TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: 97739976 P. falciparum 3D7 GENOMIC pfal_chr4 Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 1204112 ACGTcount: A:0.39, C:0.11, G:0.10, T:0.40 Found at i: i:151475 original size:21 final size:20 Alignment explanation
Indices: 151451--151494 Score: 56 Period size: 21 Copynumber: 2.1 Consensus size: 20 151441 CAAAAAGAGG 151451 ATATACAAA-AAATTAATAACT 1 ATATACAAACAAATT-ATAA-T * 151472 ATATTCAAACAAATTATAAT 1 ATATACAAACAAATTATAAT 151492 ATA 1 ATA 151495 ATAAATGAAG Statistics Matches: 21, Mismatches: 1, Indels: 3 0.84 0.04 0.12 Matches are distributed among these distances: 20 4 0.19 21 12 0.57 22 5 0.24 ACGTcount: A:0.59, C:0.09, G:0.00, T:0.32 Consensus pattern (20 bp): ATATACAAACAAATTATAAT Left flanking sequence: Indices 150951 -- 151450 ACAAAAAAATATTTTAAGAAATATAGACAATATATTAAATAAAAAAGAAAATATTATAGATAAAG TTATAAAATGTAATTGTGATGATTATAAAGATATCTTAATACAAAACGAAACGGAATATCAAAAA TTACAAAATATAAATCATACATATGAAGAAAAAAAAAAATCAATAGATATATTAAAAATTAAAAA TATAAAACAAAAAAATATTCAAGAATATAAAAACAAATTAGAACAAATGAATACAATAATTAATC AAAGTATAGAACAACATGTATTCATAAACGCTGATATTTTACAAAATGAAAAAATAAAATTAGAA GAAATCATAAAAAATCTAGATATACTAGATGAACAAATTATGACATATCATAATTCAATAGATGA ATTATATAAACTAGGAATACAATGTGACAATCATCTAATTACAACTATTAGTGTTGTTGTTAATA AAAATACAACAAAAATTATGATACATATAAAAAAACAAAAAGAGG Right flanking sequence: Indices 151495 -- 151994 ATAAATGAAGAAGCTCTACAATTTCACAGGCTCTATGGACACAATCTTATAAGTGAAGATGACAA AAATAATTTGGTACATATTATAAAAGAACAAAAGAATATATATACACAAAAGGAAATAGATATTT CTAAAATAATTAAACATGTTAAAAAAGGATTATATTCATTGAATGAACATGATATGAATCATGAT ACACATATGAATATAATAAATGAACATATAAATAATAATATTTTACAACCATACACACAATTAAT AAACATGATAAAAGATATTGATAATGTTTTTATAAAAATACAAAATAATAAATTCGAACAAATAC AAAAATATATAGAAATTATTAAATCTTTAGAACAATTAAATAAAAATATAAACACAGATAATTTA AATAAATTAAAAGATACACAAAACAAATTAATAAATATAGAAACAGAAATGAAACATAAACAAAA ACAATTAATAAACAAAATGAATGATATAGAAAAGGATAATATTAC Found at i:151689 original size:12 final size:11 Alignment explanation
Indices: 151667--151690 Score: 39 Period size: 12 Copynumber: 2.1 Consensus size: 11 151657 TATTCATTGA 151667 ATGAACATGAT 1 ATGAACATGAT 151678 ATGAATCATGAT 1 ATGAA-CATGAT 151690 A 1 A 151691 CACATATGAA Statistics Matches: 12, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 11 5 0.42 12 7 0.58 ACGTcount: A:0.46, C:0.08, G:0.17, T:0.29 Consensus pattern (11 bp): ATGAACATGAT Left flanking sequence: Indices 151167 -- 151666 AGAATATAAAAACAAATTAGAACAAATGAATACAATAATTAATCAAAGTATAGAACAACATGTAT TCATAAACGCTGATATTTTACAAAATGAAAAAATAAAATTAGAAGAAATCATAAAAAATCTAGAT ATACTAGATGAACAAATTATGACATATCATAATTCAATAGATGAATTATATAAACTAGGAATACA ATGTGACAATCATCTAATTACAACTATTAGTGTTGTTGTTAATAAAAATACAACAAAAATTATGA TACATATAAAAAAACAAAAAGAGGATATACAAAAAATTAATAACTATATTCAAACAAATTATAAT ATAATAAATGAAGAAGCTCTACAATTTCACAGGCTCTATGGACACAATCTTATAAGTGAAGATGA CAAAAATAATTTGGTACATATTATAAAAGAACAAAAGAATATATATACACAAAAGGAAATAGATA TTTCTAAAATAATTAAACATGTTAAAAAAGGATTATATTCATTGA Right flanking sequence: Indices 151691 -- 152190 CACATATGAATATAATAAATGAACATATAAATAATAATATTTTACAACCATACACACAATTAATA AACATGATAAAAGATATTGATAATGTTTTTATAAAAATACAAAATAATAAATTCGAACAAATACA AAAATATATAGAAATTATTAAATCTTTAGAACAATTAAATAAAAATATAAACACAGATAATTTAA ATAAATTAAAAGATACACAAAACAAATTAATAAATATAGAAACAGAAATGAAACATAAACAAAAA CAATTAATAAACAAAATGAATGATATAGAAAAGGATAATATTACAGATCAATATATGCATGATGT TCAGCAAAATATATTTGAACCTATAACATTAAAAATGAATGAATATAATACATTATTAAATGATA ATCATAATAATAATATAAATAATGAACATCAATTTAATCATTTAAATAGTCTTCATACAAAAATA TTTAGTCATAATTATAATAAAGAACAACAACAAGAATATATAACC Found at i:151722 original size:12 final size:13 Alignment explanation
Indices: 151696--151722 Score: 40 Period size: 13 Copynumber: 2.2 Consensus size: 13 151686 TGATACACAT * 151696 ATGAATATAATAA 1 ATGAACATAATAA 151709 ATGAACAT-ATAA 1 ATGAACATAATAA 151721 AT 1 AT 151723 AATAATATTT Statistics Matches: 13, Mismatches: 1, Indels: 1 0.87 0.07 0.07 Matches are distributed among these distances: 12 6 0.46 13 7 0.54 ACGTcount: A:0.59, C:0.04, G:0.07, T:0.30 Consensus pattern (13 bp): ATGAACATAATAA Left flanking sequence: Indices 151196 -- 151695 ATACAATAATTAATCAAAGTATAGAACAACATGTATTCATAAACGCTGATATTTTACAAAATGAA AAAATAAAATTAGAAGAAATCATAAAAAATCTAGATATACTAGATGAACAAATTATGACATATCA TAATTCAATAGATGAATTATATAAACTAGGAATACAATGTGACAATCATCTAATTACAACTATTA GTGTTGTTGTTAATAAAAATACAACAAAAATTATGATACATATAAAAAAACAAAAAGAGGATATA CAAAAAATTAATAACTATATTCAAACAAATTATAATATAATAAATGAAGAAGCTCTACAATTTCA CAGGCTCTATGGACACAATCTTATAAGTGAAGATGACAAAAATAATTTGGTACATATTATAAAAG AACAAAAGAATATATATACACAAAAGGAAATAGATATTTCTAAAATAATTAAACATGTTAAAAAA GGATTATATTCATTGAATGAACATGATATGAATCATGATACACAT Right flanking sequence: Indices 151723 -- 152222 AATAATATTTTACAACCATACACACAATTAATAAACATGATAAAAGATATTGATAATGTTTTTAT AAAAATACAAAATAATAAATTCGAACAAATACAAAAATATATAGAAATTATTAAATCTTTAGAAC AATTAAATAAAAATATAAACACAGATAATTTAAATAAATTAAAAGATACACAAAACAAATTAATA AATATAGAAACAGAAATGAAACATAAACAAAAACAATTAATAAACAAAATGAATGATATAGAAAA GGATAATATTACAGATCAATATATGCATGATGTTCAGCAAAATATATTTGAACCTATAACATTAA AAATGAATGAATATAATACATTATTAAATGATAATCATAATAATAATATAAATAATGAACATCAA TTTAATCATTTAAATAGTCTTCATACAAAAATATTTAGTCATAATTATAATAAAGAACAACAACA AGAATATATAACCAACATCATGCAAAGAATTGATGTATTCATAAA Found at i:152332 original size:27 final size:27 Alignment explanation
