1 AAAAT-TAAAAATTAAAATAAATATATA 459306 GTATATTTAT Statistics Matches: 69, Mismatches: 16, Indels: 6 0.76 0.18 0.07 Matches are distributed among these distances: 29 7 0.10 30 44 0.64 31 18 0.26 ACGTcount: A:0.71, C:0.01, G:0.02, T:0.26 Consensus pattern (29 bp): AAAATTAAAAATTAAAATAAATATATAAT Left flanking sequence: Indices 458688 -- 459187 AAACAGGAAGAAAATCAAGAACTAAACCAAACGGAAAAGGAACAAGAAAAGGAACAAGAAAAGGA ACAAGAAAAGGAACAAGAAAAGGAACAAGAAAAGGAACAAGAAAAACAATCAAATGAAAATTAAA TTATCATAAAATTATTATATATATTAATAATACATACAATAAAAAAAAAAAAAAAAATAATAAAA TAAAAAAAAAAGAAAAATATATAAACATTTTATACTCTTATAAATATCAAGCGAATAAATATATA TATATATATATATATATTTATTTATTTATTTATTTATTTATATTCTGCTTTATTCATTTTTAAAC TTTAATATATATAAATATATACATTCAATTTATACATGTGTATTTAATTACTTCAGACTATATAA TCAGTATCATAATATATATATATATATATATTAAAAAAAAAAAAATAAAATAAAAAGTATGTAGT ATTTATAAATTATATTAATATTATGTACTACCAAAAAAAAAAAAA Right flanking sequence: Indices 459306 -- 459805 GTATATTTATTTATTTAATATACATACGATATATTATATATATGTGATAATAAATGAAAAAAAAA AAAAAAAAAAAAAAAAAAAAATATTATATATATATATACATATATATATCCAAATTCACATTTAA AATTTATGCATGTGGTGTTTTGTATATACGTCTATTAAATAATTTATAATATGGAAATACATATA TAATTATCTCAATAATATATATATATATATATATATATATATAGATAGATATATTTAAATACCAA TTTATTGTATTGTTTTAAAATTTTTAACTACTCATATAATAAAAATGCACCTTTTTATAATATTT TGATCACATAATAATGTATGCATATATATATATATATATATATATATATAGTTAAATAAATAAAA TAAAATTAAACTCATTTTAAACACGAACATTTTTAACTTTACTAAATTATTTTAAGACCATTAAT ATTTATAAGAACATGAAATAATATAAAATTTAAAATGCTGTTATT Found at i:459518 original size:19 final size:18 Alignment explanation
Indices: 459472--459526 Score: 55 Period size: 19 Copynumber: 2.9 Consensus size: 18 459462 TACGTCTATT * * 459472 AAATAATTTATAATATGG 1 AAATAATATATAATATCG * 459490 AAATACATATATAATTATCT 1 AAATA-ATATATAA-TATCG * 459510 CAATAATATATATATAT 1 AAATAATATATA-ATAT 459527 ATATATATAT Statistics Matches: 30, Mismatches: 4, Indels: 5 0.77 0.10 0.13 Matches are distributed among these distances: 18 5 0.17 19 17 0.57 20 8 0.27 ACGTcount: A:0.51, C:0.05, G:0.04, T:0.40 Consensus pattern (18 bp): AAATAATATATAATATCG Left flanking sequence: Indices 458972 -- 459471 TTTATTTATTTATTTATATTCTGCTTTATTCATTTTTAAACTTTAATATATATAAATATATACAT TCAATTTATACATGTGTATTTAATTACTTCAGACTATATAATCAGTATCATAATATATATATATA TATATATTAAAAAAAAAAAAATAAAATAAAAAGTATGTAGTATTTATAAATTATATTAATATTAT GTACTACCAAAAAAAAAAAAAAAAAATAAAAATAAAAAAAAAAATAATAAAAACAAAAAAAATAA AAAAAAAGTTTTTATATAAAATTAAAAATTAAAATAAATATATAATAAAATATAAATATTAATAT AGATATATAGTATATTTATTTATTTAATATACATACGATATATTATATATATGTGATAATAAATG AAAAAAAAAAAAAAAAAAAAAAAAAAAAAATATTATATATATATATACATATATATATCCAAATT CACATTTAAAATTTATGCATGTGGTGTTTTGTATATACGTCTATT Right flanking sequence: Indices 459527 -- 460026 ATATATATATATATATAGATAGATATATTTAAATACCAATTTATTGTATTGTTTTAAAATTTTTA ACTACTCATATAATAAAAATGCACCTTTTTATAATATTTTGATCACATAATAATGTATGCATATA TATATATATATATATATATATATAGTTAAATAAATAAAATAAAATTAAACTCATTTTAAACACGA ACATTTTTAACTTTACTAAATTATTTTAAGACCATTAATATTTATAAGAACATGAAATAATATAA AATTTAAAATGCTGTTATTATATTTAAAGGAATAAAAAAAAATATACGACCTATACTATTTATTA CACCTGAAAAAATTGTCTATTAAATGTATCCCTTTTTATGTAAGAAGGGTGAAAAAATATATGAA TAGTTATAAAATATATATAATAAAATATATATTTTATTGTAGTTATATACATTTTTTCCATAATA AATAATAGACCCTATTAATACATCTTTTAAAAGATAGTGGTTCAT Found at i:460930 original size:14 final size:14 Alignment explanation
Indices: 460908--460938 Score: 55 Period size: 14 Copynumber: 2.2 Consensus size: 14 460898 TATTCTATAA 460908 AAAAAAAATAAAAT 1 AAAAAAAATAAAAT * 460922 AAAATAAATAAAAT 1 AAAAAAAATAAAAT 460936 AAA 1 AAA 460939 TATTATATTA Statistics Matches: 16, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 14 16 1.00 ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16 Consensus pattern (14 bp): AAAAAAAATAAAAT Left flanking sequence: Indices 460408 -- 460907 AATTATCCTTTTCCCATCTACTCCATTTCCTACTCATCTTGTTAAGGCAAAACTAATTTAAAAAA ATAATAAAAATAAAAATAATAAATAAATAAATAAATAAATATATATATATATATTCAAAATTAAT