TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: 97739986 P. falciparum 3D7 GENOMIC chr12 Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 2271477 ACGTcount: A:0.41, C:0.10, G:0.10, T:0.40 Found at i: i:78760 original size:12 final size:12 Alignment explanation
Indices: 78739--78763 Score: 43 Period size: 12 Copynumber: 2.1 Consensus size: 12 78729 TATTCTATAA * 78739 AAATATAAACAT 1 AAAAATAAACAT 78751 AAAAATAAACAT 1 AAAAATAAACAT 78763 A 1 A 78764 CATAAATATA Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 12 12 1.00 ACGTcount: A:0.72, C:0.08, G:0.00, T:0.20 Consensus pattern (12 bp): AAAAATAAACAT Left flanking sequence: Indices 78239 -- 78738 TTATCTAAAATTAAATTCTCTTTTTTTAATGTATCGTAATAAGTACTTAAATCAACAAAATTCTG GAAATATTTACTTTCTTCATTCTTCATCACTCTAACCCAGTGATTATAAGCATCATCTTTAAATG TTTCTGATAATTCATCTAAATCATTAAAATCAGCATCTAATTCGTTATCAATTTTGTTATAAACA ACTAAACCAAATTCATCTATATAAGGTATAGCACTATAGTTACAAGACATTCCATATTTTTTTAT ATCTCTAATTATTTTTTCTTCATCACTCAAATTAACTTTCTTTGTTTTCCCATATACATCTTTTA ATAAGGTCATCATTTCTTCTTTACTTAAGGAAAATACACTAAATACTGAGGGTATACCTAAATCT AAAATATCATATTCATTTCCATTATTAGCTGAAGATAATATTCTCGAAAATCTTGAATTCAAATA ATGACTAGAAAATAAACCGTCTTCAGAACATTCATTATTCTATAA Right flanking sequence: Indices 78764 -- 79263 CATAAATATATATATATATATATATATATATATATATATAAATATCTATAAGTATACATATATAT ATCTTAATTCCCTCATTAACATGTTCAAAATAAATATAAATATATAATAATAAGCAAACTAACAT TATTATGTACAAAAAAATATATTATTATACAATTAAAAAAAAAAAAAAAAAAAGATTTAATATTT CACATTTCAGACATTATATTATTATTATTATTACCAATAATGCAACAAGAACTCCTATAACAGAT ACAACAGATTTACGAAAAAGAAAAGACCTTAAAGCACTGTACATTTTTATATTACTTTTCAAAGA ATTAAACAACTATATTTTCCAAATTATCTAATAAATTATTTATGTAATTTATATTTTAATTTTTT TCTAAAAAAATTCAAAAAACAAAAAAAAAAATATATATATCTATATACAAATAAACATATAATAT AATAATAATAACAAAAAAGAAATTATAATAATATATAAAAATATT Found at i:79433 original size:12 final size:12 Alignment explanation
Indices: 79404--79442 Score: 41 Period size: 12 Copynumber: 3.2 Consensus size: 12 79394 CTAACACATG 79404 AATAA-TAAAAA 1 AATAATTAAAAA * 79415 AATAATTAAGAA 1 AATAATTAAAAA * * 79427 GATAATTTTAAAA 1 AATAA-TTAAAAA 79440 AAT 1 AAT 79443 TCAAAATATA Statistics Matches: 21, Mismatches: 5, Indels: 2 0.75 0.18 0.07 Matches are distributed among these distances: 11 5 0.24 12 9 0.43 13 7 0.33 ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28 Consensus pattern (12 bp): AATAATTAAAAA Left flanking sequence: Indices 78904 -- 79403 AAAAAAATATATTATTATACAATTAAAAAAAAAAAAAAAAAAAGATTTAATATTTCACATTTCAG ACATTATATTATTATTATTATTACCAATAATGCAACAAGAACTCCTATAACAGATACAACAGATT TACGAAAAAGAAAAGACCTTAAAGCACTGTACATTTTTATATTACTTTTCAAAGAATTAAACAAC TATATTTTCCAAATTATCTAATAAATTATTTATGTAATTTATATTTTAATTTTTTTCTAAAAAAA TTCAAAAAACAAAAAAAAAAATATATATATCTATATACAAATAAACATATAATATAATAATAATA ACAAAAAAGAAATTATAATAATATATAAAAATATTTACTAAACCGAAGATTCTTTAAGAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTATTACACAGAATAATATATATATATAATATTT TATATAAGCATTTCTTGCTTATTATTTTTACTTTTCTAACACATG Right flanking sequence: Indices 79443 -- 79942 TCAAAATATAAAAAATGTCATTTTATGGAACATTATATATAATATACTTTAATCAATTAAATACA CCTTTTAATAATTATTTTGAAACAAAACCCTTTCCTATTAGATATATATAATATATATATATATA TATATATATTATATCTATATTATTATATATAAAAAGAAAATATTCATTTCCCAAATTCTTCTTAT TTTTCTAAGCTATAAAGAAGAATATATTATATATGTATAATTTTATACATAATAAAAAAAAATAA TAAAAATATAGATAGTACTGTATAATTGAATATCCAGAACCATTTATTAATGAATTTTTTATTCA ATATTATTTTTTCCCGAAGGAATATAAAAAAATATGTGCAATATAATATCTATATATATCTAGGA TCTGAATATAATGAGGTATCAATTTTCTATATTTCTGATCTAATATTAAATTAATAGAATTATTT TAACTAATATTTTTCAAAGCATTGTGGTATTTATTCCTTTTCTCA Found at i:79579 original size:23 final size:22 Alignment explanation
Indices: 79549--79604 Score: 80 Period size: 23 Copynumber: 2.5 Consensus size: 22 79539 TTCCTATTAG 79549 ATATATATAATATATATATATAT 1 ATATATATAATATATATATAT-T * * 79572 ATATATATATTATATCTATATT 1 ATATATATAATATATATATATT 79594 ATTATATATAA 1 A-TATATATAA 79605 AAAGAAAATA Statistics Matches: 29, Mismatches: 3, Indels: 2 0.85 0.09 0.06 Matches are distributed among these distances: 22 2 0.07 23 27 0.93 ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50 Consensus pattern (22 bp): ATATATATAATATATATATATT Left flanking sequence: Indices 79049 -- 79548 ACCTTAAAGCACTGTACATTTTTATATTACTTTTCAAAGAATTAAACAACTATATTTTCCAAATT ATCTAATAAATTATTTATGTAATTTATATTTTAATTTTTTTCTAAAAAAATTCAAAAAACAAAAA AAAAAATATATATATCTATATACAAATAAACATATAATATAATAATAATAACAAAAAAGAAATTA TAATAATATATAAAAATATTTACTAAACCGAAGATTCTTTAAGAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAACTATTACACAGAATAATATATATATATAATATTTTATATAAGCATTTCT TGCTTATTATTTTTACTTTTCTAACACATGAATAATAAAAAAATAATTAAGAAGATAATTTTAAA AAATTCAAAATATAAAAAATGTCATTTTATGGAACATTATATATAATATACTTTAATCAATTAAA TACACCTTTTAATAATTATTTTGAAACAAAACCCTTTCCTATTAG Right flanking sequence: Indices 79605 -- 80104 AAAGAAAATATTCATTTCCCAAATTCTTCTTATTTTTCTAAGCTATAAAGAAGAATATATTATAT ATGTATAATTTTATACATAATAAAAAAAAATAATAAAAATATAGATAGTACTGTATAATTGAATA TCCAGAACCATTTATTAATGAATTTTTTATTCAATATTATTTTTTCCCGAAGGAATATAAAAAAA TATGTGCAATATAATATCTATATATATCTAGGATCTGAATATAATGAGGTATCAATTTTCTATAT TTCTGATCTAATATTAAATTAATAGAATTATTTTAACTAATATTTTTCAAAGCATTGTGGTATTT ATTCCTTTTCTCATTTAGGTATATATATTAAATATATTAATTTTTCTTTTTTTTTCCATTCTTAT CAAAATTTTTAAATTCTTATGAATTAGAATTATATATATAGAATGTTCAACATTTTCTCATTTAA TATATTATATATATTTTAAAAATAAGAAAATATATATTAATATAA Found at i:79586 original size:25 final size:23 Alignment explanation