Indices: 152279--152332 Score: 66 Period size: 27 Copynumber: 2.0 Consensus size: 27 152269 CAAGAATATA * * 152279 AACAAATAGACAAAAATAAAATAAATC 1 AACAAATAAACAAAAATAAAAAAAATC * * * * 152306 AACATATAAACAATATTAAAAATAATC 1 AACAAATAAACAAAAATAAAAAAAATC 152333 TAATTCATGT Statistics Matches: 21, Mismatches: 6, Indels: 0 0.78 0.22 0.00 Matches are distributed among these distances: 27 21 1.00 ACGTcount: A:0.67, C:0.11, G:0.02, T:0.20 Consensus pattern (27 bp): AACAAATAAACAAAAATAAAAAAAATC Left flanking sequence: Indices 151779 -- 152278 TGTTTTTATAAAAATACAAAATAATAAATTCGAACAAATACAAAAATATATAGAAATTATTAAAT CTTTAGAACAATTAAATAAAAATATAAACACAGATAATTTAAATAAATTAAAAGATACACAAAAC AAATTAATAAATATAGAAACAGAAATGAAACATAAACAAAAACAATTAATAAACAAAATGAATGA TATAGAAAAGGATAATATTACAGATCAATATATGCATGATGTTCAGCAAAATATATTTGAACCTA TAACATTAAAAATGAATGAATATAATACATTATTAAATGATAATCATAATAATAATATAAATAAT GAACATCAATTTAATCATTTAAATAGTCTTCATACAAAAATATTTAGTCATAATTATAATAAAGA ACAACAACAAGAATATATAACCAACATCATGCAAAGAATTGATGTATTCATAAATGATTTAGATA CTTACCAATATGAATATTATTTTTATGAATGGAATCAAGAATATA Right flanking sequence: Indices 152333 -- 152832 TAATTCATGTTAAGAAACAATTTGAACACACCTTAGAAAATATAAAAAATAATGAAAATATTTTC GACAACATACAATTGAAAAAAAAAGATATTGACGATATTATTATAAACATTAATAATACAAAAGA AACATATCTAAAAGAATTGAACAAAAAAAAAAATGTTACAAAATAAAAAAAAAGTTGATGAAAAA TCAGAAATAAATAATCATCACACATTACAACATGATAATCAAAATGTTGAACAAAAAAATAAAAT TAAAGATCATAATTTAATAACCAAGCCAAATAACAATTCATCAGAAGAATCTCATCAAAATGAAC AAATGAAAGAACAAAACAAAAATATACTTGAAAAACAAACAAGAAATATCAAACCACATCATGTT CATAATCATAATCATAATCATAATCAAAATCAAAAAGATTCAACAAAATTACAGGAACAAGATAT ATCTACACACAAATTACATAATACTATACATGAGCAACAAAGTAA Found at i:153733 original size:13 final size:13 Alignment explanation
Indices: 153711--153740 Score: 53 Period size: 13 Copynumber: 2.3 Consensus size: 13 153701 ATCTTTTAAA * 153711 AAATATATAACAT 1 AAATACATAACAT 153724 AAATACATAACAT 1 AAATACATAACAT 153737 AAAT 1 AAAT 153741 GAATATTGTG Statistics Matches: 16, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 13 16 1.00 ACGTcount: A:0.63, C:0.10, G:0.00, T:0.27 Consensus pattern (13 bp): AAATACATAACAT Left flanking sequence: Indices 153211 -- 153710 TATATTTTTTTTTTTTTTTTATAATATAAATTCTTATGTTTTATAATTTTATTAACAATTATTAA ACTTGAAATATAAAAATAAATCATAGCAAGAAAATAAAAAAAAAAAAAAAAATTGAATATTTTGT ATATATTGAAGAGGATTTATATTCATATATTTTTTTGATATATATATGAAGCATAAAAGAATAAA TAATTAGTCCCCATTTTTTTTTTTTTTTTTTTTAACAACATATAAAAATTAATACATACATATAT ATATATATATATTTATTTATTTCTTTATATACCTTCTGAATGTTTTATTTTTATATTACAATTTT TATTTAAAGTCTAACTTTGTTTATTCAAAATCGGATAATTCATAAAATTCAATATTTTAATCATC AAAATAAAAATTAAAAATAAATATCGGAAAATTTTATTATTTTACAACTATTTCTTTTTTTTTTT TTTTTTTTTTTTAACATTATAATGAAAAGATAAATATCTTTTAAA Right flanking sequence: Indices 153741 -- 154240 GAATATTGTGTATATATTTTATTAATATATAAAATATATACATATATATATATATATATATATAT ATATATATATATATATATATATATATATATATATATTTATTTATATATATATTTATTTATATATA TTTATTTATTTATATATACATTTATTTATATATACATTTATCTATATATACATTTATCCATATAC ATTCCATTTTTGTGCTATTCTACTACAGAATCTGCTGTGTTAAAAATCCAAACAATAATATATTT AATTAAACGATAAATAGTAATTAAAATGAATTTAATTATTTTACATACTAATCTAATAGAACGTT TTGCATATTTAACAAAACTTCTTAAATTTCTTTTTGTAGATGTATGATATTTAAATTTATATTCT ATACTTTTTGGTTTTATATAATCAATATTATTTATATACTCGTTCCATAATTTTTTTTGATTTTC ATCATCATTTGTATTTATATATGATTTAAGTTCATCCAATTTATC Found at i:153789 original size:34 final size:33 Alignment explanation
Indices: 153751--153925 Score: 190 Period size: 34 Copynumber: 5.3 Consensus size: 33 153741 GAATATTGTG * * * 153751 TATATATTTTATTAATATATA-AAATATATACA 1 TATATATTTTATTTATATATATATATATATATA * * 153783 TATATA-TATATATATATATATATATATATATA 1 TATATATTTTATTTATATATATATATATATATA * * * * 153815 TATATATATATATATATATATATATATTTATTTA 1 TATATAT-TTTATTTATATATATATATATATATA * * * 153849 TATATATATTTATTTATATATATTTATTTATTTA 1 TATATAT-TTTATTTATATATATATATATATATA * * * * 153883 TATATACATTTATTTATATATACATTTATCTATA 1 TATATA-TTTTATTTATATATATATATATATATA * 153917 TATACATTT 1 TATATATTT 153926 ATCCATATAC Statistics Matches: 120, Mismatches: 19, Indels: 7 0.82 0.13 0.05 Matches are distributed among these distances: 31 11 0.09 32 21 0.17 33 2 0.02 34 86 0.72 ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54 Consensus pattern (33 bp): TATATATTTTATTTATATATATATATATATATA Left flanking sequence: Indices 153251 -- 153750 TTATAATTTTATTAACAATTATTAAACTTGAAATATAAAAATAAATCATAGCAAGAAAATAAAAA AAAAAAAAAAAATTGAATATTTTGTATATATTGAAGAGGATTTATATTCATATATTTTTTTGATA TATATATGAAGCATAAAAGAATAAATAATTAGTCCCCATTTTTTTTTTTTTTTTTTTTAACAACA TATAAAAATTAATACATACATATATATATATATATATTTATTTATTTCTTTATATACCTTCTGAA TGTTTTATTTTTATATTACAATTTTTATTTAAAGTCTAACTTTGTTTATTCAAAATCGGATAATT CATAAAATTCAATATTTTAATCATCAAAATAAAAATTAAAAATAAATATCGGAAAATTTTATTAT TTTACAACTATTTCTTTTTTTTTTTTTTTTTTTTTTTAACATTATAATGAAAAGATAAATATCTT TTAAAAAATATATAACATAAATACATAACATAAATGAATATTGTG Right flanking sequence: Indices 153926 -- 154425 ATCCATATACATTCCATTTTTGTGCTATTCTACTACAGAATCTGCTGTGTTAAAAATCCAAACAA TAATATATTTAATTAAACGATAAATAGTAATTAAAATGAATTTAATTATTTTACATACTAATCTA ATAGAACGTTTTGCATATTTAACAAAACTTCTTAAATTTCTTTTTGTAGATGTATGATATTTAAA TTTATATTCTATACTTTTTGGTTTTATATAATCAATATTATTTATATACTCGTTCCATAATTTTT TTTGATTTTCATCATCATTTGTATTTATATATGATTTAAGTTCATCCAATTTATCATTATTTCTA TTCTTTTCATTTATATTATCGTCAGGAAAAGTTACCTCCACATTATTTTCTCCATTAAAATCAAC AATACTTATGTTATCCCCTATAGAATCATTTCCTAATTTTACATTTTCTGATATATGATCCCTCA CATTATATTCATAATTATCAACATATTTTTCAAAAGATTCTTCTA Found at i:153934 original size:16 final size:16 Alignment explanation