ATCACATAAGAAATATATACAAGGAGATGCAAAAAACATTTTTGGCTCACCTCAAAATTTTCAAC ATCAGCAACATAAGTTGAGGATTTCAATTTTTTAATTATATTTAAATATTTGCATATACTTTTCA AAAGATGTTCTTTTGACAAGTGGAAATTTTTATAAAATACATAAGCATGTGCTAGAAAGCCTATA AAAAAAAAAGAGAATCATTATAAAATTAAATAATTAAATATATATATATATATATATATATAAAC ATTTTGTTCTTTATTATTTTACTTAGTTTATTTTCTTCACATAAGTTCTCAAGATGAGAAATATA TTCCATACAATATTCACTGGGTGATACATCATCACTATTCTATAA Right flanking sequence: Indices 460939 -- 461438 TATTATATTATATATATATATATATATATATATATATATATATAGAATTATACTGTGTTACTATT TATGGAACTAAAAAAAAAAAATAACAATATTTTAACATATATATCTTAAATTTTTATTAAAAGGC TTTTTTTTTTTTTTTTTTTTTATTTATTACCTCAACTACTGATGACACATATATAATATCATCAT ACAAATGGTTTGTCAACTGCATAGGACCATTATAAATAAGGATTGAAAAATATGTTTTGTTTTCC AAGAAAAGGTCGTCAATTTTTAAGAAAATGTTGTATAAGTCCATAAGAAATTGTAAAAATGTCTA TTAGAAGAAATAAAAATTATGTAGCAAATATATACACACATATATATATATAATATATTTATATA TATATATATATTTCTATATATATATGTTTTATTCTTATCCGTACTTGTCTGGTAAAATTAGAATT ATAATCATTTATATTTCTAAAAATTTCCTTGTTTTTTTCTTTCTC Found at i:461320 original size:23 final size:23 Alignment explanation
Indices: 461293--461338 Score: 64 Period size: 23 Copynumber: 2.0 Consensus size: 23 461283 TGTAGCAAAT 461293 ATATACACACATATATATATATA 1 ATATACACACATATATATATATA *** * 461316 ATATATTTATATATATATATATA 1 ATATACACACATATATATATATA 461339 TTTCTATATA Statistics Matches: 19, Mismatches: 4, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 23 19 1.00 ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43 Consensus pattern (23 bp): ATATACACACATATATATATATA Left flanking sequence: Indices 460793 -- 461292 TAAACATTTTGTTCTTTATTATTTTACTTAGTTTATTTTCTTCACATAAGTTCTCAAGATGAGAA ATATATTCCATACAATATTCACTGGGTGATACATCATCACTATTCTATAAAAAAAAAATAAAATA AAATAAATAAAATAAATATTATATTATATATATATATATATATATATATATATATATATAGAATT ATACTGTGTTACTATTTATGGAACTAAAAAAAAAAAATAACAATATTTTAACATATATATCTTAA ATTTTTATTAAAAGGCTTTTTTTTTTTTTTTTTTTTTATTTATTACCTCAACTACTGATGACACA TATATAATATCATCATACAAATGGTTTGTCAACTGCATAGGACCATTATAAATAAGGATTGAAAA ATATGTTTTGTTTTCCAAGAAAAGGTCGTCAATTTTTAAGAAAATGTTGTATAAGTCCATAAGAA ATTGTAAAAATGTCTATTAGAAGAAATAAAAATTATGTAGCAAAT Right flanking sequence: Indices 461339 -- 461838 TTTCTATATATATATGTTTTATTCTTATCCGTACTTGTCTGGTAAAATTAGAATTATAATCATTT ATATTTCTAAAAATTTCCTTGTTTTTTTCTTTCTCTTTTAAATTTTCATTTTCTATTTTGGCTAA CGTCGGTAGCACTTCATTTCTTACAAAAAGGCTTGAAAAAAAAAAAAAAAAAAAATAAATAAATA AATAAATAAATAAAATATATAATATATAATTATAATGAGGTTATATTTAACAAATACCTCAATTG GACAGTTCATAATATTACACAAAAATAATTAAATATATATAATTATATACATTATCTATAATATA TGTTAATTTTTGTATTAATAATATTTCCTTTCTTTTCTTCTTTCTTACTGAGTTTCGTGGTAATT ATATGTATCTCTCAAATTATAGTTTATATTATTTTTGTCTACTCCACTTCTTTTCCTATAATCGT TTATTCTTTGTATTTGAATTTCTTTATAGTTTATAAATTTCTTAG Found at i:461557 original size:12 final size:12 Alignment explanation
Indices: 461508--461557 Score: 49 Period size: 12 Copynumber: 4.1 Consensus size: 12 461498 GGCTTGAAAA * * * 461508 AAAAAAAAAAAA 1 AAAATAAATAAT * 461520 AAAATAAATAAA 1 AAAATAAATAAT * 461532 TAAATAAATAAAT 1 AAAATAAAT-AAT * 461545 AAAATATATAAT 1 AAAATAAATAAT 461557 A 1 A 461558 TATAATTATA Statistics Matches: 31, Mismatches: 6, Indels: 2 0.79 0.15 0.05 Matches are distributed among these distances: 12 22 0.71 13 9 0.29 ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20 Consensus pattern (12 bp): AAAATAAATAAT Left flanking sequence: Indices 461008 -- 461507 GAACTAAAAAAAAAAAATAACAATATTTTAACATATATATCTTAAATTTTTATTAAAAGGCTTTT TTTTTTTTTTTTTTTTTATTTATTACCTCAACTACTGATGACACATATATAATATCATCATACAA ATGGTTTGTCAACTGCATAGGACCATTATAAATAAGGATTGAAAAATATGTTTTGTTTTCCAAGA AAAGGTCGTCAATTTTTAAGAAAATGTTGTATAAGTCCATAAGAAATTGTAAAAATGTCTATTAG AAGAAATAAAAATTATGTAGCAAATATATACACACATATATATATATAATATATTTATATATATA TATATATTTCTATATATATATGTTTTATTCTTATCCGTACTTGTCTGGTAAAATTAGAATTATAA TCATTTATATTTCTAAAAATTTCCTTGTTTTTTTCTTTCTCTTTTAAATTTTCATTTTCTATTTT GGCTAACGTCGGTAGCACTTCATTTCTTACAAAAAGGCTTGAAAA Right