Indices: 79549--79603 Score: 78 Period size: 25 Copynumber: 2.3 Consensus size: 23 79539 TTCCTATTAG 79549 ATATATATAATATATATATATATAT 1 ATATATATAATATATATAT-TAT-T * * 79574 ATATATATTATATCTATATTATT 1 ATATATATAATATATATATTATT 79597 ATATATA 1 ATATATA 79604 AAAAGAAAAT Statistics Matches: 28, Mismatches: 2, Indels: 2 0.88 0.06 0.06 Matches are distributed among these distances: 23 8 0.29 24 3 0.11 25 17 0.61 ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51 Consensus pattern (23 bp): ATATATATAATATATATATTATT Left flanking sequence: Indices 79049 -- 79548 ACCTTAAAGCACTGTACATTTTTATATTACTTTTCAAAGAATTAAACAACTATATTTTCCAAATT ATCTAATAAATTATTTATGTAATTTATATTTTAATTTTTTTCTAAAAAAATTCAAAAAACAAAAA AAAAAATATATATATCTATATACAAATAAACATATAATATAATAATAATAACAAAAAAGAAATTA TAATAATATATAAAAATATTTACTAAACCGAAGATTCTTTAAGAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAACTATTACACAGAATAATATATATATATAATATTTTATATAAGCATTTCT TGCTTATTATTTTTACTTTTCTAACACATGAATAATAAAAAAATAATTAAGAAGATAATTTTAAA AAATTCAAAATATAAAAAATGTCATTTTATGGAACATTATATATAATATACTTTAATCAATTAAA TACACCTTTTAATAATTATTTTGAAACAAAACCCTTTCCTATTAG Right flanking sequence: Indices 79604 -- 80103 AAAAGAAAATATTCATTTCCCAAATTCTTCTTATTTTTCTAAGCTATAAAGAAGAATATATTATA TATGTATAATTTTATACATAATAAAAAAAAATAATAAAAATATAGATAGTACTGTATAATTGAAT ATCCAGAACCATTTATTAATGAATTTTTTATTCAATATTATTTTTTCCCGAAGGAATATAAAAAA ATATGTGCAATATAATATCTATATATATCTAGGATCTGAATATAATGAGGTATCAATTTTCTATA TTTCTGATCTAATATTAAATTAATAGAATTATTTTAACTAATATTTTTCAAAGCATTGTGGTATT TATTCCTTTTCTCATTTAGGTATATATATTAAATATATTAATTTTTCTTTTTTTTTCCATTCTTA TCAAAATTTTTAAATTCTTATGAATTAGAATTATATATATAGAATGTTCAACATTTTCTCATTTA ATATATTATATATATTTTAAAAATAAGAAAATATATATTAATATA Found at i:79828 original size:10 final size:11 Alignment explanation
Indices: 79808--79829 Score: 37 Period size: 10 Copynumber: 2.1 Consensus size: 11 79798 AATATGTGCA 79808 ATATAATATCT 1 ATATAATATCT 79819 ATAT-ATATCT 1 ATATAATATCT 79829 A 1 A 79830 GGATCTGAAT Statistics Matches: 11, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 10 7 0.64 11 4 0.36 ACGTcount: A:0.45, C:0.09, G:0.00, T:0.45 Consensus pattern (11 bp): ATATAATATCT Left flanking sequence: Indices 79308 -- 79807 AAAAAAAAAAAAAAAAACTATTACACAGAATAATATATATATATAATATTTTATATAAGCATTTC TTGCTTATTATTTTTACTTTTCTAACACATGAATAATAAAAAAATAATTAAGAAGATAATTTTAA AAAATTCAAAATATAAAAAATGTCATTTTATGGAACATTATATATAATATACTTTAATCAATTAA ATACACCTTTTAATAATTATTTTGAAACAAAACCCTTTCCTATTAGATATATATAATATATATAT ATATATATATATATTATATCTATATTATTATATATAAAAAGAAAATATTCATTTCCCAAATTCTT CTTATTTTTCTAAGCTATAAAGAAGAATATATTATATATGTATAATTTTATACATAATAAAAAAA AATAATAAAAATATAGATAGTACTGTATAATTGAATATCCAGAACCATTTATTAATGAATTTTTT ATTCAATATTATTTTTTCCCGAAGGAATATAAAAAAATATGTGCA Right flanking sequence: Indices 79830 -- 80329 GGATCTGAATATAATGAGGTATCAATTTTCTATATTTCTGATCTAATATTAAATTAATAGAATTA TTTTAACTAATATTTTTCAAAGCATTGTGGTATTTATTCCTTTTCTCATTTAGGTATATATATTA AATATATTAATTTTTCTTTTTTTTTCCATTCTTATCAAAATTTTTAAATTCTTATGAATTAGAAT TATATATATAGAATGTTCAACATTTTCTCATTTAATATATTATATATATTTTAAAAATAAGAAAA TATATATTAATATAATTTTATTATATAATAATTACATTAAAGTTTTTTTTTATTTCTTTTCTAGT ATTTAATTATTGAATATATAAATATATATAATATAATATAATATAATATAATATAATATAATATA ATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATA ATATAAAATATGTAATCGTAATTCATTTCTATTAATTTTTTTTTT Found at i:80673 original size:11 final size:11 Alignment explanation
Indices: 80650--80676 Score: 40 Period size: 11 Copynumber: 2.5 Consensus size: 11 80640 AAATATATGT 80650 ATAAATTAATA 1 ATAAATTAATA * * 80661 ATACATTATTA 1 ATAAATTAATA 80672 ATAAA 1 ATAAA 80677 ATTACACATA Statistics Matches: 13, Mismatches: 3, Indels: 0 0.81 0.19 0.00 Matches are distributed among these distances: 11 13 1.00 ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37 Consensus pattern (11 bp): ATAAATTAATA Left flanking sequence: Indices 80150 -- 80649 CTAGTATTTAATTATTGAATATATAAATATATATAATATAATATAATATAATATAATATAATATA ATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATA ATATAATATAAAATATGTAATCGTAATTCATTTCTATTAATTTTTTTTTTTAGAACCCTACATAA TATAAATATATTTATTTACAGTTGGGAATTATATTTATTATATTTTTAGATTTATAAGAAAATTA TTAATTACATATATTAATAATTTCTTTTTTTAAAAAAAAACCATATGTATAATAGTAAAAATAGA AATGTATTTTTAAGGAAATTATTTAAATTATGTTTTTTATTTTAATCTTTCTTTCTTATGTGTAT AATGTAAAAAAACTTAATTTTTTTTTTTTTTTATTTATAAATATAAAATATTTTTTTGTACTAGG ATCTTTTAATTATTTTATATTTATTATTTTTCATAAAATATATGT Right flanking sequence: Indices 80677 -- 81176 ATTACACATAAAAATATTTTCCTTTTTTTTTTTTTTTTTTCTTTTTGTTGAGAAAAATAAATGTA TATTTAATAAGAATGACCTTAATTCATATATATTAATAATACATATATATATATATATATATATA TATATCTTAATAAATAAATAATTTCCAAGAGTGGTATCAATTTTCTATTAAGCTATTATGTTGTA ATAAATATTTACATAATATTTTTATAATAAAATAAATTAGTTCATATTTTATATTAATAATTTTA TATGAAAAATATAAGTCTTACATGGAACATATATAATAATAAAAAATATGTATAAATATATATAA GTATATATATATATATAAATAATTAATTAATAATATAATAAAAAAAAGAAAGAAAAAACAAAAAA ATCGGATTTAAAACAGGAACAAAAAAACTTTTTTTTAATTTCGCATATTAATTATAAATTATGCA TACTATTTATAGACTTTTTCCATAATATATATACATTTCAATAAT Found at i:80891 original size:11 final size:11 Alignment explanation