Indices: 153751--153927 Score: 204 Period size: 16 Copynumber: 10.8 Consensus size: 16 153741 GAATATTGTG 153751 TATATAT-TTTATTAATA 1 TATATATATTTATT--TA * * ** 153768 TATAAAATATATACATA 1 TAT-ATATATTTATTTA * * 153785 TATATATATATATATA 1 TATATATATTTATTTA * * 153801 TATATATATATATATA 1 TATATATATTTATTTA * * 153817 TATATATATATATATA 1 TATATATATTTATTTA 153833 TATATATATTTATTTA 1 TATATATATTTATTTA 153849 TATATATATTTATTTA 1 TATATATATTTATTTA 153865 TATATATTTATTTATTTA 1 TATATA--TATTTATTTA * 153883 TATATACATTTATTTA 1 TATATATATTTATTTA * * 153899 TATATACATTTATCTA 1 TATATATATTTATTTA * 153915 TATATACATTTAT 1 TATATATATTTAT 153928 CCATATACAT Statistics Matches: 146, Mismatches: 10, Indels: 9 0.88 0.06 0.05 Matches are distributed among these distances: 16 116 0.79 17 8 0.05 18 19 0.13 19 3 0.02 ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54 Consensus pattern (16 bp): TATATATATTTATTTA Left flanking sequence: Indices 153251 -- 153750 TTATAATTTTATTAACAATTATTAAACTTGAAATATAAAAATAAATCATAGCAAGAAAATAAAAA AAAAAAAAAAAATTGAATATTTTGTATATATTGAAGAGGATTTATATTCATATATTTTTTTGATA TATATATGAAGCATAAAAGAATAAATAATTAGTCCCCATTTTTTTTTTTTTTTTTTTTAACAACA TATAAAAATTAATACATACATATATATATATATATATTTATTTATTTCTTTATATACCTTCTGAA TGTTTTATTTTTATATTACAATTTTTATTTAAAGTCTAACTTTGTTTATTCAAAATCGGATAATT CATAAAATTCAATATTTTAATCATCAAAATAAAAATTAAAAATAAATATCGGAAAATTTTATTAT TTTACAACTATTTCTTTTTTTTTTTTTTTTTTTTTTTAACATTATAATGAAAAGATAAATATCTT TTAAAAAATATATAACATAAATACATAACATAAATGAATATTGTG Right flanking sequence: Indices 153928 -- 154427 CCATATACATTCCATTTTTGTGCTATTCTACTACAGAATCTGCTGTGTTAAAAATCCAAACAATA ATATATTTAATTAAACGATAAATAGTAATTAAAATGAATTTAATTATTTTACATACTAATCTAAT AGAACGTTTTGCATATTTAACAAAACTTCTTAAATTTCTTTTTGTAGATGTATGATATTTAAATT TATATTCTATACTTTTTGGTTTTATATAATCAATATTATTTATATACTCGTTCCATAATTTTTTT TGATTTTCATCATCATTTGTATTTATATATGATTTAAGTTCATCCAATTTATCATTATTTCTATT CTTTTCATTTATATTATCGTCAGGAAAAGTTACCTCCACATTATTTTCTCCATTAAAATCAACAA TACTTATGTTATCCCCTATAGAATCATTTCCTAATTTTACATTTTCTGATATATGATCCCTCACA TTATATTCATAATTATCAACATATTTTTCAAAAGATTCTTCTAAA Found at i:153938 original size:14 final size:15 Alignment explanation
Indices: 153884--153938 Score: 64 Period size: 16 Copynumber: 3.6 Consensus size: 15 153874 ATTTATTTAT * * 153884 ATATACATTTATTTAT 1 ATATACATTTA-TCAC * 153900 ATATACATTTATCTAT 1 ATATACATTTATC-AC 153916 ATATACATTTATC-C 1 ATATACATTTATCAC 153930 ATATACATT 1 ATATACATT 153939 CCATTTTTGT Statistics Matches: 36, Mismatches: 2, Indels: 4 0.86 0.05 0.10 Matches are distributed among these distances: 14 9 0.25 15 1 0.03 16 26 0.72 ACGTcount: A:0.38, C:0.13, G:0.00, T:0.49 Consensus pattern (15 bp): ATATACATTTATCAC Left flanking sequence: Indices 153384 -- 153883 ATATGAAGCATAAAAGAATAAATAATTAGTCCCCATTTTTTTTTTTTTTTTTTTTAACAACATAT AAAAATTAATACATACATATATATATATATATATTTATTTATTTCTTTATATACCTTCTGAATGT TTTATTTTTATATTACAATTTTTATTTAAAGTCTAACTTTGTTTATTCAAAATCGGATAATTCAT AAAATTCAATATTTTAATCATCAAAATAAAAATTAAAAATAAATATCGGAAAATTTTATTATTTT ACAACTATTTCTTTTTTTTTTTTTTTTTTTTTTTAACATTATAATGAAAAGATAAATATCTTTTA AAAAATATATAACATAAATACATAACATAAATGAATATTGTGTATATATTTTATTAATATATAAA ATATATACATATATATATATATATATATATATATATATATATATATATATATATATATATATATA TATTTATTTATATATATATTTATTTATATATATTTATTTATTTAT Right flanking sequence: Indices 153939 -- 154438 CCATTTTTGTGCTATTCTACTACAGAATCTGCTGTGTTAAAAATCCAAACAATAATATATTTAAT TAAACGATAAATAGTAATTAAAATGAATTTAATTATTTTACATACTAATCTAATAGAACGTTTTG CATATTTAACAAAACTTCTTAAATTTCTTTTTGTAGATGTATGATATTTAAATTTATATTCTATA CTTTTTGGTTTTATATAATCAATATTATTTATATACTCGTTCCATAATTTTTTTTGATTTTCATC ATCATTTGTATTTATATATGATTTAAGTTCATCCAATTTATCATTATTTCTATTCTTTTCATTTA TATTATCGTCAGGAAAAGTTACCTCCACATTATTTTCTCCATTAAAATCAACAATACTTATGTTA TCCCCTATAGAATCATTTCCTAATTTTACATTTTCTGATATATGATCCCTCACATTATATTCATA ATTATCAACATATTTTTCAAAAGATTCTTCTAAATTCTTATTATT Found at i:154405 original size:12 final size:12 Alignment explanation
Indices: 154390--154413 Score: 34 Period size: 12 Copynumber: 2.0 Consensus size: 12 154380 ACATTATATT 154390 CATAATTATCAA 1 CATAATTATCAA * * 154402 CATATTTTTCAA 1 CATAATTATCAA 154414 AAGATTCTTC Statistics Matches: 10, Mismatches: 2, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 12 10 1.00 ACGTcount: A:0.42, C:0.17, G:0.00, T:0.42 Consensus pattern (12 bp): CATAATTATCAA Left flanking sequence: Indices 153890 -- 154389 ATTTATTTATATATACATTTATCTATATATACATTTATCCATATACATTCCATTTTTGTGCTATT CTACTACAGAATCTGCTGTGTTAAAAATCCAAACAATAATATATTTAATTAAACGATAAATAGTA ATTAAAATGAATTTAATTATTTTACATACTAATCTAATAGAACGTTTTGCATATTTAACAAAACT TCTTAAATTTCTTTTTGTAGATGTATGATATTTAAATTTATATTCTATACTTTTTGGTTTTATAT AATCAATATTATTTATATACTCGTTCCATAATTTTTTTTGATTTTCATCATCATTTGTATTTATA TATGATTTAAGTTCATCCAATTTATCATTATTTCTATTCTTTTCATTTATATTATCGTCAGGAAA AGTTACCTCCACATTATTTTCTCCATTAAAATCAACAATACTTATGTTATCCCCTATAGAATCAT TTCCTAATTTTACATTTTCTGATATATGATCCCTCACATTATATT Right flanking sequence: Indices 154414 -- 154913 AAGATTCTTCTAAATTCTTATTATTATATCTTGAAGGATATTCTTCATTCTTATCATCATCATAA TTAATAATTCTTACTTTCGGCTCATCATAATAATAACTATTTGAAAATTCAACTAATATCCTATA TTCCTTCAATCTTTGGGACCTCTTAAAATCTAATTTACCATTCAAATTTTTATCTCCTCCATACT AAAAAAAAAATAAAAATAAAAATAAAAATAAAAAAATAAACCACATATATAAATATAATATATAT ATAATATATATAATATATATAATATATATAATATATATTTTATGTTATTTTTATTTTACTTCATT ATATTTATTCTCTGTCCATATGAACAAATATATTATAAAAAGTTGCACATAAAAATAAAAACTAA AACAAAAACGTAATTTATCCTTCCTTATATATATCATTATATATATATATATATATAAATATATA TTTTTTTTTGTTTTTTTTTTTTATTATTCCTAATTATATGAATTC Found at i:154711 original size:11 final size:11 Alignment explanation
