TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: 97739973 P. falciparum 3D7 GENOMIC pfal_chr2 Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 947102 ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40 Found at i: i:610044 original size:21 final size:21 Alignment explanation
Indices: 610018--610060 Score: 79 Period size: 21 Copynumber: 2.0 Consensus size: 21 610008 AAAAAAAAAA * 610018 ATATATATATGTATATAATAT 1 ATATATATATATATATAATAT 610039 ATATATATATATATATAATAT 1 ATATATATATATATATAATAT 610060 A 1 A 610061 CCAATTTTTA Statistics Matches: 21, Mismatches: 1, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 21 21 1.00 ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47 Consensus pattern (21 bp): ATATATATATATATATAATAT Left flanking sequence: Indices 609518 -- 610017 TTTTTGGAATAACATATAAATGTCAATGTATATGTGTATATATATATATATATATATATATGTAT ATATTTTTTTTTCTTTTTCATATATTTATATGCGCCCATTTGTTTTTATCTATATATATATATAT TTATATATCCGAATTTCTTTATATTGTTATATTCCGATTTGATTATATATAAAATTTTTTTTAAT TCATAATTTTTTTTTTTTTTTTTTTCTTTTTTTTCATTTCCATGTGATTTATTTCAATCCGATAT TATTTATATGTTATATATATATTATTCTATAATATGATAAAAGGATATTTTTTTTTCTTATTTGT ATTTTTAGATTATAAATATAAAGATATTCTTATATATAGATTATATCTGCTTTTTTTTTTTTTTT TTTTTTTTTTTCTATTATTAATTTTTAAATTATCTACTTACGAATTTTTTAATTGTTGATATGGC CTTCATGAGTATATTATTATGCATGAAAGAAAAAAAAAAAAAAAA Right flanking sequence: Indices 610061 -- 610560 CCAATTTTTATTATCTTATATTTTACATGCACTATAAATGCATAGAATTTTTCTTTTTTTTTTTT TTGATTTCTTCTCCCCAAATTTTTGGTTATTTATATAATATACGTATTATAAATATGTACATATA ATATGTATATATTATAATGTGTAATTTTCCACATATATATATAAAATATATATATATATATATAT ATATTTTAATAATACTTGAACTTTTAAAATTAAATATATAAAAAGGAATCCAATTAATTTATGGT TATATTATTTGTTATTCACTAGAAAATTCTCTAGAATTTAATAAAACATATATAAATATAGAATA TATTATATATATATTATATTTTTTTTTTTTTTTCCCTATTACCACATAATAATATTAATCTCATA AAACCAAATATTCATAATTAAAGAACTATAATGCTTTTAATTAAAAATAATATATAAATAAAAAT ATAAAAAATAATATATAAATAAATATATTATTAATCAGAATTGTA Found at i:610195 original size:13 final size:13 Alignment explanation
Indices: 610177--610206 Score: 46 Period size: 13 Copynumber: 2.3 Consensus size: 13 610167 ACGTATTATA 610177 AATATGTACATAT 1 AATATGTACATAT * 610190 AATATGTATATAT 1 AATATGTACATAT * 610203 TATA 1 AATA 610207 ATGTGTAATT Statistics Matches: 15, Mismatches: 2, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 13 15 1.00 ACGTcount: A:0.47, C:0.03, G:0.07, T:0.43 Consensus pattern (13 bp): AATATGTACATAT Left flanking sequence: Indices 609677 -- 610176 TATTCCGATTTGATTATATATAAAATTTTTTTTAATTCATAATTTTTTTTTTTTTTTTTTTCTTT TTTTTCATTTCCATGTGATTTATTTCAATCCGATATTATTTATATGTTATATATATATTATTCTA TAATATGATAAAAGGATATTTTTTTTTCTTATTTGTATTTTTAGATTATAAATATAAAGATATTC TTATATATAGATTATATCTGCTTTTTTTTTTTTTTTTTTTTTTTTTTCTATTATTAATTTTTAAA TTATCTACTTACGAATTTTTTAATTGTTGATATGGCCTTCATGAGTATATTATTATGCATGAAAG AAAAAAAAAAAAAAAAATATATATATGTATATAATATATATATATATATATATAATATACCAATT TTTATTATCTTATATTTTACATGCACTATAAATGCATAGAATTTTTCTTTTTTTTTTTTTTGATT TCTTCTCCCCAAATTTTTGGTTATTTATATAATATACGTATTATA Right flanking sequence: Indices 610207 -- 610706 ATGTGTAATTTTCCACATATATATATAAAATATATATATATATATATATATATTTTAATAATACT TGAACTTTTAAAATTAAATATATAAAAAGGAATCCAATTAATTTATGGTTATATTATTTGTTATT CACTAGAAAATTCTCTAGAATTTAATAAAACATATATAAATATAGAATATATTATATATATATTA TATTTTTTTTTTTTTTTCCCTATTACCACATAATAATATTAATCTCATAAAACCAAATATTCATA ATTAAAGAACTATAATGCTTTTAATTAAAAATAATATATAAATAAAAATATAAAAAATAATATAT AAATAAATATATTATTAATCAGAATTGTAATTTTATATTTTTTATAAGTAAAGGTGATGTTCTTT TAAATGAGTCTTCTTTTAAACACAAAAAATGCAATATTTTTTTCTGGTATTTCTAGCTGTTTTAG CAAAAGGGTTTTTAAGAAATAAAGGTAAATATTAAATAAATATAT Found at i:610399 original size:11 final size:11 Alignment explanation