flanking sequence: Indices 461558 -- 462057 TATAATTATAATGAGGTTATATTTAACAAATACCTCAATTGGACAGTTCATAATATTACACAAAA ATAATTAAATATATATAATTATATACATTATCTATAATATATGTTAATTTTTGTATTAATAATAT TTCCTTTCTTTTCTTCTTTCTTACTGAGTTTCGTGGTAATTATATGTATCTCTCAAATTATAGTT TATATTATTTTTGTCTACTCCACTTCTTTTCCTATAATCGTTTATTCTTTGTATTTGAATTTCTT TATAGTTTATAAATTTCTTAGCATAAAGATTATAATGTTTTTTTTGGATGACATTTCTATTTAAA TATCCTAATGGGCCTTTCAAAAACTTCCTTCTCTGTTTATGATGATATATCTTTTCATTATGTAT GTTCGAAAAAAATGTAAACATCAATATAATAATCTTCCTTATCATATTTTACATCTTCTCACATT TTATCACTTTTTAAAATAAAAAAAATAAATATTAAAAAAATTAAA Found at i:461557 original size:16 final size:17 Alignment explanation
Indices: 461504--461555 Score: 62 Period size: 17 Copynumber: 3.1 Consensus size: 17 461494 AAAAGGCTTG * * * * 461504 AAAAAAAAAAAAAAAAA 1 AAATAAATAAAATAAAT 461521 AAATAAAT-AAATAAAT 1 AAATAAATAAAATAAAT * 461537 AAATAAATAAAATATAT 1 AAATAAATAAAATAAAT 461554 AA 1 AA 461556 TATATAATTA Statistics Matches: 29, Mismatches: 5, Indels: 2 0.81 0.14 0.06 Matches are distributed among these distances: 16 14 0.48 17 15 0.52 ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17 Consensus pattern (17 bp): AAATAAATAAAATAAAT Left flanking sequence: Indices 461004 -- 461503 TATGGAACTAAAAAAAAAAAATAACAATATTTTAACATATATATCTTAAATTTTTATTAAAAGGC TTTTTTTTTTTTTTTTTTTTTATTTATTACCTCAACTACTGATGACACATATATAATATCATCAT ACAAATGGTTTGTCAACTGCATAGGACCATTATAAATAAGGATTGAAAAATATGTTTTGTTTTCC AAGAAAAGGTCGTCAATTTTTAAGAAAATGTTGTATAAGTCCATAAGAAATTGTAAAAATGTCTA TTAGAAGAAATAAAAATTATGTAGCAAATATATACACACATATATATATATAATATATTTATATA TATATATATATTTCTATATATATATGTTTTATTCTTATCCGTACTTGTCTGGTAAAATTAGAATT ATAATCATTTATATTTCTAAAAATTTCCTTGTTTTTTTCTTTCTCTTTTAAATTTTCATTTTCTA TTTTGGCTAACGTCGGTAGCACTTCATTTCTTACAAAAAGGCTTG Right flanking sequence: Indices 461556 -- 462055 TATATAATTATAATGAGGTTATATTTAACAAATACCTCAATTGGACAGTTCATAATATTACACAA AAATAATTAAATATATATAATTATATACATTATCTATAATATATGTTAATTTTTGTATTAATAAT ATTTCCTTTCTTTTCTTCTTTCTTACTGAGTTTCGTGGTAATTATATGTATCTCTCAAATTATAG TTTATATTATTTTTGTCTACTCCACTTCTTTTCCTATAATCGTTTATTCTTTGTATTTGAATTTC TTTATAGTTTATAAATTTCTTAGCATAAAGATTATAATGTTTTTTTTGGATGACATTTCTATTTA AATATCCTAATGGGCCTTTCAAAAACTTCCTTCTCTGTTTATGATGATATATCTTTTCATTATGT ATGTTCGAAAAAAATGTAAACATCAATATAATAATCTTCCTTATCATATTTTACATCTTCTCACA TTTTATCACTTTTTAAAATAAAAAAAATAAATATTAAAAAAATTA Found at i:461569 original size:13 final size:14 Alignment explanation
Indices: 461520--461569 Score: 51 Period size: 13 Copynumber: 3.9 Consensus size: 14 461510 AAAAAAAAAA * 461520 AAAATAAATAA-AT 1 AAAATATATAATAT * 461533 -AAATAAATAA-AT 1 AAAATATATAATAT 461545 AAAATATATAATAT 1 AAAATATATAATAT * 461559 ATAAT-TATAAT 1 AAAATATATAAT 461570 GAGGTTATAT Statistics Matches: 33, Mismatches: 2, Indels: 4 0.85 0.05 0.10 Matches are distributed among these distances: 12 12 0.36 13 15 0.45 14 6 0.18 ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32 Consensus pattern (14 bp): AAAATATATAATAT Left flanking sequence: Indices 461020 -- 461519 AAAAATAACAATATTTTAACATATATATCTTAAATTTTTATTAAAAGGCTTTTTTTTTTTTTTTT TTTTTATTTATTACCTCAACTACTGATGACACATATATAATATCATCATACAAATGGTTTGTCAA CTGCATAGGACCATTATAAATAAGGATTGAAAAATATGTTTTGTTTTCCAAGAAAAGGTCGTCAA TTTTTAAGAAAATGTTGTATAAGTCCATAAGAAATTGTAAAAATGTCTATTAGAAGAAATAAAAA TTATGTAGCAAATATATACACACATATATATATATAATATATTTATATATATATATATATTTCTA TATATATATGTTTTATTCTTATCCGTACTTGTCTGGTAAAATTAGAATTATAATCATTTATATTT CTAAAAATTTCCTTGTTTTTTTCTTTCTCTTTTAAATTTTCATTTTCTATTTTGGCTAACGTCGG TAGCACTTCATTTCTTACAAAAAGGCTTGAAAAAAAAAAAAAAAA Right flanking sequence: Indices 461570 -- 462069 GAGGTTATATTTAACAAATACCTCAATTGGACAGTTCATAATATTACACAAAAATAATTAAATAT ATATAATTATATACATTATCTATAATATATGTTAATTTTTGTATTAATAATATTTCCTTTCTTTT CTTCTTTCTTACTGAGTTTCGTGGTAATTATATGTATCTCTCAAATTATAGTTTATATTATTTTT GTCTACTCCACTTCTTTTCCTATAATCGTTTATTCTTTGTATTTGAATTTCTTTATAGTTTATAA ATTTCTTAGCATAAAGATTATAATGTTTTTTTTGGATGACATTTCTATTTAAATATCCTAATGGG CCTTTCAAAAACTTCCTTCTCTGTTTATGATGATATATCTTTTCATTATGTATGTTCGAAAAAAA TGTAAACATCAATATAATAATCTTCCTTATCATATTTTACATCTTCTCACATTTTATCACTTTTT AAAATAAAAAAAATAAATATTAAAAAAATTAAAAAAATAATTTAA Found at i:462073 original size:25 final size:24 Alignment explanation