Indices: 154655--154710 Score: 66 Period size: 11 Copynumber: 5.0 Consensus size: 11 154645 TAAACCACAT * 154655 ATATAAATATA 1 ATATATATATA 154666 ATATATATATA 1 ATATATATATA ** 154677 ATATATATAAT 1 ATATATATATA 154688 ATATATA-ATA 1 ATATATATATA 154698 TATATAATATATA 1 -ATAT-ATATATA 154711 TTTTATGTTA Statistics Matches: 37, Mismatches: 5, Indels: 4 0.80 0.11 0.09 Matches are distributed among these distances: 10 1 0.03 11 30 0.81 12 3 0.08 13 3 0.08 ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43 Consensus pattern (11 bp): ATATATATATA Left flanking sequence: Indices 154155 -- 154654 ATATTATTTATATACTCGTTCCATAATTTTTTTTGATTTTCATCATCATTTGTATTTATATATGA TTTAAGTTCATCCAATTTATCATTATTTCTATTCTTTTCATTTATATTATCGTCAGGAAAAGTTA CCTCCACATTATTTTCTCCATTAAAATCAACAATACTTATGTTATCCCCTATAGAATCATTTCCT AATTTTACATTTTCTGATATATGATCCCTCACATTATATTCATAATTATCAACATATTTTTCAAA AGATTCTTCTAAATTCTTATTATTATATCTTGAAGGATATTCTTCATTCTTATCATCATCATAAT TAATAATTCTTACTTTCGGCTCATCATAATAATAACTATTTGAAAATTCAACTAATATCCTATAT TCCTTCAATCTTTGGGACCTCTTAAAATCTAATTTACCATTCAAATTTTTATCTCCTCCATACTA AAAAAAAAATAAAAATAAAAATAAAAATAAAAAAATAAACCACAT Right flanking sequence: Indices 154711 -- 155210 TTTTATGTTATTTTTATTTTACTTCATTATATTTATTCTCTGTCCATATGAACAAATATATTATA AAAAGTTGCACATAAAAATAAAAACTAAAACAAAAACGTAATTTATCCTTCCTTATATATATCAT TATATATATATATATATATAAATATATATTTTTTTTTGTTTTTTTTTTTTATTATTCCTAATTAT ATGAATTCACTTATTTTTTTCATTATATACAATATGATAAAATATAAATAAAAAATTGATTTCTT TAAAAAGGTATTTTAATAATTACATAAAATAATATATATATATATATATTAATATATTTTTTTAT CTTTTTTTTTTTCTTTTTTCTTTTTTTTTTTTTTTTTCTTTCTTTTTTTTTTTTTTTCTTTTTTT TTTCTATATTTAAAATATATCAAACAACCCAAAACTAATAACTTTCAAAAAAAAATTCAAAAAAT ATAGAAAATTATAAAAAATGCATTTTTCCGAAATAATTATAATAA Found at i:155057 original size:19 final size:18 Alignment explanation
Indices: 155027--155103 Score: 120 Period size: 19 Copynumber: 4.1 Consensus size: 18 155017 TATTAATATA * 155027 TTTTTTTATCTTTTTTTT 1 TTTTTTTTTCTTTTTTTT 155045 TTTCTTTTTTCTTTTTTTT 1 TTT-TTTTTTCTTTTTTTT 155064 TTTTTTTTTCTTTCTTTTTT 1 TTTTTTTTTC-TT-TTTTTT 155084 TTTTTTTTTCTTTTTTTT 1 TTTTTTTTTCTTTTTTTT 155102 TT 1 TT 155104 CTATATTTAA Statistics Matches: 55, Mismatches: 1, Indels: 6 0.89 0.02 0.10 Matches are distributed among these distances: 18 18 0.33 19 21 0.38 20 16 0.29 ACGTcount: A:0.01, C:0.08, G:0.00, T:0.91 Consensus pattern (18 bp): TTTTTTTTTCTTTTTTTT Left flanking sequence: Indices 154527 -- 155026 TCAACTAATATCCTATATTCCTTCAATCTTTGGGACCTCTTAAAATCTAATTTACCATTCAAATT TTTATCTCCTCCATACTAAAAAAAAAATAAAAATAAAAATAAAAATAAAAAAATAAACCACATAT ATAAATATAATATATATATAATATATATAATATATATAATATATATAATATATATTTTATGTTAT TTTTATTTTACTTCATTATATTTATTCTCTGTCCATATGAACAAATATATTATAAAAAGTTGCAC ATAAAAATAAAAACTAAAACAAAAACGTAATTTATCCTTCCTTATATATATCATTATATATATAT ATATATATAAATATATATTTTTTTTTGTTTTTTTTTTTTATTATTCCTAATTATATGAATTCACT TATTTTTTTCATTATATACAATATGATAAAATATAAATAAAAAATTGATTTCTTTAAAAAGGTAT TTTAATAATTACATAAAATAATATATATATATATATATTAATATA Right flanking sequence: Indices 155104 -- 155603 CTATATTTAAAATATATCAAACAACCCAAAACTAATAACTTTCAAAAAAAAATTCAAAAAATATA GAAAATTATAAAAAATGCATTTTTCCGAAATAATTATAATAAAATTAAATATCACTGTTCTTTTT ATAAGAAAAATATATATTTATATTTAAAATTTATATAATTTTATTAAATATTATTTTATTTTTAT ATAACACAATAATATTATATTATATTATATATATTTATAAAAATAATTATTTTATATATTTATTA TATATATATAATTTATGCCTTATTTTTTCTTTTATATTATTTTATATATTTTTTTAAAAAAAACA AATATATATATATATATATATATATATATATATATTTTAATATATTAATATACATATTTGCAAAT GCATATATTATTTATACGTACTAATAAAATAAATCAAAACATGACGAAGGAATATTATATATATA TATATATTATAATATATATATATAATTTTATATATATATATTTAA Found at i:155173 original size:11 final size:11 Alignment explanation
Indices: 155148--155173 Score: 31 Period size: 11 Copynumber: 2.4 Consensus size: 11 155138 ATAACTTTCA * 155148 AAAAAAAATTC 1 AAAAAAAATAC * * 155159 AAAAAATATAG 1 AAAAAAAATAC 155170 AAAA 1 AAAA 155174 TTATAAAAAA Statistics Matches: 12, Mismatches: 3, Indels: 0 0.80 0.20 0.00 Matches are distributed among these distances: 11 12 1.00 ACGTcount: A:0.77, C:0.04, G:0.04, T:0.15 Consensus pattern (11 bp): AAAAAAAATAC Left flanking sequence: Indices 154648 -- 155147 ACCACATATATAAATATAATATATATATAATATATATAATATATATAATATATATAATATATATT TTATGTTATTTTTATTTTACTTCATTATATTTATTCTCTGTCCATATGAACAAATATATTATAAA AAGTTGCACATAAAAATAAAAACTAAAACAAAAACGTAATTTATCCTTCCTTATATATATCATTA TATATATATATATATATAAATATATATTTTTTTTTGTTTTTTTTTTTTATTATTCCTAATTATAT GAATTCACTTATTTTTTTCATTATATACAATATGATAAAATATAAATAAAAAATTGATTTCTTTA AAAAGGTATTTTAATAATTACATAAAATAATATATATATATATATATTAATATATTTTTTTATCT TTTTTTTTTTCTTTTTTCTTTTTTTTTTTTTTTTTCTTTCTTTTTTTTTTTTTTTCTTTTTTTTT TCTATATTTAAAATATATCAAACAACCCAAAACTAATAACTTTCA Right flanking sequence: Indices 155174 -- 155673 TTATAAAAAATGCATTTTTCCGAAATAATTATAATAAAATTAAATATCACTGTTCTTTTTATAAG AAAAATATATATTTATATTTAAAATTTATATAATTTTATTAAATATTATTTTATTTTTATATAAC ACAATAATATTATATTATATTATATATATTTATAAAAATAATTATTTTATATATTTATTATATAT ATATAATTTATGCCTTATTTTTTCTTTTATATTATTTTATATATTTTTTTAAAAAAAACAAATAT ATATATATATATATATATATATATATATATTTTAATATATTAATATACATATTTGCAAATGCATA TATTATTTATACGTACTAATAAAATAAATCAAAACATGACGAAGGAATATTATATATATATATAT ATTATAATATATATATATAATTTTATATATATATATTTAAAAATTAAGAAAAAAAAATACTTTTT TATATATATAATACTATATATTTTATTGTATATTATTCATATATA Found at i:155270 original size:21 final size:21 Alignment explanation