Indices: 610383--610404 Score: 44 Period size: 11 Copynumber: 2.0 Consensus size: 11 610373 TAAATATAGA 610383 ATATATTATAT 1 ATATATTATAT 610394 ATATATTATAT 1 ATATATTATAT 610405 TTTTTTTTTT Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 11 11 1.00 ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55 Consensus pattern (11 bp): ATATATTATAT Left flanking sequence: Indices 609883 -- 610382 TTATATCTGCTTTTTTTTTTTTTTTTTTTTTTTTTTCTATTATTAATTTTTAAATTATCTACTTA CGAATTTTTTAATTGTTGATATGGCCTTCATGAGTATATTATTATGCATGAAAGAAAAAAAAAAA AAAAAATATATATATGTATATAATATATATATATATATATATAATATACCAATTTTTATTATCTT ATATTTTACATGCACTATAAATGCATAGAATTTTTCTTTTTTTTTTTTTTGATTTCTTCTCCCCA AATTTTTGGTTATTTATATAATATACGTATTATAAATATGTACATATAATATGTATATATTATAA TGTGTAATTTTCCACATATATATATAAAATATATATATATATATATATATATTTTAATAATACTT GAACTTTTAAAATTAAATATATAAAAAGGAATCCAATTAATTTATGGTTATATTATTTGTTATTC ACTAGAAAATTCTCTAGAATTTAATAAAACATATATAAATATAGA Right flanking sequence: Indices 610405 -- 610904 TTTTTTTTTTTTTTCCCTATTACCACATAATAATATTAATCTCATAAAACCAAATATTCATAATT AAAGAACTATAATGCTTTTAATTAAAAATAATATATAAATAAAAATATAAAAAATAATATATAAA TAAATATATTATTAATCAGAATTGTAATTTTATATTTTTTATAAGTAAAGGTGATGTTCTTTTAA ATGAGTCTTCTTTTAAACACAAAAAATGCAATATTTTTTTCTGGTATTTCTAGCTGTTTTAGCAA AAGGGTTTTTAAGAAATAAAGGTAAATATTAAATAAATATATATATATATAAATAAATATATATA TATATATAATTATATATTTTATTCCTATATAAATGATTACATCATAATAAGATGGTACACCCCTT AGTCATTATGATATATATATATATATATATGTATGTATTTATTTATTTATTTATTTATTTTATTT CTTTTTTTTAAGAACACGCCAATTTAATAAACTCATACAATGACA Found at i:610518 original size:14 final size:14 Alignment explanation
Indices: 610499--610543 Score: 62 Period size: 14 Copynumber: 3.4 Consensus size: 14 610489 AATTAAAAAT 610499 AATATATAAATAAA 1 AATATATAAATAAA * 610513 AATATA-AAA-AAT 1 AATATATAAATAAA 610525 AATATATAAATAAA 1 AATATATAAATAAA * 610539 TATAT 1 AATAT 610544 TATTAATCAG Statistics Matches: 26, Mismatches: 3, Indels: 4 0.79 0.09 0.12 Matches are distributed among these distances: 12 8 0.31 13 6 0.23 14 12 0.46 ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31 Consensus pattern (14 bp): AATATATAAATAAA Left flanking sequence: Indices 609999 -- 610498 AAGAAAAAAAAAAAAAAAAATATATATATGTATATAATATATATATATATATATATAATATACCA ATTTTTATTATCTTATATTTTACATGCACTATAAATGCATAGAATTTTTCTTTTTTTTTTTTTTG ATTTCTTCTCCCCAAATTTTTGGTTATTTATATAATATACGTATTATAAATATGTACATATAATA TGTATATATTATAATGTGTAATTTTCCACATATATATATAAAATATATATATATATATATATATA TTTTAATAATACTTGAACTTTTAAAATTAAATATATAAAAAGGAATCCAATTAATTTATGGTTAT ATTATTTGTTATTCACTAGAAAATTCTCTAGAATTTAATAAAACATATATAAATATAGAATATAT TATATATATATTATATTTTTTTTTTTTTTTCCCTATTACCACATAATAATATTAATCTCATAAAA CCAAATATTCATAATTAAAGAACTATAATGCTTTTAATTAAAAAT Right flanking sequence: Indices 610544 -- 611043 TATTAATCAGAATTGTAATTTTATATTTTTTATAAGTAAAGGTGATGTTCTTTTAAATGAGTCTT CTTTTAAACACAAAAAATGCAATATTTTTTTCTGGTATTTCTAGCTGTTTTAGCAAAAGGGTTTT TAAGAAATAAAGGTAAATATTAAATAAATATATATATATATAAATAAATATATATATATATATAA TTATATATTTTATTCCTATATAAATGATTACATCATAATAAGATGGTACACCCCTTAGTCATTAT GATATATATATATATATATATGTATGTATTTATTTATTTATTTATTTATTTTATTTCTTTTTTTT AAGAACACGCCAATTTAATAAACTCATACAATGACATTGTAGAAGATATAAATATTAAAAAGGAA GAGAAAAGTTCAAGTGAACCTCCTTTCATTCCTATAAAAAATAAGATAGATAATGTTCATACAAA AAATAACAATCAATATAATTTACATAATAATAAATCTAATAAAAC Found at i:610519 original size:12 final size:12 Alignment explanation
Indices: 610502--610543 Score: 52 Period size: 12 Copynumber: 3.3 Consensus size: 12 610492 TAAAAATAAT 610502 ATATAAATAAAA 1 ATATAAATAAAA * 610514 ATATAAAAAATAA 1 ATATAAATAA-AA * 610527 TATATAAATAAAT 1 -ATATAAATAAAA 610540 ATAT 1 ATAT 610544 TATTAATCAG Statistics Matches: 25, Mismatches: 3, Indels: 4 0.78 0.09 0.12 Matches are distributed among these distances: 12 13 0.52 13 3 0.12 14 9 0.36 ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31 Consensus pattern (12 bp): ATATAAATAAAA Left flanking sequence: Indices 610002 -- 610501 AAAAAAAAAAAAAAAAATATATATATGTATATAATATATATATATATATATATAATATACCAATT TTTATTATCTTATATTTTACATGCACTATAAATGCATAGAATTTTTCTTTTTTTTTTTTTTGATT TCTTCTCCCCAAATTTTTGGTTATTTATATAATATACGTATTATAAATATGTACATATAATATGT ATATATTATAATGTGTAATTTTCCACATATATATATAAAATATATATATATATATATATATATTT TAATAATACTTGAACTTTTAAAATTAAATATATAAAAAGGAATCCAATTAATTTATGGTTATATT ATTTGTTATTCACTAGAAAATTCTCTAGAATTTAATAAAACATATATAAATATAGAATATATTAT