Indices: 80875--80900 Score: 38 Period size: 11 Copynumber: 2.4 Consensus size: 11 80865 TGTTGTAATA 80875 AATATTTACAT 1 AATATTTACAT ** 80886 AATATTTTTAT 1 AATATTTACAT 80897 AATA 1 AATA 80901 AAATAAATTA Statistics Matches: 13, Mismatches: 2, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 11 13 1.00 ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50 Consensus pattern (11 bp): AATATTTACAT Left flanking sequence: Indices 80375 -- 80874 ATATTTATTATATTTTTAGATTTATAAGAAAATTATTAATTACATATATTAATAATTTCTTTTTT TAAAAAAAAACCATATGTATAATAGTAAAAATAGAAATGTATTTTTAAGGAAATTATTTAAATTA TGTTTTTTATTTTAATCTTTCTTTCTTATGTGTATAATGTAAAAAAACTTAATTTTTTTTTTTTT TTATTTATAAATATAAAATATTTTTTTGTACTAGGATCTTTTAATTATTTTATATTTATTATTTT TCATAAAATATATGTATAAATTAATAATACATTATTAATAAAATTACACATAAAAATATTTTCCT TTTTTTTTTTTTTTTTTCTTTTTGTTGAGAAAAATAAATGTATATTTAATAAGAATGACCTTAAT TCATATATATTAATAATACATATATATATATATATATATATATATATCTTAATAAATAAATAATT TCCAAGAGTGGTATCAATTTTCTATTAAGCTATTATGTTGTAATA Right flanking sequence: Indices 80901 -- 81400 AAATAAATTAGTTCATATTTTATATTAATAATTTTATATGAAAAATATAAGTCTTACATGGAACA TATATAATAATAAAAAATATGTATAAATATATATAAGTATATATATATATATAAATAATTAATTA ATAATATAATAAAAAAAAGAAAGAAAAAACAAAAAAATCGGATTTAAAACAGGAACAAAAAAACT TTTTTTTAATTTCGCATATTAATTATAAATTATGCATACTATTTATAGACTTTTTCCATAATATA TATACATTTCAATAATTATACAAGAAAATGTGCATTATATTAATAATAGTAATGCACAAATAAAT AAAAATATAATAATAATCAACAAAACAACATACATAAAACAATTAATTATTTATATCACTAAACA ATATTCATCATTTTTAATTATATAAATTAAGTACACAATATGATGAAATAATAAAATAAAGGAAA TATATATATATATATATATATATATATATATATATATATATTTAT Found at i:81059 original size:11 final size:11 Alignment explanation
Indices: 81041--81067 Score: 40 Period size: 11 Copynumber: 2.5 Consensus size: 11 81031 ATAATATAAT * 81041 AAAAAAAAGAA 1 AAAAAAAACAA * 81052 AGAAAAAACAA 1 AAAAAAAACAA 81063 AAAAA 1 AAAAA 81068 TCGGATTTAA Statistics Matches: 13, Mismatches: 3, Indels: 0 0.81 0.19 0.00 Matches are distributed among these distances: 11 13 1.00 ACGTcount: A:0.89, C:0.04, G:0.07, T:0.00 Consensus pattern (11 bp): AAAAAAAACAA Left flanking sequence: Indices 80541 -- 81040 ATGTAAAAAAACTTAATTTTTTTTTTTTTTTATTTATAAATATAAAATATTTTTTTGTACTAGGA TCTTTTAATTATTTTATATTTATTATTTTTCATAAAATATATGTATAAATTAATAATACATTATT AATAAAATTACACATAAAAATATTTTCCTTTTTTTTTTTTTTTTTTCTTTTTGTTGAGAAAAATA AATGTATATTTAATAAGAATGACCTTAATTCATATATATTAATAATACATATATATATATATATA TATATATATATCTTAATAAATAAATAATTTCCAAGAGTGGTATCAATTTTCTATTAAGCTATTAT GTTGTAATAAATATTTACATAATATTTTTATAATAAAATAAATTAGTTCATATTTTATATTAATA ATTTTATATGAAAAATATAAGTCTTACATGGAACATATATAATAATAAAAAATATGTATAAATAT ATATAAGTATATATATATATATAAATAATTAATTAATAATATAAT Right flanking sequence: Indices 81068 -- 81567 TCGGATTTAAAACAGGAACAAAAAAACTTTTTTTTAATTTCGCATATTAATTATAAATTATGCAT ACTATTTATAGACTTTTTCCATAATATATATACATTTCAATAATTATACAAGAAAATGTGCATTA TATTAATAATAGTAATGCACAAATAAATAAAAATATAATAATAATCAACAAAACAACATACATAA AACAATTAATTATTTATATCACTAAACAATATTCATCATTTTTAATTATATAAATTAAGTACACA ATATGATGAAATAATAAAATAAAGGAAATATATATATATATATATATATATATATATATATATAT ATATTTATTTATTTATTTATTATTCATATTATTCGTTTTGGTTTTATTTGAGATATCTACATATT ATAAGCTCTTGCCTTTTCCATAATTTCAATTATATCCTTTTCACGTATTTCCTTTTTACTCTTAA CATTTAATGACCATTTCTGCATTAATTTTCCTAGAATTTGTAATG Found at i:84606 original size:14 final size:14 Alignment explanation
Indices: 84565--84606 Score: 56 Period size: 14 Copynumber: 3.0 Consensus size: 14 84555 AAAAAAAAGC * 84565 AAACATATAAATAA 1 AAACATATAAATAT * 84579 AAACACATAAATAT 1 AAACATATAAATAT * * 84593 AAATATATATATAT 1 AAACATATAAATAT 84607 CTAATTAGAT Statistics Matches: 23, Mismatches: 5, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 14 23 1.00 ACGTcount: A:0.64, C:0.07, G:0.00, T:0.29 Consensus pattern (14 bp): AAACATATAAATAT Left flanking sequence: Indices 84065 -- 84564 TATATAGATAGATATACGTATTAACATATATATAGATAGATATATCTATTAATATATAGATAGAT ATATGTATTTATATATATATATATATATATATATATATTTATTTATTTATTTATTTATATTTAAT TATTTATTCGTTAAAATATATACTACGTATATTTATTAAATTACCAATAGTATAAAATAACATAT TGCAATAAAGTATATGATTGTACTTATATAAATTGGAGAATTCAAAAAATTATGTTCATTTCTTA TATTTTTTTTCTCTTTTTTTTTGTTATAATGCACATGTGCGCCATATGTATAATCCTCTTTTACA TTATTGTTGATATCCAAAAGAATTCTTAATAAACTACGATATGATTTATTAAAAAATTGCATATT TTATTAATTTTAACATATAAAACGAATAAAAAATATATATTATTTATTTTTCTATTATAATTACT ATTTTTTTAAAATAATTTCTCCATATTTTACAAATAAAAAAAAGC Right flanking sequence: Indices 84607 -- 85106 CTAATTAGATAATTCAAAAAAAAAAAATAAATAAAAATAAGAAATTCATAAATAAAATATAATCT ACAAAGAATTTCAAATTGTAAACATACTGAATATATATATATATATATTTATATTTTTTTTTTTT TTTTTATTTAAATAAATAAATAAAATATATACACTTAAGAATTAATTAAATAATAAATTGTTAAT ACAAATAATAAACATATAGAAATATATATATTATTTTCCATATATTCCTATATTTCTCTTTATTA ATAAGTGTATAACAGTTGTTCTTTTTTGTTTTCCTTTTTTTTTAACATAAAAATTATGTATATAA TATACATAAATATACTATTATGCTTTTTTCATGTGAAAAAATACAATTTGTATTTACAACTAATT TCCTCCCTTTTAAGAAAAAAAAAATATATATATAATTTTATATATAAATAAAATATTTAATATAT ATATATATTATCATATTTTTTTCTTTTATTTTTTAGAAACGTTAC Found at i:84651 original size:13 final size:13 Alignment explanation