Indices: 462025--462073 Score: 68 Period size: 24 Copynumber: 2.0 Consensus size: 24 462015 ATCACTTTTT * 462025 AAAATAAAAAAAATAAATATTAAA 1 AAAATAAAAAAAATAAATAATAAA * * 462049 AAAATTAAAAAAATAATTTAATAAA 1 AAAATAAAAAAAATAA-ATAATAAA 462074 TGGTAAATGG Statistics Matches: 21, Mismatches: 3, Indels: 1 0.84 0.12 0.04 Matches are distributed among these distances: 24 15 0.71 25 6 0.29 ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24 Consensus pattern (24 bp): AAAATAAAAAAAATAAATAATAAA Left flanking sequence: Indices 461525 -- 462024 AAATAAATAAATAAATAAATAAAATATATAATATATAATTATAATGAGGTTATATTTAACAAATA CCTCAATTGGACAGTTCATAATATTACACAAAAATAATTAAATATATATAATTATATACATTATC TATAATATATGTTAATTTTTGTATTAATAATATTTCCTTTCTTTTCTTCTTTCTTACTGAGTTTC GTGGTAATTATATGTATCTCTCAAATTATAGTTTATATTATTTTTGTCTACTCCACTTCTTTTCC TATAATCGTTTATTCTTTGTATTTGAATTTCTTTATAGTTTATAAATTTCTTAGCATAAAGATTA TAATGTTTTTTTTGGATGACATTTCTATTTAAATATCCTAATGGGCCTTTCAAAAACTTCCTTCT CTGTTTATGATGATATATCTTTTCATTATGTATGTTCGAAAAAAATGTAAACATCAATATAATAA TCTTCCTTATCATATTTTACATCTTCTCACATTTTATCACTTTTT Right flanking sequence: Indices 462074 -- 462573 TGGTAAATGGAAAAATATAATTAAATTCACACGAATGAAATAAAAATGTGTATAAATAAAATATA TACATATCATATACACATATATATATATATTTTATATATATATATATATATATATATATTATGCA TATAATATTTTAATATCTTTCTTAAATTTTCGTACTTAACATTTTAAAACAATTTAACAAAAGAA ATTATTTATAGGTTATCAATATACTCTTTAATTATGCATTTTCAAATAAACCAAAAAAGAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAATACCATAGTAATTATATATTATAATATAATACATAAA TATTATTCCATATACATTCTAATTTAAAAAAAATGTATATAAATATAAATGAATCAATATTATTA TATGTATATATATTATATAATATTTTGTTATAATTAAAATAAAAATATATGTCATTATATATATA TATATATATATATATATATATACATATATATAATACATTTATCCG Found at i:462074 original size:12 final size:12 Alignment explanation
Indices: 462036--462074 Score: 36 Period size: 12 Copynumber: 3.6 Consensus size: 12 462026 AAATAAAAAA 462036 AATAAAT-A-TT 1 AATAAATAATTT * 462046 AA-AAA-AATTA 1 AATAAATAATTT * 462056 AAAAAATAATTT 1 AATAAATAATTT 462068 AATAAAT 1 AATAAAT 462075 GGTAAATGGA Statistics Matches: 22, Mismatches: 3, Indels: 6 0.71 0.10 0.19 Matches are distributed among these distances: 9 4 0.18 10 5 0.23 11 3 0.14 12 10 0.45 ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31 Consensus pattern (12 bp): AATAAATAATTT Left flanking sequence: Indices 461536 -- 462035 TAAATAAATAAAATATATAATATATAATTATAATGAGGTTATATTTAACAAATACCTCAATTGGA CAGTTCATAATATTACACAAAAATAATTAAATATATATAATTATATACATTATCTATAATATATG TTAATTTTTGTATTAATAATATTTCCTTTCTTTTCTTCTTTCTTACTGAGTTTCGTGGTAATTAT ATGTATCTCTCAAATTATAGTTTATATTATTTTTGTCTACTCCACTTCTTTTCCTATAATCGTTT ATTCTTTGTATTTGAATTTCTTTATAGTTTATAAATTTCTTAGCATAAAGATTATAATGTTTTTT TTGGATGACATTTCTATTTAAATATCCTAATGGGCCTTTCAAAAACTTCCTTCTCTGTTTATGAT GATATATCTTTTCATTATGTATGTTCGAAAAAAATGTAAACATCAATATAATAATCTTCCTTATC ATATTTTACATCTTCTCACATTTTATCACTTTTTAAAATAAAAAA Right flanking sequence: Indices 462075 -- 462574 GGTAAATGGAAAAATATAATTAAATTCACACGAATGAAATAAAAATGTGTATAAATAAAATATAT ACATATCATATACACATATATATATATATTTTATATATATATATATATATATATATATTATGCAT ATAATATTTTAATATCTTTCTTAAATTTTCGTACTTAACATTTTAAAACAATTTAACAAAAGAAA TTATTTATAGGTTATCAATATACTCTTTAATTATGCATTTTCAAATAAACCAAAAAAGAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAATACCATAGTAATTATATATTATAATATAATACATAAAT ATTATTCCATATACATTCTAATTTAAAAAAAATGTATATAAATATAAATGAATCAATATTATTAT ATGTATATATATTATATAATATTTTGTTATAATTAAAATAAAAATATATGTCATTATATATATAT ATATATATATATATATATATACATATATATAATACATTTATCCGA Found at i:462167 original size:27 final size:27 Alignment explanation