ATATATATTATATTTTTTTTTTTTTTTCCCTATTACCACATAATAATATTAATCTCATAAAACCA AATATTCATAATTAAAGAACTATAATGCTTTTAATTAAAAATAAT Right flanking sequence: Indices 610544 -- 611043 TATTAATCAGAATTGTAATTTTATATTTTTTATAAGTAAAGGTGATGTTCTTTTAAATGAGTCTT CTTTTAAACACAAAAAATGCAATATTTTTTTCTGGTATTTCTAGCTGTTTTAGCAAAAGGGTTTT TAAGAAATAAAGGTAAATATTAAATAAATATATATATATATAAATAAATATATATATATATATAA TTATATATTTTATTCCTATATAAATGATTACATCATAATAAGATGGTACACCCCTTAGTCATTAT GATATATATATATATATATATGTATGTATTTATTTATTTATTTATTTATTTTATTTCTTTTTTTT AAGAACACGCCAATTTAATAAACTCATACAATGACATTGTAGAAGATATAAATATTAAAAAGGAA GAGAAAAGTTCAAGTGAACCTCCTTTCATTCCTATAAAAAATAAGATAGATAATGTTCATACAAA AAATAACAATCAATATAATTTACATAATAATAAATCTAATAAAAC Found at i:610522 original size:26 final size:26 Alignment explanation
Indices: 610493--610543 Score: 95 Period size: 26 Copynumber: 2.0 Consensus size: 26 610483 GCTTTTAATT 610493 AAAAATAATATATAAATAAAAATATA 1 AAAAATAATATATAAATAAAAATATA * 610519 AAAAATAATATATAAATAAATATAT 1 AAAAATAATATATAAATAAAAATAT 610544 TATTAATCAG Statistics Matches: 24, Mismatches: 1, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 26 24 1.00 ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29 Consensus pattern (26 bp): AAAAATAATATATAAATAAAAATATA Left flanking sequence: Indices 609993 -- 610492 GCATGAAAGAAAAAAAAAAAAAAAAATATATATATGTATATAATATATATATATATATATATAAT ATACCAATTTTTATTATCTTATATTTTACATGCACTATAAATGCATAGAATTTTTCTTTTTTTTT TTTTTGATTTCTTCTCCCCAAATTTTTGGTTATTTATATAATATACGTATTATAAATATGTACAT ATAATATGTATATATTATAATGTGTAATTTTCCACATATATATATAAAATATATATATATATATA TATATATTTTAATAATACTTGAACTTTTAAAATTAAATATATAAAAAGGAATCCAATTAATTTAT GGTTATATTATTTGTTATTCACTAGAAAATTCTCTAGAATTTAATAAAACATATATAAATATAGA ATATATTATATATATATTATATTTTTTTTTTTTTTTCCCTATTACCACATAATAATATTAATCTC ATAAAACCAAATATTCATAATTAAAGAACTATAATGCTTTTAATT Right flanking sequence: Indices 610544 -- 611043 TATTAATCAGAATTGTAATTTTATATTTTTTATAAGTAAAGGTGATGTTCTTTTAAATGAGTCTT CTTTTAAACACAAAAAATGCAATATTTTTTTCTGGTATTTCTAGCTGTTTTAGCAAAAGGGTTTT TAAGAAATAAAGGTAAATATTAAATAAATATATATATATATAAATAAATATATATATATATATAA TTATATATTTTATTCCTATATAAATGATTACATCATAATAAGATGGTACACCCCTTAGTCATTAT GATATATATATATATATATATGTATGTATTTATTTATTTATTTATTTATTTTATTTCTTTTTTTT AAGAACACGCCAATTTAATAAACTCATACAATGACATTGTAGAAGATATAAATATTAAAAAGGAA GAGAAAAGTTCAAGTGAACCTCCTTTCATTCCTATAAAAAATAAGATAGATAATGTTCATACAAA AAATAACAATCAATATAATTTACATAATAATAAATCTAATAAAAC Found at i:610719 original size:20 final size:20 Alignment explanation
Indices: 610690--610746 Score: 86 Period size: 20 Copynumber: 3.0 Consensus size: 20 610680 ATAAAGGTAA 610690 ATAT-TAAATAAATATATAT 1 ATATATAAATAAATATATAT 610709 ATATATAAATAAATATATAT 1 ATATATAAATAAATATATAT * 610729 ATATAT--ATAATTATATAT 1 ATATATAAATAAATATATAT 610747 TTTATTCCTA Statistics Matches: 36, Mismatches: 1, Indels: 3 0.90 0.03 0.07 Matches are distributed among these distances: 18 11 0.31 19 4 0.11 20 21 0.58 ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44 Consensus pattern (20 bp): ATATATAAATAAATATATAT Left flanking sequence: Indices 610190 -- 610689 AATATGTATATATTATAATGTGTAATTTTCCACATATATATATAAAATATATATATATATATATA TATATTTTAATAATACTTGAACTTTTAAAATTAAATATATAAAAAGGAATCCAATTAATTTATGG TTATATTATTTGTTATTCACTAGAAAATTCTCTAGAATTTAATAAAACATATATAAATATAGAAT ATATTATATATATATTATATTTTTTTTTTTTTTTCCCTATTACCACATAATAATATTAATCTCAT AAAACCAAATATTCATAATTAAAGAACTATAATGCTTTTAATTAAAAATAATATATAAATAAAAA TATAAAAAATAATATATAAATAAATATATTATTAATCAGAATTGTAATTTTATATTTTTTATAAG TAAAGGTGATGTTCTTTTAAATGAGTCTTCTTTTAAACACAAAAAATGCAATATTTTTTTCTGGT ATTTCTAGCTGTTTTAGCAAAAGGGTTTTTAAGAAATAAAGGTAA Right flanking sequence: Indices 610747 -- 611246 TTTATTCCTATATAAATGATTACATCATAATAAGATGGTACACCCCTTAGTCATTATGATATATA TATATATATATATGTATGTATTTATTTATTTATTTATTTATTTTATTTCTTTTTTTTAAGAACAC GCCAATTTAATAAACTCATACAATGACATTGTAGAAGATATAAATATTAAAAAGGAAGAGAAAAG TTCAAGTGAACCTCCTTTCATTCCTATAAAAAATAAGATAGATAATGTTCATACAAAAAATAACA ATCAATATAATTTACATAATAATAAATCTAATAAAACACACCTTACTTATGGAACACATACTAGC TTTTTACAAAACTGCACCATCAATGATTGTGTAGATGTCGATAATAAAGATTCTGAAATTAATAA TATAACAAAAGAAAAAGATGATAATAATAATAATAATGGAACTAAGCAAATTGAAGAGAAAAATA AAATCAATAAAAGCGATTTGCATAGACAAAATGAATTAAATTTAC Found at i:610822 original size:12 final size:12 Alignment explanation