Indices: 84622--84651 Score: 39 Period size: 13 Copynumber: 2.3 Consensus size: 13 84612 TAGATAATTC * * 84622 AAAAAAAAAAAAT 1 AAATAAAAAAAAG * 84635 AAATAAAAATAAG 1 AAATAAAAAAAAG 84648 AAAT 1 AAAT 84652 TCATAAATAA Statistics Matches: 14, Mismatches: 3, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 13 14 1.00 ACGTcount: A:0.83, C:0.00, G:0.03, T:0.13 Consensus pattern (13 bp): AAATAAAAAAAAG Left flanking sequence: Indices 84122 -- 84621 AGATAGATATATGTATTTATATATATATATATATATATATATATATTTATTTATTTATTTATTTA TATTTAATTATTTATTCGTTAAAATATATACTACGTATATTTATTAAATTACCAATAGTATAAAA TAACATATTGCAATAAAGTATATGATTGTACTTATATAAATTGGAGAATTCAAAAAATTATGTTC ATTTCTTATATTTTTTTTCTCTTTTTTTTTGTTATAATGCACATGTGCGCCATATGTATAATCCT CTTTTACATTATTGTTGATATCCAAAAGAATTCTTAATAAACTACGATATGATTTATTAAAAAAT TGCATATTTTATTAATTTTAACATATAAAACGAATAAAAAATATATATTATTTATTTTTCTATTA TAATTACTATTTTTTTAAAATAATTTCTCCATATTTTACAAATAAAAAAAAGCAAACATATAAAT AAAAACACATAAATATAAATATATATATATCTAATTAGATAATTC Right flanking sequence: Indices 84652 -- 85151 TCATAAATAAAATATAATCTACAAAGAATTTCAAATTGTAAACATACTGAATATATATATATATA TATTTATATTTTTTTTTTTTTTTTTATTTAAATAAATAAATAAAATATATACACTTAAGAATTAA TTAAATAATAAATTGTTAATACAAATAATAAACATATAGAAATATATATATTATTTTCCATATAT TCCTATATTTCTCTTTATTAATAAGTGTATAACAGTTGTTCTTTTTTGTTTTCCTTTTTTTTTAA CATAAAAATTATGTATATAATATACATAAATATACTATTATGCTTTTTTCATGTGAAAAAATACA ATTTGTATTTACAACTAATTTCCTCCCTTTTAAGAAAAAAAAAATATATATATAATTTTATATAT AAATAAAATATTTAATATATATATATATTATCATATTTTTTTCTTTTATTTTTTAGAAACGTTAC AAGAATGATATTTTATTATTCTAAAAATATATTAATTTACATGTG Found at i:84657 original size:17 final size:16 Alignment explanation
Indices: 84617--84663 Score: 50 Period size: 17 Copynumber: 2.9 Consensus size: 16 84607 CTAATTAGAT 84617 AATTCA-AAAAAAAAA 1 AATTCATAAAAAAAAA ** * 84632 AATAAATAAAAATAAGA 1 AATTCATAAAAA-AAAA * 84649 AATTCATAAATAAAA 1 AATTCATAAAAAAAA 84664 TATAATCTAC Statistics Matches: 23, Mismatches: 7, Indels: 3 0.70 0.21 0.09 Matches are distributed among these distances: 15 4 0.17 16 7 0.30 17 12 0.52 ACGTcount: A:0.74, C:0.04, G:0.02, T:0.19 Consensus pattern (16 bp): AATTCATAAAAAAAAA Left flanking sequence: Indices 84117 -- 84616 TATATAGATAGATATATGTATTTATATATATATATATATATATATATATATTTATTTATTTATTT ATTTATATTTAATTATTTATTCGTTAAAATATATACTACGTATATTTATTAAATTACCAATAGTA TAAAATAACATATTGCAATAAAGTATATGATTGTACTTATATAAATTGGAGAATTCAAAAAATTA TGTTCATTTCTTATATTTTTTTTCTCTTTTTTTTTGTTATAATGCACATGTGCGCCATATGTATA ATCCTCTTTTACATTATTGTTGATATCCAAAAGAATTCTTAATAAACTACGATATGATTTATTAA AAAATTGCATATTTTATTAATTTTAACATATAAAACGAATAAAAAATATATATTATTTATTTTTC TATTATAATTACTATTTTTTTAAAATAATTTCTCCATATTTTACAAATAAAAAAAAGCAAACATA TAAATAAAAACACATAAATATAAATATATATATATCTAATTAGAT Right flanking sequence: Indices 84664 -- 85163 TATAATCTACAAAGAATTTCAAATTGTAAACATACTGAATATATATATATATATATTTATATTTT TTTTTTTTTTTTTATTTAAATAAATAAATAAAATATATACACTTAAGAATTAATTAAATAATAAA TTGTTAATACAAATAATAAACATATAGAAATATATATATTATTTTCCATATATTCCTATATTTCT CTTTATTAATAAGTGTATAACAGTTGTTCTTTTTTGTTTTCCTTTTTTTTTAACATAAAAATTAT GTATATAATATACATAAATATACTATTATGCTTTTTTCATGTGAAAAAATACAATTTGTATTTAC AACTAATTTCCTCCCTTTTAAGAAAAAAAAAATATATATATAATTTTATATATAAATAAAATATT TAATATATATATATATTATCATATTTTTTTCTTTTATTTTTTAGAAACGTTACAAGAATGATATT TTATTATTCTAAAAATATATTAATTTACATGTGCACAACATTAGG Found at i:85059 original size:20 final size:18 Alignment explanation
Indices: 85020--85066 Score: 62 Period size: 18 Copynumber: 2.5 Consensus size: 18 85010 GAAAAAAAAA * 85020 ATATATATATAATTTTAT 1 ATATATATAAAATTTTAT * 85038 ATATAAATAAAATATTTAAT 1 ATATATATAAAAT-TTT-AT 85058 ATATATATA 1 ATATATATA 85067 TATTATCATA Statistics Matches: 24, Mismatches: 3, Indels: 2 0.83 0.10 0.07 Matches are distributed among these distances: 18 11 0.46 19 3 0.12 20 10 0.42 ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47 Consensus pattern (18 bp): ATATATATAAAATTTTAT Left flanking sequence: Indices 84520 -- 85019 ATTTTTTTAAAATAATTTCTCCATATTTTACAAATAAAAAAAAGCAAACATATAAATAAAAACAC ATAAATATAAATATATATATATCTAATTAGATAATTCAAAAAAAAAAAATAAATAAAAATAAGAA ATTCATAAATAAAATATAATCTACAAAGAATTTCAAATTGTAAACATACTGAATATATATATATA TATATTTATATTTTTTTTTTTTTTTTTATTTAAATAAATAAATAAAATATATACACTTAAGAATT AATTAAATAATAAATTGTTAATACAAATAATAAACATATAGAAATATATATATTATTTTCCATAT ATTCCTATATTTCTCTTTATTAATAAGTGTATAACAGTTGTTCTTTTTTGTTTTCCTTTTTTTTT AACATAAAAATTATGTATATAATATACATAAATATACTATTATGCTTTTTTCATGTGAAAAAATA CAATTTGTATTTACAACTAATTTCCTCCCTTTTAAGAAAAAAAAA Right flanking sequence: Indices 85067 -- 85566 TATTATCATATTTTTTTCTTTTATTTTTTAGAAACGTTACAAGAATGATATTTTATTATTCTAAA AATATATTAATTTACATGTGCACAACATTAGGATCTATTTATATTTACATATTTTCCTTATTCTA ATTTTGTGAAAAAAAAAAAAAAAAAAAAGTATAAAATCAAAATGTAAAATATAATAAAAACATAT TTTTTTACCAAAAAAAAAAATAAAAAAAAACAATTTTAATTTTTATTTAATTTAATATTTTGTAT TTTACGTGTTTTCCTTTTTCTTTTTCTTTTTTTTTGTTTTTTTTTTTTTAAGAATATATGTATCT GTTCTATAGTTATATTTCTTATATTATCCAACTAGGTGATACTGGTTTTTGAAAAAGGAAAATAA CAAAAATCCTAACCCCCATTTTAGGAAATAATAATAATAACATATAGGAAGAAAGAGAAAAAATT TTTATACATTTATTTAAATAATACTCTAATTTAATTTATATATAT Found at i:85360 original size:16 final size:16 Alignment explanation
Indices: 85341--85375 Score: 56 Period size: 16 Copynumber: 2.2 Consensus size: 16 85331 CGTGTTTTCC 85341 TTTTTCTTTTTCTTTT 1 TTTTTCTTTTTCTTTT * * 85357 TTTTTGTTTTTTTTTT 1 TTTTTCTTTTTCTTTT 85373 TTT 1 TTT 85376 AAGAATATAT Statistics Matches: 17, Mismatches: 2, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 16 17 1.00 ACGTcount: A:0.00, C:0.06, G:0.03, T:0.91 Consensus pattern (16 bp): TTTTTCTTTTTCTTTT Left flanking sequence: Indices 84841 -- 85340 ATATATTCCTATATTTCTCTTTATTAATAAGTGTATAACAGTTGTTCTTTTTTGTTTTCCTTTTT TTTTAACATAAAAATTATGTATATAATATACATAAATATACTATTATGCTTTTTTCATGTGAAAA AATACAATTTGTATTTACAACTAATTTCCTCCCTTTTAAGAAAAAAAAAATATATATATAATTTT ATATATAAATAAAATATTTAATATATATATATATTATCATATTTTTTTCTTTTATTTTTTAGAAA CGTTACAAGAATGATATTTTATTATTCTAAAAATATATTAATTTACATGTGCACAACATTAGGAT CTATTTATATTTACATATTTTCCTTATTCTAATTTTGTGAAAAAAAAAAAAAAAAAAAAGTATAA AATCAAAATGTAAAATATAATAAAAACATATTTTTTTACCAAAAAAAAAAATAAAAAAAAACAAT TTTAATTTTTATTTAATTTAATATTTTGTATTTTACGTGTTTTCC Right flanking sequence: Indices 85376 -- 85875 AAGAATATATGTATCTGTTCTATAGTTATATTTCTTATATTATCCAACTAGGTGATACTGGTTTT TGAAAAAGGAAAATAACAAAAATCCTAACCCCCATTTTAGGAAATAATAATAATAACATATAGGA AGAAAGAGAAAAAATTTTTATACATTTATTTAAATAATACTCTAATTTAATTTATATATATATAT ATATATATATAATATTTTTTTTGGTTATTAAGAAAATTCGTTTATACCTTCTGTTATATATAAAT ATTATATATATATAAAATAATAACACTTTTTTCGAAATGTGAAAAAAAAACAAATTGAAATTTAT AAAATTTTAATATTATAAAATTATTTTATACTATAATATTAAATCAAAATAATATTAATTTTATT TTATTTTATCACTTATTTTTTAGTACGACATTTTATATGATTAAAAATATAAAATAAATTAAAAT AAATTAAAAAGGAAAACAACTAAGGTATAATATATAATAACACTT Found at i:85642 original size:13 final size:13 Alignment explanation