Indices: 462134--462207 Score: 86 Period size: 27 Copynumber: 2.7 Consensus size: 27 462124 TATAAATAAA * 462134 ATATATACATATCATATACACATATAT 1 ATATATATATATCATATACACATATAT * * * 462161 ATATATATTTTAT-ATATATATATATAT 1 ATATATA-TATATCATATACACATATAT 462188 ATATATATATTATGCATATA 1 ATATATATA-TAT-CATATA 462208 ATATTTTAAT Statistics Matches: 38, Mismatches: 5, Indels: 6 0.78 0.10 0.12 Matches are distributed among these distances: 26 1 0.03 27 29 0.76 28 3 0.08 29 5 0.13 ACGTcount: A:0.46, C:0.07, G:0.01, T:0.46 Consensus pattern (27 bp): ATATATATATATCATATACACATATAT Left flanking sequence: Indices 461634 -- 462133 TATATAATTATATACATTATCTATAATATATGTTAATTTTTGTATTAATAATATTTCCTTTCTTT TCTTCTTTCTTACTGAGTTTCGTGGTAATTATATGTATCTCTCAAATTATAGTTTATATTATTTT TGTCTACTCCACTTCTTTTCCTATAATCGTTTATTCTTTGTATTTGAATTTCTTTATAGTTTATA AATTTCTTAGCATAAAGATTATAATGTTTTTTTTGGATGACATTTCTATTTAAATATCCTAATGG GCCTTTCAAAAACTTCCTTCTCTGTTTATGATGATATATCTTTTCATTATGTATGTTCGAAAAAA ATGTAAACATCAATATAATAATCTTCCTTATCATATTTTACATCTTCTCACATTTTATCACTTTT TAAAATAAAAAAAATAAATATTAAAAAAATTAAAAAAATAATTTAATAAATGGTAAATGGAAAAA TATAATTAAATTCACACGAATGAAATAAAAATGTGTATAAATAAA Right flanking sequence: Indices 462208 -- 462707 ATATTTTAATATCTTTCTTAAATTTTCGTACTTAACATTTTAAAACAATTTAACAAAAGAAATTA TTTATAGGTTATCAATATACTCTTTAATTATGCATTTTCAAATAAACCAAAAAAGAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAATACCATAGTAATTATATATTATAATATAATACATAAATATT ATTCCATATACATTCTAATTTAAAAAAAATGTATATAAATATAAATGAATCAATATTATTATATG TATATATATTATATAATATTTTGTTATAATTAAAATAAAAATATATGTCATTATATATATATATA TATATATATATATATATACATATATATAATACATTTATCCGATATTGTAGTCATGTATATTTTCT TTCCTAAAACATAATTTTGGCTATATAAAAAATTTTGAAAAAAACAAAATTGATATAATATATTT TCATACTTTTTATTTTTTATTCTTTTGTTTTTATATTTAGATGAA Found at i:462206 original size:23 final size:23 Alignment explanation
Indices: 462134--462211 Score: 78 Period size: 25 Copynumber: 3.3 Consensus size: 23 462124 TATAAATAAA * * 462134 ATATATACATATCATATACACATAT 1 ATATATATATAT-AT-TATACATAT * * 462159 ATATATATATTTTATATATATATAT 1 ATATATATA-TATAT-TATACATAT * 462184 ATATATATATATATTATGCATAT 1 ATATATATATATATTATACATAT 462207 A-ATAT 1 ATATAT 462212 TTTAATATCT Statistics Matches: 45, Mismatches: 7, Indels: 5 0.79 0.12 0.09 Matches are distributed among these distances: 22 4 0.09 23 8 0.18 24 4 0.09 25 27 0.60 26 2 0.04 ACGTcount: A:0.46, C:0.06, G:0.01, T:0.46 Consensus pattern (23 bp): ATATATATATATATTATACATAT Left flanking sequence: Indices 461634 -- 462133 TATATAATTATATACATTATCTATAATATATGTTAATTTTTGTATTAATAATATTTCCTTTCTTT TCTTCTTTCTTACTGAGTTTCGTGGTAATTATATGTATCTCTCAAATTATAGTTTATATTATTTT TGTCTACTCCACTTCTTTTCCTATAATCGTTTATTCTTTGTATTTGAATTTCTTTATAGTTTATA AATTTCTTAGCATAAAGATTATAATGTTTTTTTTGGATGACATTTCTATTTAAATATCCTAATGG GCCTTTCAAAAACTTCCTTCTCTGTTTATGATGATATATCTTTTCATTATGTATGTTCGAAAAAA ATGTAAACATCAATATAATAATCTTCCTTATCATATTTTACATCTTCTCACATTTTATCACTTTT TAAAATAAAAAAAATAAATATTAAAAAAATTAAAAAAATAATTTAATAAATGGTAAATGGAAAAA TATAATTAAATTCACACGAATGAAATAAAAATGTGTATAAATAAA Right flanking sequence: Indices 462212 -- 462711 TTTAATATCTTTCTTAAATTTTCGTACTTAACATTTTAAAACAATTTAACAAAAGAAATTATTTA TAGGTTATCAATATACTCTTTAATTATGCATTTTCAAATAAACCAAAAAAGAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAATACCATAGTAATTATATATTATAATATAATACATAAATATTATTC CATATACATTCTAATTTAAAAAAAATGTATATAAATATAAATGAATCAATATTATTATATGTATA TATATTATATAATATTTTGTTATAATTAAAATAAAAATATATGTCATTATATATATATATATATA TATATATATATATACATATATATAATACATTTATCCGATATTGTAGTCATGTATATTTTCTTTCC TAAAACATAATTTTGGCTATATAAAAAATTTTGAAAAAAACAAAATTGATATAATATATTTTCAT ACTTTTTATTTTTTATTCTTTTGTTTTTATATTTAGATGAATTTT Found at i:462687 original size:16 final size:16 Alignment explanation