Indices: 610800--610852 Score: 55 Period size: 12 Copynumber: 4.3 Consensus size: 12 610790 CCCTTAGTCA 610800 TTATGATATATAT 1 TTAT-ATATATAT * 610813 ATATATATATAT 1 TTATATATATAT * * * 610825 GTATGTATTTAT 1 TTATATATATAT * * 610837 TTATTTATTTAT 1 TTATATATATAT 610849 TTAT 1 TTAT 610853 TTTATTTCTT Statistics Matches: 34, Mismatches: 6, Indels: 1 0.83 0.15 0.02 Matches are distributed among these distances: 12 31 0.91 13 3 0.09 ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60 Consensus pattern (12 bp): TTATATATATAT Left flanking sequence: Indices 610300 -- 610799 GGAATCCAATTAATTTATGGTTATATTATTTGTTATTCACTAGAAAATTCTCTAGAATTTAATAA AACATATATAAATATAGAATATATTATATATATATTATATTTTTTTTTTTTTTTCCCTATTACCA CATAATAATATTAATCTCATAAAACCAAATATTCATAATTAAAGAACTATAATGCTTTTAATTAA AAATAATATATAAATAAAAATATAAAAAATAATATATAAATAAATATATTATTAATCAGAATTGT AATTTTATATTTTTTATAAGTAAAGGTGATGTTCTTTTAAATGAGTCTTCTTTTAAACACAAAAA ATGCAATATTTTTTTCTGGTATTTCTAGCTGTTTTAGCAAAAGGGTTTTTAAGAAATAAAGGTAA ATATTAAATAAATATATATATATATAAATAAATATATATATATATATAATTATATATTTTATTCC TATATAAATGATTACATCATAATAAGATGGTACACCCCTTAGTCA Right flanking sequence: Indices 610853 -- 611352 TTTATTTCTTTTTTTTAAGAACACGCCAATTTAATAAACTCATACAATGACATTGTAGAAGATAT AAATATTAAAAAGGAAGAGAAAAGTTCAAGTGAACCTCCTTTCATTCCTATAAAAAATAAGATAG ATAATGTTCATACAAAAAATAACAATCAATATAATTTACATAATAATAAATCTAATAAAACACAC CTTACTTATGGAACACATACTAGCTTTTTACAAAACTGCACCATCAATGATTGTGTAGATGTCGA TAATAAAGATTCTGAAATTAATAATATAACAAAAGAAAAAGATGATAATAATAATAATAATGGAA CTAAGCAAATTGAAGAGAAAAATAAAATCAATAAAAGCGATTTGCATAGACAAAATGAATTAAAT TTACAAAGTGGAAAAAATGAACAAGACATAAATAAAAATGAAAAAGGAAAACAGGATATCTCTAA TTCCAATGCAGAGAACAAAAAGGATGTAAAAGAAGGAGTGAAAGA Found at i:611353 original size:12 final size:13 Alignment explanation
Indices: 611327--611353 Score: 40 Period size: 12 Copynumber: 2.2 Consensus size: 13 611317 AGAGAACAAA 611327 AAGGATGTAAAAG 1 AAGGATGTAAAAG * 611340 AAGGA-GTGAAAG 1 AAGGATGTAAAAG 611352 AA 1 AA 611354 TTAGAAGAAA Statistics Matches: 13, Mismatches: 1, Indels: 1 0.87 0.07 0.07 Matches are distributed among these distances: 12 8 0.62 13 5 0.38 ACGTcount: A:0.56, C:0.00, G:0.33, T:0.11 Consensus pattern (13 bp): AAGGATGTAAAAG Left flanking sequence: Indices 610827 -- 611326 ATGTATTTATTTATTTATTTATTTATTTTATTTCTTTTTTTTAAGAACACGCCAATTTAATAAAC TCATACAATGACATTGTAGAAGATATAAATATTAAAAAGGAAGAGAAAAGTTCAAGTGAACCTCC TTTCATTCCTATAAAAAATAAGATAGATAATGTTCATACAAAAAATAACAATCAATATAATTTAC ATAATAATAAATCTAATAAAACACACCTTACTTATGGAACACATACTAGCTTTTTACAAAACTGC ACCATCAATGATTGTGTAGATGTCGATAATAAAGATTCTGAAATTAATAATATAACAAAAGAAAA AGATGATAATAATAATAATAATGGAACTAAGCAAATTGAAGAGAAAAATAAAATCAATAAAAGCG ATTTGCATAGACAAAATGAATTAAATTTACAAAGTGGAAAAAATGAACAAGACATAAATAAAAAT GAAAAAGGAAAACAGGATATCTCTAATTCCAATGCAGAGAACAAA Right flanking sequence: Indices 611354 -- 611853 TTAGAAGAAAAGAAAAAAGAAGAGAAAATTTCAGATGATCATAAAGTAGAGGAAAACAAAAAATC TGATGACCATAAAGTTGAGGAAAACAAAAAATCTGATGATCATAAAGTTGAGGAAAACAAAAAAT CTGATGATCATAAAATAGAAGAAGTAAAAAAAGTAGAGGAACATGAAGAAGACGAAGAAGAGGAT AAGAAAGAAAAAAAATCAGAAAACAAAAATAAAGATGAAAATAAAGATGAAAATGATGAAGATAA TGATGAAATAAGTGATGAAGATGAAGTTGATGATGATGTTGAAGAAGATAAAAATGAAAATGATG ATATTGATGATGATAAAAAGGAAACAGATAAAACACATTTGGAAGAAGAGGAAAATGAAATAATT GAAAAGGAATTTAGTGATAAGAAAAAGAATGGTAAAAATAAAGATACTAAGAAGGAAAAAAGTAA AGATACTGAGAAGGAAAAAAGTAAAGATATAGAGAAGGAAAAAAG i:611379 original size:12 final size:12 Alignment explanation