Indices: 85624--85649 Score: 45 Period size: 13 Copynumber: 2.0 Consensus size: 13 85614 ATACCTTCTG 85624 TTATATATAAATA 1 TTATATATAAATA * 85637 TTATATATATATA 1 TTATATATAAATA 85650 AAATAATAAC Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 13 12 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (13 bp): TTATATATAAATA Left flanking sequence: Indices 85124 -- 85623 ATTCTAAAAATATATTAATTTACATGTGCACAACATTAGGATCTATTTATATTTACATATTTTCC TTATTCTAATTTTGTGAAAAAAAAAAAAAAAAAAAAGTATAAAATCAAAATGTAAAATATAATAA AAACATATTTTTTTACCAAAAAAAAAAATAAAAAAAAACAATTTTAATTTTTATTTAATTTAATA TTTTGTATTTTACGTGTTTTCCTTTTTCTTTTTCTTTTTTTTTGTTTTTTTTTTTTTAAGAATAT ATGTATCTGTTCTATAGTTATATTTCTTATATTATCCAACTAGGTGATACTGGTTTTTGAAAAAG GAAAATAACAAAAATCCTAACCCCCATTTTAGGAAATAATAATAATAACATATAGGAAGAAAGAG AAAAAATTTTTATACATTTATTTAAATAATACTCTAATTTAATTTATATATATATATATATATAT ATAATATTTTTTTTGGTTATTAAGAAAATTCGTTTATACCTTCTG Right flanking sequence: Indices 85650 -- 86149 AAATAATAACACTTTTTTCGAAATGTGAAAAAAAAACAAATTGAAATTTATAAAATTTTAATATT ATAAAATTATTTTATACTATAATATTAAATCAAAATAATATTAATTTTATTTTATTTTATCACTT ATTTTTTAGTACGACATTTTATATGATTAAAAATATAAAATAAATTAAAATAAATTAAAAAGGAA AACAACTAAGGTATAATATATAATAACACTTAAATATATCTTTGCAAACATTTTTTTTTTTTTTT TTTTTTAATTAATCAAAAAAACATAATTCTAACAGATTTTGAAAAAAAAAAAAAAAAAAAAAAAG GAAAATATTAAAAAAAAATAAATAAAATAAAAGTATTCCTTGTGTGAATATATAAATTATATTAT TACATATTCAACAAATATATATATATATATATATATATATATATATATTATATATAATGAAATAA TTGTAATCACAAAATGATATACTTGTTCAAAATATCTATAATATT Found at i:85643 original size:11 final size:11 Alignment explanation
Indices: 85627--85648 Score: 37 Period size: 11 Copynumber: 2.0 Consensus size: 11 85617 CCTTCTGTTA 85627 TATATAAATAT 1 TATATAAATAT * 85638 TATATATATAT 1 TATATAAATAT 85649 AAAATAATAA Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 11 10 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (11 bp): TATATAAATAT Left flanking sequence: Indices 85127 -- 85626 CTAAAAATATATTAATTTACATGTGCACAACATTAGGATCTATTTATATTTACATATTTTCCTTA TTCTAATTTTGTGAAAAAAAAAAAAAAAAAAAAGTATAAAATCAAAATGTAAAATATAATAAAAA CATATTTTTTTACCAAAAAAAAAAATAAAAAAAAACAATTTTAATTTTTATTTAATTTAATATTT TGTATTTTACGTGTTTTCCTTTTTCTTTTTCTTTTTTTTTGTTTTTTTTTTTTTAAGAATATATG TATCTGTTCTATAGTTATATTTCTTATATTATCCAACTAGGTGATACTGGTTTTTGAAAAAGGAA AATAACAAAAATCCTAACCCCCATTTTAGGAAATAATAATAATAACATATAGGAAGAAAGAGAAA AAATTTTTATACATTTATTTAAATAATACTCTAATTTAATTTATATATATATATATATATATATA ATATTTTTTTTGGTTATTAAGAAAATTCGTTTATACCTTCTGTTA Right flanking sequence: Indices 85649 -- 86148 AAAATAATAACACTTTTTTCGAAATGTGAAAAAAAAACAAATTGAAATTTATAAAATTTTAATAT TATAAAATTATTTTATACTATAATATTAAATCAAAATAATATTAATTTTATTTTATTTTATCACT TATTTTTTAGTACGACATTTTATATGATTAAAAATATAAAATAAATTAAAATAAATTAAAAAGGA AAACAACTAAGGTATAATATATAATAACACTTAAATATATCTTTGCAAACATTTTTTTTTTTTTT TTTTTTTAATTAATCAAAAAAACATAATTCTAACAGATTTTGAAAAAAAAAAAAAAAAAAAAAAA GGAAAATATTAAAAAAAAATAAATAAAATAAAAGTATTCCTTGTGTGAATATATAAATTATATTA TTACATATTCAACAAATATATATATATATATATATATATATATATATATTATATATAATGAAATA ATTGTAATCACAAAATGATATACTTGTTCAAAATATCTATAATAT Found at i:85741 original size:18 final size:19 Alignment explanation
Indices: 85704--85741 Score: 55 Period size: 18 Copynumber: 2.1 Consensus size: 19 85694 AATTTATAAA * 85704 ATTTTAATATTATAAAATT 1 ATTTTAATACTATAAAATT * 85723 ATTTT-ATACTATAATATT 1 ATTTTAATACTATAAAATT 85741 A 1 A 85742 AATCAAAATA Statistics Matches: 17, Mismatches: 2, Indels: 1 0.85 0.10 0.05 Matches are distributed among these distances: 18 12 0.71 19 5 0.29 ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53 Consensus pattern (19 bp): ATTTTAATACTATAAAATT Left flanking sequence: Indices 85204 -- 85703 GAAAAAAAAAAAAAAAAAAAAGTATAAAATCAAAATGTAAAATATAATAAAAACATATTTTTTTA CCAAAAAAAAAAATAAAAAAAAACAATTTTAATTTTTATTTAATTTAATATTTTGTATTTTACGT GTTTTCCTTTTTCTTTTTCTTTTTTTTTGTTTTTTTTTTTTTAAGAATATATGTATCTGTTCTAT AGTTATATTTCTTATATTATCCAACTAGGTGATACTGGTTTTTGAAAAAGGAAAATAACAAAAAT CCTAACCCCCATTTTAGGAAATAATAATAATAACATATAGGAAGAAAGAGAAAAAATTTTTATAC ATTTATTTAAATAATACTCTAATTTAATTTATATATATATATATATATATATAATATTTTTTTTG GTTATTAAGAAAATTCGTTTATACCTTCTGTTATATATAAATATTATATATATATAAAATAATAA CACTTTTTTCGAAATGTGAAAAAAAAACAAATTGAAATTTATAAA Right flanking sequence: Indices 85742 -- 86241 AATCAAAATAATATTAATTTTATTTTATTTTATCACTTATTTTTTAGTACGACATTTTATATGAT TAAAAATATAAAATAAATTAAAATAAATTAAAAAGGAAAACAACTAAGGTATAATATATAATAAC ACTTAAATATATCTTTGCAAACATTTTTTTTTTTTTTTTTTTTTAATTAATCAAAAAAACATAAT TCTAACAGATTTTGAAAAAAAAAAAAAAAAAAAAAAAGGAAAATATTAAAAAAAAATAAATAAAA TAAAAGTATTCCTTGTGTGAATATATAAATTATATTATTACATATTCAACAAATATATATATATA TATATATATATATATATATATTATATATAATGAAATAATTGTAATCACAAAATGATATACTTGTT CAAAATATCTATAATATTTAATACTGTAGTAATCACGAAATATATTTATATATATATTTATATAT TTATTTATGTATATTTTTAAAAGTACAGAATTTTCATATGAATAT Found at i:86011 original size:28 final size:28 Alignment explanation