Indices: 155244--155285 Score: 56 Period size: 21 Copynumber: 2.0 Consensus size: 21 155234 ATAAGAAAAA * * 155244 TATATATTTATATTTAAAATT 1 TATATAATTATATTAAAAATT * * 155265 TATATAATTTTATTAAATATT 1 TATATAATTATATTAAAAATT 155286 ATTTTATTTT Statistics Matches: 17, Mismatches: 4, Indels: 0 0.81 0.19 0.00 Matches are distributed among these distances: 21 17 1.00 ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57 Consensus pattern (21 bp): TATATAATTATATTAAAAATT Left flanking sequence: Indices 154744 -- 155243 TATTCTCTGTCCATATGAACAAATATATTATAAAAAGTTGCACATAAAAATAAAAACTAAAACAA AAACGTAATTTATCCTTCCTTATATATATCATTATATATATATATATATATAAATATATATTTTT TTTTGTTTTTTTTTTTTATTATTCCTAATTATATGAATTCACTTATTTTTTTCATTATATACAAT ATGATAAAATATAAATAAAAAATTGATTTCTTTAAAAAGGTATTTTAATAATTACATAAAATAAT ATATATATATATATATTAATATATTTTTTTATCTTTTTTTTTTTCTTTTTTCTTTTTTTTTTTTT TTTTCTTTCTTTTTTTTTTTTTTTCTTTTTTTTTTCTATATTTAAAATATATCAAACAACCCAAA ACTAATAACTTTCAAAAAAAAATTCAAAAAATATAGAAAATTATAAAAAATGCATTTTTCCGAAA TAATTATAATAAAATTAAATATCACTGTTCTTTTTATAAGAAAAA Right flanking sequence: Indices 155286 -- 155785 ATTTTATTTTTATATAACACAATAATATTATATTATATTATATATATTTATAAAAATAATTATTT TATATATTTATTATATATATATAATTTATGCCTTATTTTTTCTTTTATATTATTTTATATATTTT TTTAAAAAAAACAAATATATATATATATATATATATATATATATATATTTTAATATATTAATATA CATATTTGCAAATGCATATATTATTTATACGTACTAATAAAATAAATCAAAACATGACGAAGGAA TATTATATATATATATATATTATAATATATATATATAATTTTATATATATATATTTAAAAATTAA GAAAAAAAAATACTTTTTTATATATATAATACTATATATTTTATTGTATATTATTCATATATATA ATTATATATATTATTTATTTAATATTTATACACAATATATTTTCTAGTATTATATATATTTTTAA GAGCTAATATATTTTTCTTCATATATAATTACTTGCGTAAAAATA Found at i:155315 original size:36 final size:36 Alignment explanation
Indices: 155275--155374 Score: 98 Period size: 37 Copynumber: 2.8 Consensus size: 36 155265 TATATAATTT * * * 155275 TATTAAATATTATTTTATTTTTATATAACACAATAA 1 TATTATATATTATTTTATATTTATATAAAACAATAA ** * * 155311 TATTATATTATATTATATATATTTATA-AAAATAATTA 1 TATTATATATTATT-T-TATATTTATATAAAACAATAA * * * 155348 TTTTATATATT-TATTATATATATATAA 1 TATTATATATTATTTTATATTTATATAA 155375 TTTATGCCTT Statistics Matches: 49, Mismatches: 12, Indels: 7 0.72 0.18 0.10 Matches are distributed among these distances: 34 9 0.18 35 3 0.06 36 12 0.24 37 16 0.33 38 9 0.18 ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53 Consensus pattern (36 bp): TATTATATATTATTTTATATTTATATAAAACAATAA Left flanking sequence: Indices 154775 -- 155274 AAAAAGTTGCACATAAAAATAAAAACTAAAACAAAAACGTAATTTATCCTTCCTTATATATATCA TTATATATATATATATATATAAATATATATTTTTTTTTGTTTTTTTTTTTTATTATTCCTAATTA TATGAATTCACTTATTTTTTTCATTATATACAATATGATAAAATATAAATAAAAAATTGATTTCT TTAAAAAGGTATTTTAATAATTACATAAAATAATATATATATATATATATTAATATATTTTTTTA TCTTTTTTTTTTTCTTTTTTCTTTTTTTTTTTTTTTTTCTTTCTTTTTTTTTTTTTTTCTTTTTT TTTTCTATATTTAAAATATATCAAACAACCCAAAACTAATAACTTTCAAAAAAAAATTCAAAAAA TATAGAAAATTATAAAAAATGCATTTTTCCGAAATAATTATAATAAAATTAAATATCACTGTTCT TTTTATAAGAAAAATATATATTTATATTTAAAATTTATATAATTT Right flanking sequence: Indices 155375 -- 155874 TTTATGCCTTATTTTTTCTTTTATATTATTTTATATATTTTTTTAAAAAAAACAAATATATATAT ATATATATATATATATATATATATTTTAATATATTAATATACATATTTGCAAATGCATATATTAT TTATACGTACTAATAAAATAAATCAAAACATGACGAAGGAATATTATATATATATATATATTATA ATATATATATATAATTTTATATATATATATTTAAAAATTAAGAAAAAAAAATACTTTTTTATATA TATAATACTATATATTTTATTGTATATTATTCATATATATAATTATATATATTATTTATTTAATA TTTATACACAATATATTTTCTAGTATTATATATATTTTTAAGAGCTAATATATTTTTCTTCATAT ATAATTACTTGCGTAAAAATAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTAAATTT ATAAAATAATATTTGTTTTTAATTAAAATGGGACTATAAAAAATG Found at i:155411 original size:12 final size:12 Alignment explanation
Indices: 155396--155419 Score: 41 Period size: 12 Copynumber: 2.0 Consensus size: 12 155386 TTTTTTCTTT 155396 TATATTATTTTA 1 TATATTATTTTA * 155408 TATATTTTTTTA 1 TATATTATTTTA 155420 AAAAAAACAA Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 12 11 1.00 ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71 Consensus pattern (12 bp): TATATTATTTTA Left flanking sequence: Indices 154896 -- 155395 TCCTAATTATATGAATTCACTTATTTTTTTCATTATATACAATATGATAAAATATAAATAAAAAA TTGATTTCTTTAAAAAGGTATTTTAATAATTACATAAAATAATATATATATATATATATTAATAT ATTTTTTTATCTTTTTTTTTTTCTTTTTTCTTTTTTTTTTTTTTTTTCTTTCTTTTTTTTTTTTT TTCTTTTTTTTTTCTATATTTAAAATATATCAAACAACCCAAAACTAATAACTTTCAAAAAAAAA TTCAAAAAATATAGAAAATTATAAAAAATGCATTTTTCCGAAATAATTATAATAAAATTAAATAT CACTGTTCTTTTTATAAGAAAAATATATATTTATATTTAAAATTTATATAATTTTATTAAATATT ATTTTATTTTTATATAACACAATAATATTATATTATATTATATATATTTATAAAAATAATTATTT TATATATTTATTATATATATATAATTTATGCCTTATTTTTTCTTT Right flanking sequence: Indices 155420 -- 155919 AAAAAAACAAATATATATATATATATATATATATATATATATATTTTAATATATTAATATACATA TTTGCAAATGCATATATTATTTATACGTACTAATAAAATAAATCAAAACATGACGAAGGAATATT ATATATATATATATATTATAATATATATATATAATTTTATATATATATATTTAAAAATTAAGAAA AAAAAATACTTTTTTATATATATAATACTATATATTTTATTGTATATTATTCATATATATAATTA TATATATTATTTATTTAATATTTATACACAATATATTTTCTAGTATTATATATATTTTTAAGAGC TAATATATTTTTCTTCATATATAATTACTTGCGTAAAAATAAGGAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAATTTAAATTTATAAAATAATATTTGTTTTTAATTAAAATGGGACTATAAAAAATG ATGAGAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG Found at i:155575 original size:16 final size:16 Alignment explanation
Indices: 155545--155597 Score: 76 Period size: 16 Copynumber: 3.2 Consensus size: 16 155535 TGACGAAGGA 155545 ATATTATATATATATAT 1 ATATTATA-ATATATAT 155562 ATATTATAATATATAT 1 ATATTATAATATATAT * ** 155578 ATATAATTTTATATAT 1 ATATTATAATATATAT 155594 ATAT 1 ATAT 155598 ATTTAAAAAT Statistics Matches: 33, Mismatches: 3, Indels: 1 0.89 0.08 0.03 Matches are distributed among these distances: 16 25 0.76 17 8 0.24 ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53 Consensus pattern (16 bp): ATATTATAATATATAT Left flanking sequence: Indices 155045 -- 155544 TTTCTTTTTTCTTTTTTTTTTTTTTTTTCTTTCTTTTTTTTTTTTTTTCTTTTTTTTTTCTATAT TTAAAATATATCAAACAACCCAAAACTAATAACTTTCAAAAAAAAATTCAAAAAATATAGAAAAT TATAAAAAATGCATTTTTCCGAAATAATTATAATAAAATTAAATATCACTGTTCTTTTTATAAGA AAAATATATATTTATATTTAAAATTTATATAATTTTATTAAATATTATTTTATTTTTATATAACA CAATAATATTATATTATATTATATATATTTATAAAAATAATTATTTTATATATTTATTATATATA