Indices: 611358--611381 Score: 41 Period size: 12 Copynumber: 2.0 Consensus size: 12 611348 AAAGAATTAG 611358 AAGAAAAGAAAA 1 AAGAAAAGAAAA * 611370 AAGAAGAGAAAA 1 AAGAAAAGAAAA 611382 TTTCAGATGA Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 12 11 1.00 ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00 Consensus pattern (12 bp): AAGAAAAGAAAA Left flanking sequence: Indices 610858 -- 611357 TTCTTTTTTTTAAGAACACGCCAATTTAATAAACTCATACAATGACATTGTAGAAGATATAAATA TTAAAAAGGAAGAGAAAAGTTCAAGTGAACCTCCTTTCATTCCTATAAAAAATAAGATAGATAAT GTTCATACAAAAAATAACAATCAATATAATTTACATAATAATAAATCTAATAAAACACACCTTAC TTATGGAACACATACTAGCTTTTTACAAAACTGCACCATCAATGATTGTGTAGATGTCGATAATA AAGATTCTGAAATTAATAATATAACAAAAGAAAAAGATGATAATAATAATAATAATGGAACTAAG CAAATTGAAGAGAAAAATAAAATCAATAAAAGCGATTTGCATAGACAAAATGAATTAAATTTACA AAGTGGAAAAAATGAACAAGACATAAATAAAAATGAAAAAGGAAAACAGGATATCTCTAATTCCA ATGCAGAGAACAAAAAGGATGTAAAAGAAGGAGTGAAAGAATTAG Right flanking sequence: Indices 611382 -- 611881 TTTCAGATGATCATAAAGTAGAGGAAAACAAAAAATCTGATGACCATAAAGTTGAGGAAAACAAA AAATCTGATGATCATAAAGTTGAGGAAAACAAAAAATCTGATGATCATAAAATAGAAGAAGTAAA AAAAGTAGAGGAACATGAAGAAGACGAAGAAGAGGATAAGAAAGAAAAAAAATCAGAAAACAAAA ATAAAGATGAAAATAAAGATGAAAATGATGAAGATAATGATGAAATAAGTGATGAAGATGAAGTT GATGATGATGTTGAAGAAGATAAAAATGAAAATGATGATATTGATGATGATAAAAAGGAAACAGA TAAAACACATTTGGAAGAAGAGGAAAATGAAATAATTGAAAAGGAATTTAGTGATAAGAAAAAGA ATGGTAAAAATAAAGATACTAAGAAGGAAAAAAGTAAAGATACTGAGAAGGAAAAAAGTAAAGAT ATAGAGAAGGAAAAAAGTAAAGATAAAGAGAAGGAAAAAAGTAAA Found at i:611515 original size:33 final size:33 Alignment explanation
Indices: 611387--611506 Score: 205 Period size: 33 Copynumber: 3.6 Consensus size: 33 611377 GAAAATTTCA 611387 GATGATCATAAAGTAGAGGAAAACAAAAAATCT 1 GATGATCATAAAGTAGAGGAAAACAAAAAATCT * * 611420 GATGACCATAAAGTTGAGGAAAACAAAAAATCT 1 GATGATCATAAAGTAGAGGAAAACAAAAAATCT * 611453 GATGATCATAAAGTTGAGGAAAACAAAAAATCT 1 GATGATCATAAAGTAGAGGAAAACAAAAAATCT * * 611486 GATGATCATAAAATAGAAGAA 1 GATGATCATAAAGTAGAGGAA 611507 GTAAAAAAAG Statistics Matches: 81, Mismatches: 6, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 33 81 1.00 ACGTcount: A:0.53, C:0.09, G:0.18, T:0.19 Consensus pattern (33 bp): GATGATCATAAAGTAGAGGAAAACAAAAAATCT Left flanking sequence: Indices 610887 -- 611386 TAAACTCATACAATGACATTGTAGAAGATATAAATATTAAAAAGGAAGAGAAAAGTTCAAGTGAA CCTCCTTTCATTCCTATAAAAAATAAGATAGATAATGTTCATACAAAAAATAACAATCAATATAA TTTACATAATAATAAATCTAATAAAACACACCTTACTTATGGAACACATACTAGCTTTTTACAAA ACTGCACCATCAATGATTGTGTAGATGTCGATAATAAAGATTCTGAAATTAATAATATAACAAAA GAAAAAGATGATAATAATAATAATAATGGAACTAAGCAAATTGAAGAGAAAAATAAAATCAATAA AAGCGATTTGCATAGACAAAATGAATTAAATTTACAAAGTGGAAAAAATGAACAAGACATAAATA AAAATGAAAAAGGAAAACAGGATATCTCTAATTCCAATGCAGAGAACAAAAAGGATGTAAAAGAA GGAGTGAAAGAATTAGAAGAAAAGAAAAAAGAAGAGAAAATTTCA Right flanking sequence: Indices 611507 -- 612006 GTAAAAAAAGTAGAGGAACATGAAGAAGACGAAGAAGAGGATAAGAAAGAAAAAAAATCAGAAAA CAAAAATAAAGATGAAAATAAAGATGAAAATGATGAAGATAATGATGAAATAAGTGATGAAGATG AAGTTGATGATGATGTTGAAGAAGATAAAAATGAAAATGATGATATTGATGATGATAAAAAGGAA ACAGATAAAACACATTTGGAAGAAGAGGAAAATGAAATAATTGAAAAGGAATTTAGTGATAAGAA AAAGAATGGTAAAAATAAAGATACTAAGAAGGAAAAAAGTAAAGATACTGAGAAGGAAAAAAGTA AAGATATAGAGAAGGAAAAAAGTAAAGATAAAGAGAAGGAAAAAAGTAAAGATAAAGAGAAGGAA AAAGGTAAAGATAAAGAGAAGGAAAAAAGTAAAGATATTGAGAAGGAAAAAGAAAAAGATAAAGA TATAGAGAAGGAAAAAAGTAAAGATACTGCGAAGGAAAAAGAAAA Found at i:611588 original size:18 final size:18 Alignment explanation
Indices: 611567--611604 Score: 48 Period size: 18 Copynumber: 2.1 Consensus size: 18 611557 AAAAAAATCA * 611567 GAAAACAAAAATAAAGAT 1 GAAAACAAAAATAAAAAT * * * 611585 GAAAATAAAGATGAAAAT 1 GAAAACAAAAATAAAAAT 611603 GA 1 GA 611605 TGAAGATAAT Statistics Matches: 16, Mismatches: 4, Indels: 0 0.80 0.20 0.00 Matches are distributed among these distances: 18 16 1.00 ACGTcount: A:0.68, C:0.03, G:0.16, T:0.13 Consensus pattern (18 bp): GAAAACAAAAATAAAAAT Left flanking sequence: Indices 611067 -- 611566 CTAGCTTTTTACAAAACTGCACCATCAATGATTGTGTAGATGTCGATAATAAAGATTCTGAAATT AATAATATAACAAAAGAAAAAGATGATAATAATAATAATAATGGAACTAAGCAAATTGAAGAGAA AAATAAAATCAATAAAAGCGATTTGCATAGACAAAATGAATTAAATTTACAAAGTGGAAAAAATG AACAAGACATAAATAAAAATGAAAAAGGAAAACAGGATATCTCTAATTCCAATGCAGAGAACAAA