Indices: 462660--462699 Score: 45 Period size: 16 Copynumber: 2.5 Consensus size: 16 462650 ATATAATATA * * * 462660 TTTTCATACTTTTTAT 1 TTTTTATTCTTTTGAT * 462676 TTTTTATTCTTTTGTT 1 TTTTTATTCTTTTGAT * 462692 TTTATATT 1 TTTTTATT 462700 TAGATGAATT Statistics Matches: 19, Mismatches: 5, Indels: 0 0.79 0.21 0.00 Matches are distributed among these distances: 16 19 1.00 ACGTcount: A:0.15, C:0.07, G:0.03, T:0.75 Consensus pattern (16 bp): TTTTTATTCTTTTGAT Left flanking sequence: Indices 462160 -- 462659 TATATATATTTTATATATATATATATATATATATATATTATGCATATAATATTTTAATATCTTTC TTAAATTTTCGTACTTAACATTTTAAAACAATTTAACAAAAGAAATTATTTATAGGTTATCAATA TACTCTTTAATTATGCATTTTCAAATAAACCAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAATACCATAGTAATTATATATTATAATATAATACATAAATATTATTCCATATACATTCTA ATTTAAAAAAAATGTATATAAATATAAATGAATCAATATTATTATATGTATATATATTATATAAT ATTTTGTTATAATTAAAATAAAAATATATGTCATTATATATATATATATATATATATATATATAT ACATATATATAATACATTTATCCGATATTGTAGTCATGTATATTTTCTTTCCTAAAACATAATTT TGGCTATATAAAAAATTTTGAAAAAAACAAAATTGATATAATATA Right flanking sequence: Indices 462700 -- 463199 TAGATGAATTTTGCTTTTAACTTTGATATTTATATAAAATTTTAAATATAAATATATATATATAT ATATATATATATAAATGGATATAATTATTTATATTATATAACATTTCATTTCTTATTTATATGTA TATAATATAATAAAACACCTCCAATTTTAGTAACACAAATTGCCTTACAACATATATATATATAT ATATTATAATAATATTTTGAAACGGTACACTTTTAAAATACACTACATAATTTGGTTATATTTAT GTAATCAATTTATATATATATATATTTATTTATTTATTTTTTTTTTTTTTTTTTTTGTAAGTTTT CATATTGTTTTCTCACTTTTGCAGCTTTAGAAAGTGAATACTTTTTTCTTTTAAATCAAAAAAAA TTCGTCCTTTTTATGTCCATCAAATATATATATATATATATATATATATATATATATATATATAT ATATATATTTATTTATTTATTTATTTATTTATTTATTGTTTTCTT Found at i:462743 original size:12 final size:12 Alignment explanation
Indices: 462727--462771 Score: 41 Period size: 12 Copynumber: 3.8 Consensus size: 12 462717 TAACTTTGAT 462727 ATTTATATAAAA 1 ATTTATATAAAA * * * 462739 TTTTAAATATAA 1 ATTTATATAAAA * * * 462751 ATATATATATAT 1 ATTTATATAAAA * 462763 ATATATATA 1 ATTTATATA 462772 TATATAAATG Statistics Matches: 26, Mismatches: 7, Indels: 0 0.79 0.21 0.00 Matches are distributed among these distances: 12 26 1.00 ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47 Consensus pattern (12 bp): ATTTATATAAAA Left flanking sequence: Indices 462227 -- 462726 AAATTTTCGTACTTAACATTTTAAAACAATTTAACAAAAGAAATTATTTATAGGTTATCAATATA CTCTTTAATTATGCATTTTCAAATAAACCAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAATACCATAGTAATTATATATTATAATATAATACATAAATATTATTCCATATACATTCTAAT TTAAAAAAAATGTATATAAATATAAATGAATCAATATTATTATATGTATATATATTATATAATAT TTTGTTATAATTAAAATAAAAATATATGTCATTATATATATATATATATATATATATATATATAC ATATATATAATACATTTATCCGATATTGTAGTCATGTATATTTTCTTTCCTAAAACATAATTTTG GCTATATAAAAAATTTTGAAAAAAACAAAATTGATATAATATATTTTCATACTTTTTATTTTTTA TTCTTTTGTTTTTATATTTAGATGAATTTTGCTTTTAACTTTGAT Right flanking sequence: Indices 462772 -- 463271 TATATAAATGGATATAATTATTTATATTATATAACATTTCATTTCTTATTTATATGTATATAATA TAATAAAACACCTCCAATTTTAGTAACACAAATTGCCTTACAACATATATATATATATATATTAT AATAATATTTTGAAACGGTACACTTTTAAAATACACTACATAATTTGGTTATATTTATGTAATCA ATTTATATATATATATATTTATTTATTTATTTTTTTTTTTTTTTTTTTTGTAAGTTTTCATATTG TTTTCTCACTTTTGCAGCTTTAGAAAGTGAATACTTTTTTCTTTTAAATCAAAAAAAATTCGTCC TTTTTATGTCCATCAAATATATATATATATATATATATATATATATATATATATATATATATATA TTTATTTATTTATTTATTTATTTATTTATTGTTTTCTTATCAAGATGAAATAAATTTAAAAACAA AATAAAAATATATGATTTCATCTTGTAGAATAACGTAACATCATT Found at i:464757 original size:25 final size:24 Alignment explanation
Indices: 464729--464787 Score: 65 Period size: 25 Copynumber: 2.4 Consensus size: 24 464719 TACATACATA * * * 464729 TATATATTTCAATATATTAATATTT 1 TATATATATAAATATAATAA-ATTT * 464754 TATATATATATATATAATAAATTT 1 TATATATATAAATATAATAAATTT * 464778 TTTATCATAT 1 TATAT-ATAT 464788 CCACTTAAAT Statistics Matches: 28, Mismatches: 5, Indels: 2 0.80 0.14 0.06 Matches are distributed among these distances: 24 8 0.29 25 20 0.71 ACGTcount: A:0.42, C:0.03, G:0.00, T:0.54 Consensus pattern (24 bp): TATATATATAAATATAATAAATTT Left flanking sequence: Indices 464229 -- 464728 TTTTAATAATAATTTTAATATTACTAATAATTATTTTATAAAAGATAATAAAGTTATCGATTATA