TATAATTTATGCCTTATTTTTTCTTTTATATTATTTTATATATTTTTTTAAAAAAAACAAATATA TATATATATATATATATATATATATATATTTTAATATATTAATATACATATTTGCAAATGCATAT ATTATTTATACGTACTAATAAAATAAATCAAAACATGACGAAGGA Right flanking sequence: Indices 155598 -- 156097 ATTTAAAAATTAAGAAAAAAAAATACTTTTTTATATATATAATACTATATATTTTATTGTATATT ATTCATATATATAATTATATATATTATTTATTTAATATTTATACACAATATATTTTCTAGTATTA TATATATTTTTAAGAGCTAATATATTTTTCTTCATATATAATTACTTGCGTAAAAATAAGGAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAATTTAAATTTATAAAATAATATTTGTTTTTAATTAAAA TGGGACTATAAAAAATGATGAGAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTGA AAATTTTAATATACATATAATAACATTTTTATATAAATAAATTACTTCTTGACATTTTTCATTTT ACGTAAATTTTTTTTTTTTTTTTTTTTTTTCCCCAAATAATTATATATAATTATATTATATATTA ATAAATATATAAAATATATATTTTTAATTATATTTTAATGATTAT Found at i:155670 original size:23 final size:21 Alignment explanation
Indices: 155633--155717 Score: 71 Period size: 22 Copynumber: 3.9 Consensus size: 21 155623 CTTTTTTATA * * 155633 TATATAATACTATATATTTTAT 1 TATAT-ATATTATATATTTAAT * * 155655 TGTATATTATTCATATATATAAT 1 TATATA-TATT-ATATATTTAAT * 155678 TATATATATTATTTATTTAAT 1 TATATATATTATATATTTAAT * * ** 155699 ATTTATACACAATATATTT 1 -TATATATATTATATATTT 155718 TCTAGTATTA Statistics Matches: 48, Mismatches: 12, Indels: 6 0.73 0.18 0.09 Matches are distributed among these distances: 21 10 0.21 22 24 0.50 23 14 0.29 ACGTcount: A:0.40, C:0.05, G:0.01, T:0.54 Consensus pattern (21 bp): TATATATATTATATATTTAAT Left flanking sequence: Indices 155133 -- 155632 AACTAATAACTTTCAAAAAAAAATTCAAAAAATATAGAAAATTATAAAAAATGCATTTTTCCGAA ATAATTATAATAAAATTAAATATCACTGTTCTTTTTATAAGAAAAATATATATTTATATTTAAAA TTTATATAATTTTATTAAATATTATTTTATTTTTATATAACACAATAATATTATATTATATTATA TATATTTATAAAAATAATTATTTTATATATTTATTATATATATATAATTTATGCCTTATTTTTTC TTTTATATTATTTTATATATTTTTTTAAAAAAAACAAATATATATATATATATATATATATATAT ATATATTTTAATATATTAATATACATATTTGCAAATGCATATATTATTTATACGTACTAATAAAA TAAATCAAAACATGACGAAGGAATATTATATATATATATATATTATAATATATATATATAATTTT ATATATATATATTTAAAAATTAAGAAAAAAAAATACTTTTTTATA Right flanking sequence: Indices 155718 -- 156217 TCTAGTATTATATATATTTTTAAGAGCTAATATATTTTTCTTCATATATAATTACTTGCGTAAAA ATAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTAAATTTATAAAATAATATTTGTTT TTAATTAAAATGGGACTATAAAAAATGATGAGAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAGTGAAAATTTTAATATACATATAATAACATTTTTATATAAATAAATTACTTCTTGACAT TTTTCATTTTACGTAAATTTTTTTTTTTTTTTTTTTTTTTCCCCAAATAATTATATATAATTATA TTATATATTAATAAATATATAAAATATATATTTTTAATTATATTTTAATGATTATTTTGAAAAAC TGAAATAATTCAAAAAGGACTTTATATATATATATATATATATATATATTTTTTTTTTTTGCGCA GCATAAAAAAAAATAAAAAATAAATAATGGCACAGTAAAACTATT Found at i:155714 original size:39 final size:37 Alignment explanation
Indices: 155632--155715 Score: 90 Period size: 37 Copynumber: 2.2 Consensus size: 37 155622 ACTTTTTTAT * * * * 155632 ATATATAATACTATATATTTTATTGTATATTATTCAT 1 ATATATAATAATATATATTTTATTGAATATTATACAC * * 155669 ATATATAATTATATATATTATTTATTTAATATTTATACAC 1 ATATATAATAATATATA-T-TTTATTGAATA-TTATACAC 155709 AATATAT 1 -ATATAT 155716 TTTCTAGTAT Statistics Matches: 37, Mismatches: 6, Indels: 4 0.79 0.13 0.09 Matches are distributed among these distances: 37 15 0.41 38 1 0.03 39 9 0.24 40 6 0.16 41 6 0.16 ACGTcount: A:0.42, C:0.05, G:0.01, T:0.52 Consensus pattern (37 bp): ATATATAATAATATATATTTTATTGAATATTATACAC Left flanking sequence: Indices 155132 -- 155631 AAACTAATAACTTTCAAAAAAAAATTCAAAAAATATAGAAAATTATAAAAAATGCATTTTTCCGA AATAATTATAATAAAATTAAATATCACTGTTCTTTTTATAAGAAAAATATATATTTATATTTAAA ATTTATATAATTTTATTAAATATTATTTTATTTTTATATAACACAATAATATTATATTATATTAT ATATATTTATAAAAATAATTATTTTATATATTTATTATATATATATAATTTATGCCTTATTTTTT CTTTTATATTATTTTATATATTTTTTTAAAAAAAACAAATATATATATATATATATATATATATA TATATATTTTAATATATTAATATACATATTTGCAAATGCATATATTATTTATACGTACTAATAAA ATAAATCAAAACATGACGAAGGAATATTATATATATATATATATTATAATATATATATATAATTT TATATATATATATTTAAAAATTAAGAAAAAAAAATACTTTTTTAT Right flanking sequence: Indices 155716 -- 156215 TTTCTAGTATTATATATATTTTTAAGAGCTAATATATTTTTCTTCATATATAATTACTTGCGTAA AAATAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTAAATTTATAAAATAATATTTGT TTTTAATTAAAATGGGACTATAAAAAATGATGAGAAATAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAGTGAAAATTTTAATATACATATAATAACATTTTTATATAAATAAATTACTTCTTGAC ATTTTTCATTTTACGTAAATTTTTTTTTTTTTTTTTTTTTTTCCCCAAATAATTATATATAATTA TATTATATATTAATAAATATATAAAATATATATTTTTAATTATATTTTAATGATTATTTTGAAAA ACTGAAATAATTCAAAAAGGACTTTATATATATATATATATATATATATATTTTTTTTTTTTGCG CAGCATAAAAAAAAATAAAAAATAAATAATGGCACAGTAAAACTA Found at i:156060 original size:12 final size:12 Alignment explanation
Indices: 156045--156086 Score: 42 Period size: 12 Copynumber: 3.6 Consensus size: 12 156035 TAATTATATT 156045 ATATATTAATAA 1 ATATATTAATAA * * 156057 ATATA-TAAAAT 1 ATATATTAATAA ** 156068 ATATATTTTTAA 1 ATATATTAATAA * 156080 TTATATT 1 ATATATT 156087 TTAATGATTA Statistics Matches: 22, Mismatches: 7, Indels: 2 0.71 0.23 0.06 Matches are distributed among these distances: 11 9 0.41 12 13 0.59 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (12 bp): ATATATTAATAA Left flanking sequence: Indices 155545 -- 156044 ATATTATATATATATATATATTATAATATATATATATAATTTTATATATATATATTTAAAAATTA AGAAAAAAAAATACTTTTTTATATATATAATACTATATATTTTATTGTATATTATTCATATATAT AATTATATATATTATTTATTTAATATTTATACACAATATATTTTCTAGTATTATATATATTTTTA AGAGCTAATATATTTTTCTTCATATATAATTACTTGCGTAAAAATAAGGAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAATTTAAATTTATAAAATAATATTTGTTTTTAATTAAAATGGGACTATAAA AAATGATGAGAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTGAAAATTTTAATAT ACATATAATAACATTTTTATATAAATAAATTACTTCTTGACATTTTTCATTTTACGTAAATTTTT TTTTTTTTTTTTTTTTTTCCCCAAATAATTATATATAATTATATT Right flanking sequence: Indices 156087 -- 156586 TTAATGATTATTTTGAAAAACTGAAATAATTCAAAAAGGACTTTATATATATATATATATATATA TATATTTTTTTTTTTTGCGCAGCATAAAAAAAAATAAAAAATAAATAATGGCACAGTAAAACTAT TTCTGTCGCATATATTTAATTTTTTTTTCTGAGGAAAATATCGTATTGAATAAATATTATATATA TATATTTATTTATTTATTTATTTATTTAATAAAGTTATAAATAGTTCGTTTTATAAGTGCACATA AAAGTAAAAAAATTTCTTATACCTTCCTATAGACATATAACACATAATATTTTTCTCCTTTTCTT TTTCTTTTTTGTAACATGATGTATTATACATGTTAAAAAATGTAGTTTTATAAAATCACACAATA TAAGAAATATGTTTATATATATTTTTCTTTCTTTATTATGAGAAATTTATTATAATATAATATTG GGAAATGTTCTTATAATAAGTCGGAAGGTATTACTTTCAAATTCA Found at i:156087 original size:12 final size:12 Alignment explanation
Indices: 156069--156100 Score: 41 Period size: 11 Copynumber: 2.7 Consensus size: 12 156059 ATATAAAATA 156069 TATATTTTTAAT 1 TATATTTTTAAT 156081 TATA-TTTTAAT 1 TATATTTTTAAT * 156092 GATTATTTT 1 TA-TATTTT 156101 GAAAAACTGA Statistics Matches: 17, Mismatches: 1, Indels: 3 0.81 0.05 0.14 Matches are distributed among these distances: 11 8 0.47 12 6 0.35 13 3 0.18 ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66 Consensus pattern (12 bp): TATATTTTTAAT Left flanking sequence: Indices 155569 -- 156068 AATATATATATATAATTTTATATATATATATTTAAAAATTAAGAAAAAAAAATACTTTTTTATAT ATATAATACTATATATTTTATTGTATATTATTCATATATATAATTATATATATTATTTATTTAAT ATTTATACACAATATATTTTCTAGTATTATATATATTTTTAAGAGCTAATATATTTTTCTTCATA TATAATTACTTGCGTAAAAATAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTAAATT TATAAAATAATATTTGTTTTTAATTAAAATGGGACTATAAAAAATGATGAGAAATAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAGTGAAAATTTTAATATACATATAATAACATTTTTATATAA ATAAATTACTTCTTGACATTTTTCATTTTACGTAAATTTTTTTTTTTTTTTTTTTTTTTCCCCAA ATAATTATATATAATTATATTATATATTAATAAATATATAAAATA Right flanking sequence: Indices 156101 -- 156600 GAAAAACTGAAATAATTCAAAAAGGACTTTATATATATATATATATATATATATATTTTTTTTTT TTGCGCAGCATAAAAAAAAATAAAAAATAAATAATGGCACAGTAAAACTATTTCTGTCGCATATA TTTAATTTTTTTTTCTGAGGAAAATATCGTATTGAATAAATATTATATATATATATTTATTTATT TATTTATTTATTTAATAAAGTTATAAATAGTTCGTTTTATAAGTGCACATAAAAGTAAAAAAATT TCTTATACCTTCCTATAGACATATAACACATAATATTTTTCTCCTTTTCTTTTTCTTTTTTGTAA CATGATGTATTATACATGTTAAAAAATGTAGTTTTATAAAATCACACAATATAAGAAATATGTTT ATATATATTTTTCTTTCTTTATTATGAGAAATTTATTATAATATAATATTGGGAAATGTTCTTAT AATAAGTCGGAAGGTATTACTTTCAAATTCATCATATGGTATAAA Found at i:156088 original size:11 final size:11 Alignment explanation
Indices: 156069--156100 Score: 39 Period size: 12 Copynumber: 2.7 Consensus size: 11 156059 ATATAAAATA 156069 TATATTTTTAAT 1 TATA-TTTTAAT 156081 TATATTTTAAT 1 TATATTTTAAT * 156092 GATTATTTT 1 TA-TATTTT 156101 GAAAAACTGA Statistics Matches: 18, Mismatches: 1, Indels: 2 0.86 0.05 0.10 Matches are distributed among these distances: 11 8 0.44 12 10 0.56 ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66 Consensus pattern (11 bp): TATATTTTAAT Left flanking sequence: Indices 155569 -- 156068 AATATATATATATAATTTTATATATATATATTTAAAAATTAAGAAAAAAAAATACTTTTTTATAT ATATAATACTATATATTTTATTGTATATTATTCATATATATAATTATATATATTATTTATTTAAT ATTTATACACAATATATTTTCTAGTATTATATATATTTTTAAGAGCTAATATATTTTTCTTCATA TATAATTACTTGCGTAAAAATAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTAAATT TATAAAATAATATTTGTTTTTAATTAAAATGGGACTATAAAAAATGATGAGAAATAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAGTGAAAATTTTAATATACATATAATAACATTTTTATATAA ATAAATTACTTCTTGACATTTTTCATTTTACGTAAATTTTTTTTTTTTTTTTTTTTTTTCCCCAA ATAATTATATATAATTATATTATATATTAATAAATATATAAAATA Right flanking sequence: Indices 156101 -- 156600 GAAAAACTGAAATAATTCAAAAAGGACTTTATATATATATATATATATATATATATTTTTTTTTT TTGCGCAGCATAAAAAAAAATAAAAAATAAATAATGGCACAGTAAAACTATTTCTGTCGCATATA TTTAATTTTTTTTTCTGAGGAAAATATCGTATTGAATAAATATTATATATATATATTTATTTATT TATTTATTTATTTAATAAAGTTATAAATAGTTCGTTTTATAAGTGCACATAAAAGTAAAAAAATT TCTTATACCTTCCTATAGACATATAACACATAATATTTTTCTCCTTTTCTTTTTCTTTTTTGTAA CATGATGTATTATACATGTTAAAAAATGTAGTTTTATAAAATCACACAATATAAGAAATATGTTT ATATATATTTTTCTTTCTTTATTATGAGAAATTTATTATAATATAATATTGGGAAATGTTCTTAT AATAAGTCGGAAGGTATTACTTTCAAATTCATCATATGGTATAAA Found at i:156190 original size:10 final size:11 Alignment explanation
Indices: 156175--156199 Score: 43 Period size: 10 Copynumber: 2.4 Consensus size: 11 156165 TTTGCGCAGC 156175 ATAAAAAA-AA 1 ATAAAAAATAA 156185 ATAAAAAATAA 1 ATAAAAAATAA 156196 ATAA 1 ATAA 156200 TGGCACAGTA Statistics Matches: 14, Mismatches: 0, Indels: 1 0.93 0.00 0.07 Matches are distributed among these distances: 10 8 0.57 11 6 0.43 ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16 Consensus pattern (11 bp): ATAAAAAATAA Left flanking sequence: Indices 155675 -- 156174 AATTATATATATTATTTATTTAATATTTATACACAATATATTTTCTAGTATTATATATATTTTTA AGAGCTAATATATTTTTCTTCATATATAATTACTTGCGTAAAAATAAGGAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAATTTAAATTTATAAAATAATATTTGTTTTTAATTAAAATGGGACTATAAA AAATGATGAGAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTGAAAATTTTAATAT ACATATAATAACATTTTTATATAAATAAATTACTTCTTGACATTTTTCATTTTACGTAAATTTTT TTTTTTTTTTTTTTTTTTCCCCAAATAATTATATATAATTATATTATATATTAATAAATATATAA AATATATATTTTTAATTATATTTTAATGATTATTTTGAAAAACTGAAATAATTCAAAAAGGACTT TATATATATATATATATATATATATATTTTTTTTTTTTGCGCAGC Right flanking sequence: Indices 156200 -- 156699 TGGCACAGTAAAACTATTTCTGTCGCATATATTTAATTTTTTTTTCTGAGGAAAATATCGTATTG AATAAATATTATATATATATATTTATTTATTTATTTATTTATTTAATAAAGTTATAAATAGTTCG TTTTATAAGTGCACATAAAAGTAAAAAAATTTCTTATACCTTCCTATAGACATATAACACATAAT ATTTTTCTCCTTTTCTTTTTCTTTTTTGTAACATGATGTATTATACATGTTAAAAAATGTAGTTT TATAAAATCACACAATATAAGAAATATGTTTATATATATTTTTCTTTCTTTATTATGAGAAATTT ATTATAATATAATATTGGGAAATGTTCTTATAATAAGTCGGAAGGTATTACTTTCAAATTCATCA TATGGTATAAAATAAAATAAAATAAAATCGTTTAGGAATATATTAAAAATATATTTAACAAGATT GTTCTTAATTTTTTTTTTTTTTTTTTTTTAATTTAATACTTATAT Found at i:156998 original size:12 final size:12 Alignment explanation