AAGGATGTAAAAGAAGGAGTGAAAGAATTAGAAGAAAAGAAAAAAGAAGAGAAAATTTCAGATGA TCATAAAGTAGAGGAAAACAAAAAATCTGATGACCATAAAGTTGAGGAAAACAAAAAATCTGATG ATCATAAAGTTGAGGAAAACAAAAAATCTGATGATCATAAAATAGAAGAAGTAAAAAAAGTAGAG GAACATGAAGAAGACGAAGAAGAGGATAAGAAAGAAAAAAAATCA Right flanking sequence: Indices 611605 -- 612104 TGAAGATAATGATGAAATAAGTGATGAAGATGAAGTTGATGATGATGTTGAAGAAGATAAAAATG AAAATGATGATATTGATGATGATAAAAAGGAAACAGATAAAACACATTTGGAAGAAGAGGAAAAT GAAATAATTGAAAAGGAATTTAGTGATAAGAAAAAGAATGGTAAAAATAAAGATACTAAGAAGGA AAAAAGTAAAGATACTGAGAAGGAAAAAAGTAAAGATATAGAGAAGGAAAAAAGTAAAGATAAAG AGAAGGAAAAAAGTAAAGATAAAGAGAAGGAAAAAGGTAAAGATAAAGAGAAGGAAAAAAGTAAA GATATTGAGAAGGAAAAAGAAAAAGATAAAGATATAGAGAAGGAAAAAAGTAAAGATACTGCGAA GGAAAAAGAAAAAGATAAAGATATAGAGAAAGAAAAAAGCAAAGATATGGAAAAATTAAAGAATA AACAAAATGATGAAAAAAAGAAAGACGATAACGAAAAGAAAAAAA Found at i:611589 original size:12 final size:12 Alignment explanation
Indices: 611574--611621 Score: 61 Period size: 12 Copynumber: 4.2 Consensus size: 12 611564 TCAGAAAACA 611574 AAAATAAAGATG 1 AAAATAAAGATG 611586 AAAATAAAGATG 1 AAAATAAAGATG 611598 AAAAT---GATG 1 AAAATAAAGATG * * 611607 AAGATAATGATG 1 AAAATAAAGATG 611619 AAA 1 AAA 611622 TAAGTGATGA Statistics Matches: 31, Mismatches: 2, Indels: 6 0.79 0.05 0.15 Matches are distributed among these distances: 9 8 0.26 12 23 0.74 ACGTcount: A:0.62, C:0.00, G:0.19, T:0.19 Consensus pattern (12 bp): AAAATAAAGATG Left flanking sequence: Indices 611074 -- 611573 TTTACAAAACTGCACCATCAATGATTGTGTAGATGTCGATAATAAAGATTCTGAAATTAATAATA TAACAAAAGAAAAAGATGATAATAATAATAATAATGGAACTAAGCAAATTGAAGAGAAAAATAAA ATCAATAAAAGCGATTTGCATAGACAAAATGAATTAAATTTACAAAGTGGAAAAAATGAACAAGA CATAAATAAAAATGAAAAAGGAAAACAGGATATCTCTAATTCCAATGCAGAGAACAAAAAGGATG TAAAAGAAGGAGTGAAAGAATTAGAAGAAAAGAAAAAAGAAGAGAAAATTTCAGATGATCATAAA GTAGAGGAAAACAAAAAATCTGATGACCATAAAGTTGAGGAAAACAAAAAATCTGATGATCATAA AGTTGAGGAAAACAAAAAATCTGATGATCATAAAATAGAAGAAGTAAAAAAAGTAGAGGAACATG AAGAAGACGAAGAAGAGGATAAGAAAGAAAAAAAATCAGAAAACA Right flanking sequence: Indices 611622 -- 612121 TAAGTGATGAAGATGAAGTTGATGATGATGTTGAAGAAGATAAAAATGAAAATGATGATATTGAT GATGATAAAAAGGAAACAGATAAAACACATTTGGAAGAAGAGGAAAATGAAATAATTGAAAAGGA ATTTAGTGATAAGAAAAAGAATGGTAAAAATAAAGATACTAAGAAGGAAAAAAGTAAAGATACTG AGAAGGAAAAAAGTAAAGATATAGAGAAGGAAAAAAGTAAAGATAAAGAGAAGGAAAAAAGTAAA GATAAAGAGAAGGAAAAAGGTAAAGATAAAGAGAAGGAAAAAAGTAAAGATATTGAGAAGGAAAA AGAAAAAGATAAAGATATAGAGAAGGAAAAAAGTAAAGATACTGCGAAGGAAAAAGAAAAAGATA AAGATATAGAGAAAGAAAAAAGCAAAGATATGGAAAAATTAAAGAATAAACAAAATGATGAAAAA AAGAAAGACGATAACGAAAAGAAAAAAAATGATAAACAAGATATA Found at i:611619 original size:33 final size:33 Alignment explanation
Indices: 611577--611651 Score: 85 Period size: 33 Copynumber: 2.3 Consensus size: 33 611567 GAAAACAAAA * * 611577 ATAAAGATGAAAATAA-AGATGAAAATGATGAAG 1 ATAATGATG-AAATAAGAGATGAAAATGAAGAAG * * ** 611610 ATAATGATGAAATAAGTGATGAAGATGAAGTTG 1 ATAATGATGAAATAAGAGATGAAAATGAAGAAG * 611643 ATGATGATG 1 ATAATGATG 611652 TTGAAGAAGA Statistics Matches: 34, Mismatches: 7, Indels: 2 0.79 0.16 0.05 Matches are distributed among these distances: 32 6 0.18 33 28 0.82 ACGTcount: A:0.51, C:0.00, G:0.25, T:0.24 Consensus pattern (33 bp): ATAATGATGAAATAAGAGATGAAAATGAAGAAG Left flanking sequence: Indices 611077 -- 611576 ACAAAACTGCACCATCAATGATTGTGTAGATGTCGATAATAAAGATTCTGAAATTAATAATATAA CAAAAGAAAAAGATGATAATAATAATAATAATGGAACTAAGCAAATTGAAGAGAAAAATAAAATC AATAAAAGCGATTTGCATAGACAAAATGAATTAAATTTACAAAGTGGAAAAAATGAACAAGACAT AAATAAAAATGAAAAAGGAAAACAGGATATCTCTAATTCCAATGCAGAGAACAAAAAGGATGTAA AAGAAGGAGTGAAAGAATTAGAAGAAAAGAAAAAAGAAGAGAAAATTTCAGATGATCATAAAGTA GAGGAAAACAAAAAATCTGATGACCATAAAGTTGAGGAAAACAAAAAATCTGATGATCATAAAGT TGAGGAAAACAAAAAATCTGATGATCATAAAATAGAAGAAGTAAAAAAAGTAGAGGAACATGAAG AAGACGAAGAAGAGGATAAGAAAGAAAAAAAATCAGAAAACAAAA Right flanking sequence: Indices 611652 -- 612151 TTGAAGAAGATAAAAATGAAAATGATGATATTGATGATGATAAAAAGGAAACAGATAAAACACAT TTGGAAGAAGAGGAAAATGAAATAATTGAAAAGGAATTTAGTGATAAGAAAAAGAATGGTAAAAA TAAAGATACTAAGAAGGAAAAAAGTAAAGATACTGAGAAGGAAAAAAGTAAAGATATAGAGAAGG AAAAAAGTAAAGATAAAGAGAAGGAAAAAAGTAAAGATAAAGAGAAGGAAAAAGGTAAAGATAAA GAGAAGGAAAAAAGTAAAGATATTGAGAAGGAAAAAGAAAAAGATAAAGATATAGAGAAGGAAAA AAGTAAAGATACTGCGAAGGAAAAAGAAAAAGATAAAGATATAGAGAAAGAAAAAAGCAAAGATA TGGAAAAATTAAAGAATAAACAAAATGATGAAAAAAAGAAAGACGATAACGAAAAGAAAAAAAAT GATAAACAAGATATACATGATGATAATGATGATGAAAATGATATG Found at i:611629 original size:12 final size:13 Alignment explanation