Indices: 85956--86011 Score: 77 Period size: 28 Copynumber: 2.0 Consensus size: 28 85946 TTTTGAAAAA * 85956 AAAAAAAAAAAAAAAAAAGGAAAATATT 1 AAAAAAAAAAAAAAAAAAGAAAAATATT * * * * 85984 AAAAAAAAATAAATAAAATAAAAGTATT 1 AAAAAAAAAAAAAAAAAAGAAAAATATT 86012 CCTTGTGTGA Statistics Matches: 23, Mismatches: 5, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 28 23 1.00 ACGTcount: A:0.79, C:0.00, G:0.05, T:0.16 Consensus pattern (28 bp): AAAAAAAAAAAAAAAAAAGAAAAATATT Left flanking sequence: Indices 85456 -- 85955 ACAAAAATCCTAACCCCCATTTTAGGAAATAATAATAATAACATATAGGAAGAAAGAGAAAAAAT TTTTATACATTTATTTAAATAATACTCTAATTTAATTTATATATATATATATATATATATAATAT TTTTTTTGGTTATTAAGAAAATTCGTTTATACCTTCTGTTATATATAAATATTATATATATATAA AATAATAACACTTTTTTCGAAATGTGAAAAAAAAACAAATTGAAATTTATAAAATTTTAATATTA TAAAATTATTTTATACTATAATATTAAATCAAAATAATATTAATTTTATTTTATTTTATCACTTA TTTTTTAGTACGACATTTTATATGATTAAAAATATAAAATAAATTAAAATAAATTAAAAAGGAAA ACAACTAAGGTATAATATATAATAACACTTAAATATATCTTTGCAAACATTTTTTTTTTTTTTTT TTTTTAATTAATCAAAAAAACATAATTCTAACAGATTTTGAAAAA Right flanking sequence: Indices 86012 -- 86511 CCTTGTGTGAATATATAAATTATATTATTACATATTCAACAAATATATATATATATATATATATA TATATATATATTATATATAATGAAATAATTGTAATCACAAAATGATATACTTGTTCAAAATATCT ATAATATTTAATACTGTAGTAATCACGAAATATATTTATATATATATTTATATATTTATTTATGT ATATTTTTAAAAGTACAGAATTTTCATATGAATATTATAATATATGAAATTAATCTTTTTAATTT CATTCTTTTTATATATAAATATTTAATCCTATGAATAGTAATTTTAAATATATCTGTCATTTCTA GGTTTCATATTTAATGTATTATCGTTATCATATAATATAAAAATATACTTTATTTCAAATATCTC ATTCAAAAATACAAATACACATTTTTAATAATAAACAAAAATTGTCCTGTCCATGAATAAATAAT ATATGACAAAAATGTTAGGCATTATATTCATATCATTTTACAATT Found at i:86188 original size:12 final size:12 Alignment explanation
Indices: 86171--86215 Score: 69 Period size: 12 Copynumber: 3.8 Consensus size: 12 86161 TAATCACGAA 86171 ATATATTTATAT 1 ATATATTTATAT 86183 ATATATTTATAT 1 ATATATTTATAT * * 86195 ATTTATTTATGT 1 ATATATTTATAT * 86207 ATATTTTTA 1 ATATATTTA 86216 AAAGTACAGA Statistics Matches: 29, Mismatches: 4, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 12 29 1.00 ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62 Consensus pattern (12 bp): ATATATTTATAT Left flanking sequence: Indices 85671 -- 86170 AATGTGAAAAAAAAACAAATTGAAATTTATAAAATTTTAATATTATAAAATTATTTTATACTATA ATATTAAATCAAAATAATATTAATTTTATTTTATTTTATCACTTATTTTTTAGTACGACATTTTA TATGATTAAAAATATAAAATAAATTAAAATAAATTAAAAAGGAAAACAACTAAGGTATAATATAT AATAACACTTAAATATATCTTTGCAAACATTTTTTTTTTTTTTTTTTTTTAATTAATCAAAAAAA CATAATTCTAACAGATTTTGAAAAAAAAAAAAAAAAAAAAAAAGGAAAATATTAAAAAAAAATAA ATAAAATAAAAGTATTCCTTGTGTGAATATATAAATTATATTATTACATATTCAACAAATATATA TATATATATATATATATATATATATATTATATATAATGAAATAATTGTAATCACAAAATGATATA CTTGTTCAAAATATCTATAATATTTAATACTGTAGTAATCACGAA Right flanking sequence: Indices 86216 -- 86715 AAAGTACAGAATTTTCATATGAATATTATAATATATGAAATTAATCTTTTTAATTTCATTCTTTT TATATATAAATATTTAATCCTATGAATAGTAATTTTAAATATATCTGTCATTTCTAGGTTTCATA TTTAATGTATTATCGTTATCATATAATATAAAAATATACTTTATTTCAAATATCTCATTCAAAAA TACAAATACACATTTTTAATAATAAACAAAAATTGTCCTGTCCATGAATAAATAATATATGACAA AAATGTTAGGCATTATATTCATATCATTTTACAATTATATATATATATATATATATATATATATT TTTCTTTTTTTTTTTCTTAATACTTGTGAAGTTCTCAAAAAAAAAAATTTCATTTCACTATTAAA AATATTCTATATAATCCAAATTTTTACATTTTACAAGTATTATTTTTCAAATAGTTAAATAATGT CTTTCATTAAATAAGTATTTTATAATATTCATTAGTTTTTTTTTA Found at i:88278 original size:13 final size:14 Alignment explanation
Indices: 88262--88336 Score: 58 Period size: 14 Copynumber: 5.2 Consensus size: 14 88252 TTTTTTATTT 88262 TATATTA-AAAAAA 1 TATATTATAAAAAA * 88275 TATATTATAATAAA 1 TATATTATAAAAAA * * * 88289 TAAATT-TATATATA 1 TATATTATA-AAAAA * * 88303 TATATATATATATATA 1 TATAT-TATA-AAAAA 88319 TATATTATAAATAAA 1 TATATTATAAA-AAA 88334 TAT 1 TAT 88337 TTCCAATAAA Statistics Matches: 51, Mismatches: 6, Indels: 8 0.78 0.09 0.12 Matches are distributed among these distances: 13 9 0.18 14 19 0.37 15 10 0.20 16 13 0.25 ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44 Consensus pattern (14 bp): TATATTATAAAAAA Left flanking sequence: Indices 87762 -- 88261 AACAGAAAAACAGAAAAACAGAAAAACAGAAAAACAGAAAAACAGAAAAACAGAAAAACAGAAAA ACAGAAAAACAGAAAAAGTTAAATGAATTATAAGATAATAAAATGATATAAAATATATATATCAC GAAATTTCCTTCTTTTTTATTTTTCACCAAATATTTTATTAAAATTAATATGATTACTTTACTTT TGGGAAAAAAAAAAAAAAAAAAAATTCGTACCATATAACACAATTATTTATATATATTTCTATAT ATTTTATACATATTTATTGTCCTTATAACAATTTATTATTTTTTTTTTTTTTTTTTTATTGTTAC TCCTATAATTAAAAAATAAAATTCTTAGATGAAATTTGATACAAATATAGAATCAAAATAAAATA GAACATCTGTGCATGTTTAATTTATTCAATTTTTTTAATTCATATTATTATTAAAATAAAATTAT GGTTAATCGCGCGAATATCTTTTTTTTTTTTTTTTTTTTTTATTT Right flanking sequence: Indices 88337 -- 88836 TTCCAATAAATTATTTTTAACATAATACATTATAAATATTATAAAAAAGAATGTAAAATAAAAGG AAAAATCATATTTTATATTTATTATTTTATGATGTATTATTATATATATTTATAATATATATATT TGATGGATTTATTATAAATATATAATATATAAAAATGTCCTACAATAATAATAAATATTTTAATT AAAACTCCGCAACATAAAAAAAAGAACTAAAAGTACAACCATAAAATATTATATGATATAAATAT ATATAATTATATATATAATATATTCAATATATTTTTATATTTAAATTTTTATATATATTTAAAAT ATTTAAATATAATATATATATAAAGAAAGAAGAGATAAAAAAAAATAAATAAGCATATAAAAGAA AAACAAAATATTCTAAAACAAACGAAAAAAAAAAATATATATTTATTATATAATATATTATATTT ATATAACTTATATATAACATTATTTATATATAAATATATTATTAT Found at i:88288 original size:18 final size:19 Alignment explanation