AATATTTTGTAAATATAAATTATATGAATGAAAATCTAACAACAGTCACCCAATCCTATTCAGAA CAAATACATAAATTAAACCTAAATTGCGGTGTACAATTTTCAAAAATTTTTTATATATACAATCC TTTATCTATATGGATAAAAGATTTATGTATTTTTAATTTTATTCTTACAAACAATAATTTTAAAT TTCTTGCTTCAGATCATAATGTTATACAAAAAGCTATAACAAATATTAAATTAAAAATTAGTGAC TATCTAAATATACCTATAGACAAGTTAAATCCAAAACTTAAAATGGATCAAAAGAATTTTGATGC ATTTTATTTGTACGACAATCTAGCCCACGACGTCTACGTAATGATCAAAAAATAAAACAAAATAA AAATAATCATGCTAGTGCATACTCACACACATACATACATACATA Right flanking sequence: Indices 464788 -- 465287 CCACTTAAATAATATATTTTTTTTGGATTATTCAATTTTATAGGACAGCATTGAACAAATAAAAA ATGAAATGAAATTAGAAATGGAATTGACAAAAAACCAGAGGGATTCAAATTTTAAAGTACCCATT TCAAATACGAGCAAAAAGAAAAACCAAGACGTGACCGATTCGAAGGATTTAAATCGTAACAAATA AATTAATAAATAAATGATTTTATATATATATGTATATATATATATACCCATTTGTGGTCAGTATT TATATGTTTTTATTTTTGTGGTATGTAGCATTTTACATGGATAAAAATGAATCTTTTATTTTAGA AATATATTTTTATCAGTGCATTGACGGCCAGTGCATATTCCTAGATCCATTTATTTTGAAGTAGT TATAAACATTTATATACACGCACTCATTTAATTGATATATAATAAATGTTATTACATATTTATGG GTTTTTTTTATATCTTTCATTTTTTTCCTATTTTTCATTTATTAT Found at i:464995 original size:12 final size:12 Alignment explanation
Indices: 464974--464997 Score: 41 Period size: 12 Copynumber: 2.0 Consensus size: 12 464964 ATTTAAATCG 464974 TAACAAATAAAT 1 TAACAAATAAAT * 464986 TAATAAATAAAT 1 TAACAAATAAAT 464998 GATTTTATAT Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 12 11 1.00 ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29 Consensus pattern (12 bp): TAACAAATAAAT Left flanking sequence: Indices 464474 -- 464973 ACAATAATTTTAAATTTCTTGCTTCAGATCATAATGTTATACAAAAAGCTATAACAAATATTAAA TTAAAAATTAGTGACTATCTAAATATACCTATAGACAAGTTAAATCCAAAACTTAAAATGGATCA AAAGAATTTTGATGCATTTTATTTGTACGACAATCTAGCCCACGACGTCTACGTAATGATCAAAA AATAAAACAAAATAAAAATAATCATGCTAGTGCATACTCACACACATACATACATACATATATAT ATTTCAATATATTAATATTTTATATATATATATATAATAAATTTTTTATCATATCCACTTAAATA ATATATTTTTTTTGGATTATTCAATTTTATAGGACAGCATTGAACAAATAAAAAATGAAATGAAA TTAGAAATGGAATTGACAAAAAACCAGAGGGATTCAAATTTTAAAGTACCCATTTCAAATACGAG CAAAAAGAAAAACCAAGACGTGACCGATTCGAAGGATTTAAATCG Right flanking sequence: Indices 464998 -- 465497 GATTTTATATATATATGTATATATATATATACCCATTTGTGGTCAGTATTTATATGTTTTTATTT TTGTGGTATGTAGCATTTTACATGGATAAAAATGAATCTTTTATTTTAGAAATATATTTTTATCA GTGCATTGACGGCCAGTGCATATTCCTAGATCCATTTATTTTGAAGTAGTTATAAACATTTATAT ACACGCACTCATTTAATTGATATATAATAAATGTTATTACATATTTATGGGTTTTTTTTATATCT TTCATTTTTTTCCTATTTTTCATTTATTATTGTTATATTTAAATTTTTTTTTCACTTGTTTCTTT AGTTTACTGTTTTATGAATACGATCAGGATATGAACAGGCTCCCCAAGTTTTTATGCAATAAAGA AATAACCCATATTGAATCATTCGAACTAGATGAGAAAATAAGAAAAAGGTAATTCGAGAATTTTA TATTAATAAATAGGAAGGAATAAAAGAAAAATGAAATGTGTATAT Found at i:465267 original size:18 final size:18 Alignment explanation
Indices: 465244--465282 Score: 57 Period size: 18 Copynumber: 2.2 Consensus size: 18 465234 TATTTATGGG * 465244 TTTTTTTTATATCTTTCA 1 TTTTTTTCATATCTTTCA * * 465262 TTTTTTTCCTATTTTTCA 1 TTTTTTTCATATCTTTCA 465280 TTT 1 TTT 465283 ATTATTGTTA Statistics Matches: 18, Mismatches: 3, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 18 18 1.00 ACGTcount: A:0.13, C:0.13, G:0.00, T:0.74 Consensus pattern (18 bp): TTTTTTTCATATCTTTCA Left flanking sequence: Indices 464744 -- 465243 ATTAATATTTTATATATATATATATAATAAATTTTTTATCATATCCACTTAAATAATATATTTTT TTTGGATTATTCAATTTTATAGGACAGCATTGAACAAATAAAAAATGAAATGAAATTAGAAATGG AATTGACAAAAAACCAGAGGGATTCAAATTTTAAAGTACCCATTTCAAATACGAGCAAAAAGAAA AACCAAGACGTGACCGATTCGAAGGATTTAAATCGTAACAAATAAATTAATAAATAAATGATTTT ATATATATATGTATATATATATATACCCATTTGTGGTCAGTATTTATATGTTTTTATTTTTGTGG TATGTAGCATTTTACATGGATAAAAATGAATCTTTTATTTTAGAAATATATTTTTATCAGTGCAT TGACGGCCAGTGCATATTCCTAGATCCATTTATTTTGAAGTAGTTATAAACATTTATATACACGC ACTCATTTAATTGATATATAATAAATGTTATTACATATTTATGGG Right flanking sequence: Indices 465283 -- 465782 ATTATTGTTATATTTAAATTTTTTTTTCACTTGTTTCTTTAGTTTACTGTTTTATGAATACGATC AGGATATGAACAGGCTCCCCAAGTTTTTATGCAATAAAGAAATAACCCATATTGAATCATTCGAA CTAGATGAGAAAATAAGAAAAAGGTAATTCGAGAATTTTATATTAATAAATAGGAAGGAATAAAA GAAAAATGAAATGTGTATATAAATGAATATTTATATGAATAAATATATATATGTATATATTATTA TTATTATTATTATTTTTTTTTTTTTTTTTTTTTTTTTTTTATAGATATGCAATATTATCGCACTT GCCTCTTGGTGTTAATGTCTTATTTGTTTCCATCAATATAGGTTAAATCTATTAATAACTGAAAT TATATAAAAGATAAAATTTTACATATATATATATATATATATATGTTTATATATATATTTTATTT AGATGATTTGTTGTCCAATAGAACAAAGGAACATTTTTCAGTAAG Found at i:465522 original size:16 final size:16 Alignment explanation