Indices: 611602--611650 Score: 59 Period size: 12 Copynumber: 3.8 Consensus size: 13 611592 AAGATGAAAA 611602 TGATGAAGATAA- 1 TGATGAAGATAAG 611614 TGATGAA-ATAAG 1 TGATGAAGATAAG 611626 TGATGAAGATGAAG 1 TGATGAAGAT-AAG * 611640 TTGATGATGAT 1 -TGATGAAGAT 611651 GTTGAAGAAG Statistics Matches: 32, Mismatches: 1, Indels: 5 0.84 0.03 0.13 Matches are distributed among these distances: 11 4 0.12 12 14 0.44 13 2 0.06 14 3 0.09 15 9 0.28 ACGTcount: A:0.43, C:0.00, G:0.29, T:0.29 Consensus pattern (13 bp): TGATGAAGATAAG Left flanking sequence: Indices 611102 -- 611601 GTAGATGTCGATAATAAAGATTCTGAAATTAATAATATAACAAAAGAAAAAGATGATAATAATAA TAATAATGGAACTAAGCAAATTGAAGAGAAAAATAAAATCAATAAAAGCGATTTGCATAGACAAA ATGAATTAAATTTACAAAGTGGAAAAAATGAACAAGACATAAATAAAAATGAAAAAGGAAAACAG GATATCTCTAATTCCAATGCAGAGAACAAAAAGGATGTAAAAGAAGGAGTGAAAGAATTAGAAGA AAAGAAAAAAGAAGAGAAAATTTCAGATGATCATAAAGTAGAGGAAAACAAAAAATCTGATGACC ATAAAGTTGAGGAAAACAAAAAATCTGATGATCATAAAGTTGAGGAAAACAAAAAATCTGATGAT CATAAAATAGAAGAAGTAAAAAAAGTAGAGGAACATGAAGAAGACGAAGAAGAGGATAAGAAAGA AAAAAAATCAGAAAACAAAAATAAAGATGAAAATAAAGATGAAAA Right flanking sequence: Indices 611651 -- 612150 GTTGAAGAAGATAAAAATGAAAATGATGATATTGATGATGATAAAAAGGAAACAGATAAAACACA TTTGGAAGAAGAGGAAAATGAAATAATTGAAAAGGAATTTAGTGATAAGAAAAAGAATGGTAAAA ATAAAGATACTAAGAAGGAAAAAAGTAAAGATACTGAGAAGGAAAAAAGTAAAGATATAGAGAAG GAAAAAAGTAAAGATAAAGAGAAGGAAAAAAGTAAAGATAAAGAGAAGGAAAAAGGTAAAGATAA AGAGAAGGAAAAAAGTAAAGATATTGAGAAGGAAAAAGAAAAAGATAAAGATATAGAGAAGGAAA AAAGTAAAGATACTGCGAAGGAAAAAGAAAAAGATAAAGATATAGAGAAAGAAAAAAGCAAAGAT ATGGAAAAATTAAAGAATAAACAAAATGATGAAAAAAAGAAAGACGATAACGAAAAGAAAAAAAA TGATAAACAAGATATACATGATGATAATGATGATGAAAATGATAT Found at i:611634 original size:24 final size:21 Alignment explanation
Indices: 611582--611670 Score: 74 Period size: 21 Copynumber: 4.1 Consensus size: 21 611572 CAAAAATAAA * 611582 GATGAAAATAAAGATGAAAAT 1 GATGAAGATAAAGATGAAAAT * 611603 GATGAAGATAATGATGAAATAAGT 1 GATGAAGATAAAGATG-AA-AA-T * * ** 611627 GATGAAGATGAAGTTGATGAT 1 GATGAAGATAAAGATGAAAAT ** ** * 611648 GATGTTGAAGAAGATAAAAAT 1 GATGAAGATAAAGATGAAAAT 611669 GA 1 GA 611671 AAATGATGAT Statistics Matches: 51, Mismatches: 14, Indels: 6 0.72 0.20 0.08 Matches are distributed among these distances: 21 31 0.61 22 3 0.06 23 3 0.06 24 14 0.27 ACGTcount: A:0.51, C:0.00, G:0.26, T:0.24 Consensus pattern (21 bp): GATGAAGATAAAGATGAAAAT Left flanking sequence: Indices 611082 -- 611581 ACTGCACCATCAATGATTGTGTAGATGTCGATAATAAAGATTCTGAAATTAATAATATAACAAAA GAAAAAGATGATAATAATAATAATAATGGAACTAAGCAAATTGAAGAGAAAAATAAAATCAATAA AAGCGATTTGCATAGACAAAATGAATTAAATTTACAAAGTGGAAAAAATGAACAAGACATAAATA AAAATGAAAAAGGAAAACAGGATATCTCTAATTCCAATGCAGAGAACAAAAAGGATGTAAAAGAA GGAGTGAAAGAATTAGAAGAAAAGAAAAAAGAAGAGAAAATTTCAGATGATCATAAAGTAGAGGA AAACAAAAAATCTGATGACCATAAAGTTGAGGAAAACAAAAAATCTGATGATCATAAAGTTGAGG AAAACAAAAAATCTGATGATCATAAAATAGAAGAAGTAAAAAAAGTAGAGGAACATGAAGAAGAC GAAGAAGAGGATAAGAAAGAAAAAAAATCAGAAAACAAAAATAAA Right flanking sequence: Indices 611671 -- 612170 AAATGATGATATTGATGATGATAAAAAGGAAACAGATAAAACACATTTGGAAGAAGAGGAAAATG AAATAATTGAAAAGGAATTTAGTGATAAGAAAAAGAATGGTAAAAATAAAGATACTAAGAAGGAA AAAAGTAAAGATACTGAGAAGGAAAAAAGTAAAGATATAGAGAAGGAAAAAAGTAAAGATAAAGA GAAGGAAAAAAGTAAAGATAAAGAGAAGGAAAAAGGTAAAGATAAAGAGAAGGAAAAAAGTAAAG ATATTGAGAAGGAAAAAGAAAAAGATAAAGATATAGAGAAGGAAAAAAGTAAAGATACTGCGAAG GAAAAAGAAAAAGATAAAGATATAGAGAAAGAAAAAAGCAAAGATATGGAAAAATTAAAGAATAA ACAAAATGATGAAAAAAAGAAAGACGATAACGAAAAGAAAAAAAATGATAAACAAGATATACATG ATGATAATGATGATGAAAATGATATGGAAGAAATAGAAGAAAATG Found at i:611677 original size:30 final size:30 Alignment explanation