Indices: 156981--157006 Score: 38 Period size: 12 Copynumber: 2.2 Consensus size: 12 156971 CCTCATGAAA * 156981 AAAAATCAAGTG 1 AAAAATCAACTG * 156993 AAAAATGAACTG 1 AAAAATCAACTG 157005 AA 1 AA 157007 GACCTATTCC Statistics Matches: 12, Mismatches: 2, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 12 12 1.00 ACGTcount: A:0.62, C:0.08, G:0.15, T:0.15 Consensus pattern (12 bp): AAAAATCAACTG Left flanking sequence: Indices 156481 -- 156980 AAATATGTTTATATATATTTTTCTTTCTTTATTATGAGAAATTTATTATAATATAATATTGGGAA ATGTTCTTATAATAAGTCGGAAGGTATTACTTTCAAATTCATCATATGGTATAAAATAAAATAAA ATAAAATCGTTTAGGAATATATTAAAAATATATTTAACAAGATTGTTCTTAATTTTTTTTTTTTT TTTTTTTTAATTTAATACTTATATATTCTAGCATCTTTATACTTATATACATATTGTATAAAGAA CATGAATTAAGCAACACAAATTTAGACTCTAAAAAATAACATACACATTATTCGTATATAAATGA AATGTTATAATAATATAATATAAGGATCACACACAAACACACATATATATATATATATATATATA TATATATTTATTTATTTATTTATTTCCTCTGTGTCAAGCAATATACATACATATAAAAATACATT TACACATATTCTCATACAACACATATATTTATTATCCTCATGAAA Right flanking sequence: Indices 157007 -- 157506 GACCTATTCCAAGAAATATTATTGATGTTAATATATCATATGTGACATTTTTTTTTTTTTTTTTT ATAGACAGTGATAAAGGTCGAGGTTGTGATGATTTGTCATCTTCTTTTCAAATTAGTTTTGGACA TCTTCAATTAGGAAGAAGCCATTATTTTGATGTGAATATGTTTATGTTAATATTTTTATGTGAGT ATTTATTTGTCTTTATTTTTTTTTAAGATATACAACATCCAATACACATATTCATATGGGATGAA CCCATTAGTTACATTTAATTCACGATAATCATCTTCTGAATAAATGATTACATTTTTTTTTTTTT TTTTTTTTTATAATTCTTTGAGGAGTATCTGTAAACATTCATAGTTCTTATGACTACATGAATTT ATGTGCCTATACATTCAAAATATCCTTCACATATTTATTTTCCAGAATATTATGAACAAGTTTAT TTTTATCAATAGTTATTTGATATTCACTATGATATTTATTTTTGC Found at i:157204 original size:14 final size:14 Alignment explanation
Indices: 157159--157205 Score: 66 Period size: 14 Copynumber: 3.4 Consensus size: 14 157149 AAGAAGCCAT * 157159 TATTTTGATGTGAA 1 TATTTTTATGTGAA * * 157173 TATGTTTATGTTAA 1 TATTTTTATGTGAA * 157187 TATTTTTATGTGAG 1 TATTTTTATGTGAA 157201 TATTT 1 TATTT 157206 ATTTGTCTTT Statistics Matches: 27, Mismatches: 6, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 14 27 1.00 ACGTcount: A:0.26, C:0.00, G:0.17, T:0.57 Consensus pattern (14 bp): TATTTTTATGTGAA Left flanking sequence: Indices 156659 -- 157158 TTAATTTTTTTTTTTTTTTTTTTTTAATTTAATACTTATATATTCTAGCATCTTTATACTTATAT ACATATTGTATAAAGAACATGAATTAAGCAACACAAATTTAGACTCTAAAAAATAACATACACAT TATTCGTATATAAATGAAATGTTATAATAATATAATATAAGGATCACACACAAACACACATATAT ATATATATATATATATATATATATTTATTTATTTATTTATTTCCTCTGTGTCAAGCAATATACAT ACATATAAAAATACATTTACACATATTCTCATACAACACATATATTTATTATCCTCATGAAAAAA AATCAAGTGAAAAATGAACTGAAGACCTATTCCAAGAAATATTATTGATGTTAATATATCATATG TGACATTTTTTTTTTTTTTTTTTATAGACAGTGATAAAGGTCGAGGTTGTGATGATTTGTCATCT TCTTTTCAAATTAGTTTTGGACATCTTCAATTAGGAAGAAGCCAT Right flanking sequence: Indices 157206 -- 157705 ATTTGTCTTTATTTTTTTTTAAGATATACAACATCCAATACACATATTCATATGGGATGAACCCA TTAGTTACATTTAATTCACGATAATCATCTTCTGAATAAATGATTACATTTTTTTTTTTTTTTTT TTTTTATAATTCTTTGAGGAGTATCTGTAAACATTCATAGTTCTTATGACTACATGAATTTATGT GCCTATACATTCAAAATATCCTTCACATATTTATTTTCCAGAATATTATGAACAAGTTTATTTTT ATCAATAGTTATTTGATATTCACTATGATATTTATTTTTGCGATTTGTATAATGATTTTTTTTTT TTCTTATTCAACCCATATTTTTAAAATCTATCTATCTATATATATATATATATATATATATATAT ATATATATATATATATTTCAGTAGTTTCACTTTTAATTAGTACCCTTATATTCTTCATACTTTTC AACATGTTCTTTTATACAATACAATAATCTTCTATCTATTCTTCA Found at i:157218 original size:28 final size:28 Alignment explanation
Indices: 157156--157221 Score: 76 Period size: 28 Copynumber: 2.4 Consensus size: 28 157146 AGGAAGAAGC * * 157156 CATTATTTTGATGTGAATATGTTTATGT 1 CATTATTTTTATGTGAATATGTATATGT * * * * * 157184 TAATATTTTTATGTGAGTATTTATTTGT 1 CATTATTTTTATGTGAATATGTATATGT * 157212 CTTTATTTTT 1 CATTATTTTT 157222 TTTTAAGATA Statistics Matches: 28, Mismatches: 10, Indels: 0 0.74 0.26 0.00 Matches are distributed among these distances: 28 28 1.00 ACGTcount: A:0.23, C:0.03, G:0.14, T:0.61 Consensus pattern (28 bp): CATTATTTTTATGTGAATATGTATATGT Left flanking sequence: Indices 156656 -- 157155 TTCTTAATTTTTTTTTTTTTTTTTTTTTAATTTAATACTTATATATTCTAGCATCTTTATACTTA TATACATATTGTATAAAGAACATGAATTAAGCAACACAAATTTAGACTCTAAAAAATAACATACA CATTATTCGTATATAAATGAAATGTTATAATAATATAATATAAGGATCACACACAAACACACATA TATATATATATATATATATATATATATTTATTTATTTATTTATTTCCTCTGTGTCAAGCAATATA CATACATATAAAAATACATTTACACATATTCTCATACAACACATATATTTATTATCCTCATGAAA AAAAATCAAGTGAAAAATGAACTGAAGACCTATTCCAAGAAATATTATTGATGTTAATATATCAT ATGTGACATTTTTTTTTTTTTTTTTTATAGACAGTGATAAAGGTCGAGGTTGTGATGATTTGTCA TCTTCTTTTCAAATTAGTTTTGGACATCTTCAATTAGGAAGAAGC Right flanking sequence: Indices 157222 -- 157721 TTTTAAGATATACAACATCCAATACACATATTCATATGGGATGAACCCATTAGTTACATTTAATT CACGATAATCATCTTCTGAATAAATGATTACATTTTTTTTTTTTTTTTTTTTTTATAATTCTTTG AGGAGTATCTGTAAACATTCATAGTTCTTATGACTACATGAATTTATGTGCCTATACATTCAAAA TATCCTTCACATATTTATTTTCCAGAATATTATGAACAAGTTTATTTTTATCAATAGTTATTTGA TATTCACTATGATATTTATTTTTGCGATTTGTATAATGATTTTTTTTTTTTCTTATTCAACCCAT ATTTTTAAAATCTATCTATCTATATATATATATATATATATATATATATATATATATATATATAT TTCAGTAGTTTCACTTTTAATTAGTACCCTTATATTCTTCATACTTTTCAACATGTTCTTTTATA CAATACAATAATCTTCTATCTATTCTTCAAACAATTATATATATT Found at