Indices: 88262--88336 Score: 67 Period size: 20 Copynumber: 3.8 Consensus size: 19 88252 TTTTTTATTT * 88262 TATATTAAAAAAATATAT- 1 TATAATAAAAAAATATATA * 88280 TATAATAAATAAATTTATATA 1 TATAATAAA-AAA-ATATATA * * * 88301 TATATATATATATATATATA 1 TATA-ATAAAAAAATATATA * * 88321 TATTATAAATAAATAT 1 TATAATAAAAAAATAT 88337 TTCCAATAAA Statistics Matches: 44, Mismatches: 9, Indels: 7 0.73 0.15 0.12 Matches are distributed among these distances: 18 8 0.18 19 13 0.30 20 14 0.32 21 5 0.11 22 4 0.09 ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44 Consensus pattern (19 bp): TATAATAAAAAAATATATA Left flanking sequence: Indices 87762 -- 88261 AACAGAAAAACAGAAAAACAGAAAAACAGAAAAACAGAAAAACAGAAAAACAGAAAAACAGAAAA ACAGAAAAACAGAAAAAGTTAAATGAATTATAAGATAATAAAATGATATAAAATATATATATCAC GAAATTTCCTTCTTTTTTATTTTTCACCAAATATTTTATTAAAATTAATATGATTACTTTACTTT TGGGAAAAAAAAAAAAAAAAAAAATTCGTACCATATAACACAATTATTTATATATATTTCTATAT ATTTTATACATATTTATTGTCCTTATAACAATTTATTATTTTTTTTTTTTTTTTTTTATTGTTAC TCCTATAATTAAAAAATAAAATTCTTAGATGAAATTTGATACAAATATAGAATCAAAATAAAATA GAACATCTGTGCATGTTTAATTTATTCAATTTTTTTAATTCATATTATTATTAAAATAAAATTAT GGTTAATCGCGCGAATATCTTTTTTTTTTTTTTTTTTTTTTATTT Right flanking sequence: Indices 88337 -- 88836 TTCCAATAAATTATTTTTAACATAATACATTATAAATATTATAAAAAAGAATGTAAAATAAAAGG AAAAATCATATTTTATATTTATTATTTTATGATGTATTATTATATATATTTATAATATATATATT TGATGGATTTATTATAAATATATAATATATAAAAATGTCCTACAATAATAATAAATATTTTAATT AAAACTCCGCAACATAAAAAAAAGAACTAAAAGTACAACCATAAAATATTATATGATATAAATAT ATATAATTATATATATAATATATTCAATATATTTTTATATTTAAATTTTTATATATATTTAAAAT ATTTAAATATAATATATATATAAAGAAAGAAGAGATAAAAAAAAATAAATAAGCATATAAAAGAA AAACAAAATATTCTAAAACAAACGAAAAAAAAAAATATATATTTATTATATAATATATTATATTT ATATAACTTATATATAACATTATTTATATATAAATATATTATTAT Found at i:88441 original size:15 final size:14 Alignment explanation
Indices: 88410--88466 Score: 56 Period size: 14 Copynumber: 4.1 Consensus size: 14 88400 GGAAAAATCA * 88410 TATTTTATATTTAT 1 TATTTTATATGTAT 88424 TATTTTATGATGTAT 1 TATTTTAT-ATGTAT * * 88439 TATTATATATAT-T 1 TATTTTATATGTAT ** * 88452 TATAATATATATAT 1 TATTTTATATGTAT 88466 T 1 T 88467 TGATGGATTT Statistics Matches: 37, Mismatches: 4, Indels: 4 0.82 0.09 0.09 Matches are distributed among these distances: 13 12 0.32 14 13 0.35 15 12 0.32 ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61 Consensus pattern (14 bp): TATTTTATATGTAT Left flanking sequence: Indices 87910 -- 88409 ATTTTTCACCAAATATTTTATTAAAATTAATATGATTACTTTACTTTTGGGAAAAAAAAAAAAAA AAAAAATTCGTACCATATAACACAATTATTTATATATATTTCTATATATTTTATACATATTTATT GTCCTTATAACAATTTATTATTTTTTTTTTTTTTTTTTTATTGTTACTCCTATAATTAAAAAATA AAATTCTTAGATGAAATTTGATACAAATATAGAATCAAAATAAAATAGAACATCTGTGCATGTTT AATTTATTCAATTTTTTTAATTCATATTATTATTAAAATAAAATTATGGTTAATCGCGCGAATAT CTTTTTTTTTTTTTTTTTTTTTTATTTTATATTAAAAAAATATATTATAATAAATAAATTTATAT ATATATATATATATATATATATATTATAAATAAATATTTCCAATAAATTATTTTTAACATAATAC ATTATAAATATTATAAAAAAGAATGTAAAATAAAAGGAAAAATCA Right flanking sequence: Indices 88467 -- 88966 TGATGGATTTATTATAAATATATAATATATAAAAATGTCCTACAATAATAATAAATATTTTAATT AAAACTCCGCAACATAAAAAAAAGAACTAAAAGTACAACCATAAAATATTATATGATATAAATAT ATATAATTATATATATAATATATTCAATATATTTTTATATTTAAATTTTTATATATATTTAAAAT ATTTAAATATAATATATATATAAAGAAAGAAGAGATAAAAAAAAATAAATAAGCATATAAAAGAA AAACAAAATATTCTAAAACAAACGAAAAAAAAAAATATATATTTATTATATAATATATTATATTT ATATAACTTATATATAACATTATTTATATATAAATATATTATTATTATATAAGAAGAATTATATA TTTAAAACGTATTCTTATTTATATATTTATATATTTTACTAATATATAATATAATAAGCTAGCTC TTTTTTTTCTTTTTCTTTTTCAATTTTGTATTCTTTCTATATATT Found at i:88466 original size:24 final size:24 Alignment explanation
Indices: 88415--88497 Score: 75 Period size: 24 Copynumber: 3.6 Consensus size: 24 88405 AATCATATTT * * 88415 TATAT-TTAT-TAT-TTTATGATG 1 TATATATTATATATATTTATAATA 88436 TAT-TATTATATATATTTATAATA 1 TATATATTATATATATTTATAATA ** ** * 88459 TATATATTTGATGGATTTATTATA 1 TATATATTATATATATTTATAATA * * 88483 AATATATAATATATA 1 TATATATTATATATA 88498 AAAATGTCCT Statistics Matches: 45, Mismatches: 13, Indels: 5 0.71 0.21 0.08 Matches are distributed among these distances: 20 1 0.02 21 7 0.16 22 3 0.07 23 10 0.22 24 24 0.53 ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54 Consensus pattern (24 bp): TATATATTATATATATTTATAATA Left flanking sequence: Indices 87915 -- 88414 TCACCAAATATTTTATTAAAATTAATATGATTACTTTACTTTTGGGAAAAAAAAAAAAAAAAAAA ATTCGTACCATATAACACAATTATTTATATATATTTCTATATATTTTATACATATTTATTGTCCT TATAACAATTTATTATTTTTTTTTTTTTTTTTTTATTGTTACTCCTATAATTAAAAAATAAAATT CTTAGATGAAATTTGATACAAATATAGAATCAAAATAAAATAGAACATCTGTGCATGTTTAATTT ATTCAATTTTTTTAATTCATATTATTATTAAAATAAAATTATGGTTAATCGCGCGAATATCTTTT TTTTTTTTTTTTTTTTTTATTTTATATTAAAAAAATATATTATAATAAATAAATTTATATATATA TATATATATATATATATATTATAAATAAATATTTCCAATAAATTATTTTTAACATAATACATTAT AAATATTATAAAAAAGAATGTAAAATAAAAGGAAAAATCATATTT Right flanking sequence: Indices 88498 -- 88997 AAAATGTCCTACAATAATAATAAATATTTTAATTAAAACTCCGCAACATAAAAAAAAGAACTAAA AGTACAACCATAAAATATTATATGATATAAATATATATAATTATATATATAATATATTCAATATA TTTTTATATTTAAATTTTTATATATATTTAAAATATTTAAATATAATATATATATAAAGAAAGAA GAGATAAAAAAAAATAAATAAGCATATAAAAGAAAAACAAAATATTCTAAAACAAACGAAAAAAA AAAATATATATTTATTATATAATATATTATATTTATATAACTTATATATAACATTATTTATATAT AAATATATTATTATTATATAAGAAGAATTATATATTTAAAACGTATTCTTATTTATATATTTATA TATTTTACTAATATATAATATAATAAGCTAGCTCTTTTTTTTCTTTTTCTTTTTCAATTTTGTAT TCTTTCTATATATTAAAAATCAACATATTTATTTTATATATATTA Found at i:88467 original size:15 final size:15 Alignment explanation