Indices: 465493--465534 Score: 56 Period size: 16 Copynumber: 2.6 Consensus size: 16 465483 ATGAAATGTG * * * 465493 TATATAAATGAATATT 1 TATATGAATAAATATA 465509 TATATGAATAAATATA 1 TATATGAATAAATATA * 465525 TATATGTATA 1 TATATGAATA 465535 TATTATTATT Statistics Matches: 22, Mismatches: 4, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 16 22 1.00 ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43 Consensus pattern (16 bp): TATATGAATAAATATA Left flanking sequence: Indices 464993 -- 465492 TAAATGATTTTATATATATATGTATATATATATATACCCATTTGTGGTCAGTATTTATATGTTTT TATTTTTGTGGTATGTAGCATTTTACATGGATAAAAATGAATCTTTTATTTTAGAAATATATTTT TATCAGTGCATTGACGGCCAGTGCATATTCCTAGATCCATTTATTTTGAAGTAGTTATAAACATT TATATACACGCACTCATTTAATTGATATATAATAAATGTTATTACATATTTATGGGTTTTTTTTA TATCTTTCATTTTTTTCCTATTTTTCATTTATTATTGTTATATTTAAATTTTTTTTTCACTTGTT TCTTTAGTTTACTGTTTTATGAATACGATCAGGATATGAACAGGCTCCCCAAGTTTTTATGCAAT AAAGAAATAACCCATATTGAATCATTCGAACTAGATGAGAAAATAAGAAAAAGGTAATTCGAGAA TTTTATATTAATAAATAGGAAGGAATAAAAGAAAAATGAAATGTG Right flanking sequence: Indices 465535 -- 466034 TATTATTATTATTATTATTATTTTTTTTTTTTTTTTTTTTTTTTTTTTATAGATATGCAATATTA TCGCACTTGCCTCTTGGTGTTAATGTCTTATTTGTTTCCATCAATATAGGTTAAATCTATTAATA ACTGAAATTATATAAAAGATAAAATTTTACATATATATATATATATATATATGTTTATATATATA TTTTATTTAGATGATTTGTTGTCCAATAGAACAAAGGAACATTTTTCAGTAAGTTTAATTAAATA TTTCTTTTTATTTTTATTTTTATTTTTATTTTTTTTTTTGTTCTTTAATATCTTGTTTATATGTT TTATATAACCATTTATATTTTGTAGAAAGAAATAGCTGTACAAAAAAATAAACATCACAATATTA TGAAAAGAAAAATGAAGGAAGAAAAGTACTTGAAACTTTTAGCAGTAAGAAAAATAAAGATGAAA TAATATTGCATTTATATGTATATTTTTTAAATTAAAATAATGTAT Found at i:465535 original size:12 final size:12 Alignment explanation
Indices: 465493--465537 Score: 48 Period size: 12 Copynumber: 3.8 Consensus size: 12 465483 ATGAAATGTG * 465493 TATATAAATGAA 1 TATATATATGAA * 465505 TATTTATATGAA 1 TATATATATGAA * ** 465517 TAAATATATATA 1 TATATATATGAA * 465529 TGTATATAT 1 TATATATAT 465538 TATTATTATT Statistics Matches: 25, Mismatches: 8, Indels: 0 0.76 0.24 0.00 Matches are distributed among these distances: 12 25 1.00 ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44 Consensus pattern (12 bp): TATATATATGAA Left flanking sequence: Indices 464993 -- 465492 TAAATGATTTTATATATATATGTATATATATATATACCCATTTGTGGTCAGTATTTATATGTTTT TATTTTTGTGGTATGTAGCATTTTACATGGATAAAAATGAATCTTTTATTTTAGAAATATATTTT TATCAGTGCATTGACGGCCAGTGCATATTCCTAGATCCATTTATTTTGAAGTAGTTATAAACATT TATATACACGCACTCATTTAATTGATATATAATAAATGTTATTACATATTTATGGGTTTTTTTTA TATCTTTCATTTTTTTCCTATTTTTCATTTATTATTGTTATATTTAAATTTTTTTTTCACTTGTT TCTTTAGTTTACTGTTTTATGAATACGATCAGGATATGAACAGGCTCCCCAAGTTTTTATGCAAT AAAGAAATAACCCATATTGAATCATTCGAACTAGATGAGAAAATAAGAAAAAGGTAATTCGAGAA TTTTATATTAATAAATAGGAAGGAATAAAAGAAAAATGAAATGTG Right flanking sequence: Indices 465538 -- 466037 TATTATTATTATTATTATTTTTTTTTTTTTTTTTTTTTTTTTTTTATAGATATGCAATATTATCG CACTTGCCTCTTGGTGTTAATGTCTTATTTGTTTCCATCAATATAGGTTAAATCTATTAATAACT GAAATTATATAAAAGATAAAATTTTACATATATATATATATATATATATGTTTATATATATATTT TATTTAGATGATTTGTTGTCCAATAGAACAAAGGAACATTTTTCAGTAAGTTTAATTAAATATTT CTTTTTATTTTTATTTTTATTTTTATTTTTTTTTTTGTTCTTTAATATCTTGTTTATATGTTTTA TATAACCATTTATATTTTGTAGAAAGAAATAGCTGTACAAAAAAATAAACATCACAATATTATGA AAAGAAAAATGAAGGAAGAAAAGTACTTGAAACTTTTAGCAGTAAGAAAAATAAAGATGAAATAA TATTGCATTTATATGTATATTTTTTAAATTAAAATAATGTATAAA Found at