Indices: 88415--88467 Score: 53 Period size: 15 Copynumber: 3.5 Consensus size: 15 88405 AATCATATTT * * 88415 TATATTTATTAT-TT 1 TATATTTATAATATA * * 88429 TATGATGTATTATTATA 1 TAT-ATTTA-TAATATA 88446 TATATTTATAATATA 1 TATATTTATAATATA 88461 TATATTT 1 TATATTT 88468 GATGGATTTA Statistics Matches: 30, Mismatches: 6, Indels: 5 0.73 0.15 0.12 Matches are distributed among these distances: 14 3 0.10 15 17 0.57 16 6 0.20 17 4 0.13 ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60 Consensus pattern (15 bp): TATATTTATAATATA Left flanking sequence: Indices 87915 -- 88414 TCACCAAATATTTTATTAAAATTAATATGATTACTTTACTTTTGGGAAAAAAAAAAAAAAAAAAA ATTCGTACCATATAACACAATTATTTATATATATTTCTATATATTTTATACATATTTATTGTCCT TATAACAATTTATTATTTTTTTTTTTTTTTTTTTATTGTTACTCCTATAATTAAAAAATAAAATT CTTAGATGAAATTTGATACAAATATAGAATCAAAATAAAATAGAACATCTGTGCATGTTTAATTT ATTCAATTTTTTTAATTCATATTATTATTAAAATAAAATTATGGTTAATCGCGCGAATATCTTTT TTTTTTTTTTTTTTTTTTATTTTATATTAAAAAAATATATTATAATAAATAAATTTATATATATA TATATATATATATATATATTATAAATAAATATTTCCAATAAATTATTTTTAACATAATACATTAT AAATATTATAAAAAAGAATGTAAAATAAAAGGAAAAATCATATTT Right flanking sequence: Indices 88468 -- 88967 GATGGATTTATTATAAATATATAATATATAAAAATGTCCTACAATAATAATAAATATTTTAATTA AAACTCCGCAACATAAAAAAAAGAACTAAAAGTACAACCATAAAATATTATATGATATAAATATA TATAATTATATATATAATATATTCAATATATTTTTATATTTAAATTTTTATATATATTTAAAATA TTTAAATATAATATATATATAAAGAAAGAAGAGATAAAAAAAAATAAATAAGCATATAAAAGAAA AACAAAATATTCTAAAACAAACGAAAAAAAAAAATATATATTTATTATATAATATATTATATTTA TATAACTTATATATAACATTATTTATATATAAATATATTATTATTATATAAGAAGAATTATATAT TTAAAACGTATTCTTATTTATATATTTATATATTTTACTAATATATAATATAATAAGCTAGCTCT TTTTTTTCTTTTTCTTTTTCAATTTTGTATTCTTTCTATATATTA Found at i:88635 original size:26 final size:26 Alignment explanation
Indices: 88595--88680 Score: 84 Period size: 26 Copynumber: 3.3 Consensus size: 26 88585 TGATATAAAT * 88595 ATATATAATTATATATATAATATATTC 1 ATATATATTTATATATATAA-ATATTC * * * * 88622 A-ATATATTTTTATATTTAAATTTTT 1 ATATATATTTATATATATAAATATTC * * * 88647 ATATATATTTAAAATATTTAAATA-TA 1 ATATATATTT-ATATATATAAATATTC 88673 ATATATAT 1 ATATATAT 88681 ATAAAGAAAG Statistics Matches: 48, Mismatches: 9, Indels: 5 0.77 0.15 0.08 Matches are distributed among these distances: 25 5 0.10 26 32 0.67 27 11 0.23 ACGTcount: A:0.47, C:0.01, G:0.00, T:0.52 Consensus pattern (26 bp): ATATATATTTATATATATAAATATTC Left flanking sequence: Indices 88095 -- 88594 TTAAAAAATAAAATTCTTAGATGAAATTTGATACAAATATAGAATCAAAATAAAATAGAACATCT GTGCATGTTTAATTTATTCAATTTTTTTAATTCATATTATTATTAAAATAAAATTATGGTTAATC GCGCGAATATCTTTTTTTTTTTTTTTTTTTTTTATTTTATATTAAAAAAATATATTATAATAAAT AAATTTATATATATATATATATATATATATATATTATAAATAAATATTTCCAATAAATTATTTTT AACATAATACATTATAAATATTATAAAAAAGAATGTAAAATAAAAGGAAAAATCATATTTTATAT TTATTATTTTATGATGTATTATTATATATATTTATAATATATATATTTGATGGATTTATTATAAA TATATAATATATAAAAATGTCCTACAATAATAATAAATATTTTAATTAAAACTCCGCAACATAAA AAAAAGAACTAAAAGTACAACCATAAAATATTATATGATATAAAT Right flanking sequence: Indices 88681 -- 89180 ATAAAGAAAGAAGAGATAAAAAAAAATAAATAAGCATATAAAAGAAAAACAAAATATTCTAAAAC AAACGAAAAAAAAAAATATATATTTATTATATAATATATTATATTTATATAACTTATATATAACA TTATTTATATATAAATATATTATTATTATATAAGAAGAATTATATATTTAAAACGTATTCTTATT TATATATTTATATATTTTACTAATATATAATATAATAAGCTAGCTCTTTTTTTTCTTTTTCTTTT TCAATTTTGTATTCTTTCTATATATTAAAAATCAACATATTTATTTTATATATATTATATATAAA TAATATCTATAAACAATATTATAATATAATATAATAATAATAAATAAAAAATATTTTTGTCAAAA TCTCATAAATCCCAAAAATAAATAAAATAAATAATAATATAAAAAAATAATAATAACCAATAATA TAAAATAATACTTATATATTTTCTAATATAATAATATATTTTTAT Found at i:88803 original size:25 final size:23 Alignment explanation
Indices: 88764--88843 Score: 72 Period size: 21 Copynumber: 3.6 Consensus size: 23 88754 AAAAAAAATA 88764 TATATTTAT-T-ATATAATATAT 1 TATATTTATATAATATAATATAT ** * 88785 TATATTTATATAACTTATATATAA 1 TATATTTATATAATATA-ATATAT * 88809 CATTATTTATAT-ATA-AATATAT 1 TA-TATTTATATAATATAATATAT ** 88831 TATTATTATATAA 1 TATATTTATATAA 88844 GAAGAATTAT Statistics Matches: 44, Mismatches: 10, Indels: 9 0.70 0.16 0.14 Matches are distributed among these distances: 21 16 0.36 22 8 0.18 23 4 0.09 24 7 0.16 25 9 0.20 ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53 Consensus pattern (23 bp): TATATTTATATAATATAATATAT Left flanking sequence: Indices 88264 -- 88763 TATTAAAAAAATATATTATAATAAATAAATTTATATATATATATATATATATATATATATTATAA ATAAATATTTCCAATAAATTATTTTTAACATAATACATTATAAATATTATAAAAAAGAATGTAAA ATAAAAGGAAAAATCATATTTTATATTTATTATTTTATGATGTATTATTATATATATTTATAATA TATATATTTGATGGATTTATTATAAATATATAATATATAAAAATGTCCTACAATAATAATAAATA TTTTAATTAAAACTCCGCAACATAAAAAAAAGAACTAAAAGTACAACCATAAAATATTATATGAT ATAAATATATATAATTATATATATAATATATTCAATATATTTTTATATTTAAATTTTTATATATA TTTAAAATATTTAAATATAATATATATATAAAGAAAGAAGAGATAAAAAAAAATAAATAAGCATA TAAAAGAAAAACAAAATATTCTAAAACAAACGAAAAAAAAAAATA Right flanking sequence: Indices 88844 -- 89343 GAAGAATTATATATTTAAAACGTATTCTTATTTATATATTTATATATTTTACTAATATATAATAT AATAAGCTAGCTCTTTTTTTTCTTTTTCTTTTTCAATTTTGTATTCTTTCTATATATTAAAAATC AACATATTTATTTTATATATATTATATATAAATAATATCTATAAACAATATTATAATATAATATA ATAATAATAAATAAAAAATATTTTTGTCAAAATCTCATAAATCCCAAAAATAAATAAAATAAATA ATAATATAAAAAAATAATAATAACCAATAATATAAAATAATACTTATATATTTTCTAATATAATA ATATATTTTTATATTATGTAATATTATATATTGTATTCATTTCTTTTAATAAGTATTTTTTTATA GAATAAAGTTCATTAGAAATAATCTACTTTCGTAGTAATATATATTAAAAGAAAAATATTTATAT ATATTAATATAATAACAAATTTATATATATTTTATAATTTAAAAT Found at