Indices: 611643--611702 Score: 92 Period size: 30 Copynumber: 2.0 Consensus size: 30 611633 GATGAAGTTG * * 611643 ATGATGATGTTGAAGAAGATAAAAATGAAA 1 ATGATGATATTGAAGAAGATAAAAAGGAAA * * 611673 ATGATGATATTGATGATGATAAAAAGGAAA 1 ATGATGATATTGAAGAAGATAAAAAGGAAA 611703 CAGATAAAAC Statistics Matches: 26, Mismatches: 4, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 30 26 1.00 ACGTcount: A:0.52, C:0.00, G:0.23, T:0.25 Consensus pattern (30 bp): ATGATGATATTGAAGAAGATAAAAAGGAAA Left flanking sequence: Indices 611143 -- 611642 AAAAGAAAAAGATGATAATAATAATAATAATGGAACTAAGCAAATTGAAGAGAAAAATAAAATCA ATAAAAGCGATTTGCATAGACAAAATGAATTAAATTTACAAAGTGGAAAAAATGAACAAGACATA AATAAAAATGAAAAAGGAAAACAGGATATCTCTAATTCCAATGCAGAGAACAAAAAGGATGTAAA AGAAGGAGTGAAAGAATTAGAAGAAAAGAAAAAAGAAGAGAAAATTTCAGATGATCATAAAGTAG AGGAAAACAAAAAATCTGATGACCATAAAGTTGAGGAAAACAAAAAATCTGATGATCATAAAGTT GAGGAAAACAAAAAATCTGATGATCATAAAATAGAAGAAGTAAAAAAAGTAGAGGAACATGAAGA AGACGAAGAAGAGGATAAGAAAGAAAAAAAATCAGAAAACAAAAATAAAGATGAAAATAAAGATG AAAATGATGAAGATAATGATGAAATAAGTGATGAAGATGAAGTTG Right flanking sequence: Indices 611703 -- 612202 CAGATAAAACACATTTGGAAGAAGAGGAAAATGAAATAATTGAAAAGGAATTTAGTGATAAGAAA AAGAATGGTAAAAATAAAGATACTAAGAAGGAAAAAAGTAAAGATACTGAGAAGGAAAAAAGTAA AGATATAGAGAAGGAAAAAAGTAAAGATAAAGAGAAGGAAAAAAGTAAAGATAAAGAGAAGGAAA AAGGTAAAGATAAAGAGAAGGAAAAAAGTAAAGATATTGAGAAGGAAAAAGAAAAAGATAAAGAT ATAGAGAAGGAAAAAAGTAAAGATACTGCGAAGGAAAAAGAAAAAGATAAAGATATAGAGAAAGA AAAAAGCAAAGATATGGAAAAATTAAAGAATAAACAAAATGATGAAAAAAAGAAAGACGATAACG AAAAGAAAAAAAATGATAAACAAGATATACATGATGATAATGATGATGAAAATGATATGGAAGAA ATAGAAGAAAATGATGACGAAGAAGATGAGGATGAAGACATGGAA Found at i:612026 original size:24 final size:24 Alignment explanation
Indices: 611777--612042 Score: 317 Period size: 24 Copynumber: 10.6 Consensus size: 24 611767 AAAGAATGGT * 611777 AAAAATAAAGATACTA-AGAAGGAA 1 AAAAGTAAAGATA-TAGAGAAGGAA ** 611801 AAAAGTAAAGATACTGAGAAGGAA 1 AAAAGTAAAGATATAGAGAAGGAA 611825 AAAAGTAAAGATATAGAGAAGGAA 1 AAAAGTAAAGATATAGAGAAGGAA * 611849 AAAAGTAAAGATAAAGAGAAGGAA 1 AAAAGTAAAGATATAGAGAAGGAA * 611873 AAAAGTAAAGATAAAGAGAAGGAA 1 AAAAGTAAAGATATAGAGAAGGAA * * 611897 AAAGGTAAAGATAAAGAGAAGGAA 1 AAAAGTAAAGATATAGAGAAGGAA * 611921 AAAAGTAAAGATATTGAGAAGGAAAAAGA 1 AAAAGTAAAGATATAGAGAAGG----A-A 611950 AAAAGATAAAGATATAGAGAAGGAA 1 AAAAG-TAAAGATATAGAGAAGGAA * ** 611975 AAAAGTAAAGATACTGCGAAGGAAAAAGA 1 AAAAGTAAAGATA-T-AG-A-GAAGGA-A * 612004 AAAAGATAAAGATATAGAGAAAGAA 1 AAAAG-TAAAGATATAGAGAAGGAA * 612029 AAAAGCAAAGATAT 1 AAAAGTAAAGATAT 612043 GGAAAAATTA Statistics Matches: 212, Mismatches: 17, Indels: 26 0.83 0.07 0.10 Matches are distributed among these distances: 24 147 0.69 25 13 0.06 26 7 0.03 27 2 0.01 28 6 0.03 29 13 0.06 30 24 0.11 ACGTcount: A:0.64, C:0.02, G:0.23, T:0.11 Consensus pattern (24 bp): AAAAGTAAAGATATAGAGAAGGAA Left flanking sequence: Indices 611277 -- 611776 AAAATGAAAAAGGAAAACAGGATATCTCTAATTCCAATGCAGAGAACAAAAAGGATGTAAAAGAA GGAGTGAAAGAATTAGAAGAAAAGAAAAAAGAAGAGAAAATTTCAGATGATCATAAAGTAGAGGA AAACAAAAAATCTGATGACCATAAAGTTGAGGAAAACAAAAAATCTGATGATCATAAAGTTGAGG AAAACAAAAAATCTGATGATCATAAAATAGAAGAAGTAAAAAAAGTAGAGGAACATGAAGAAGAC GAAGAAGAGGATAAGAAAGAAAAAAAATCAGAAAACAAAAATAAAGATGAAAATAAAGATGAAAA TGATGAAGATAATGATGAAATAAGTGATGAAGATGAAGTTGATGATGATGTTGAAGAAGATAAAA ATGAAAATGATGATATTGATGATGATAAAAAGGAAACAGATAAAACACATTTGGAAGAAGAGGAA AATGAAATAATTGAAAAGGAATTTAGTGATAAGAAAAAGAATGGT Right flanking sequence: Indices 612043 -- 612542 GGAAAAATTAAAGAATAAACAAAATGATGAAAAAAAGAAAGACGATAACGAAAAGAAAAAAAATG ATAAACAAGATATACATGATGATAATGATGATGAAAATGATATGGAAGAAATAGAAGAAAATGAT GACGAAGAAGATGAGGATGAAGACATGGAAAACAAAAAAAAAAAAAAAAAAGGAAAAAATGGAAA TGAAAATGGAAATGAAAATGGAAGTGAAAATGGAAATGAAAATGGAAATGAAAATGGAAATGAAA ATGAAAATAAAAATGAAAGTGAAAATGAAAATGAAAACGAAAATGAAAACGAAAATGGAAACGAA AATGAAAACGAAAAAGAAAACGAAAAAGATAAAAATATTAAAGAGATTGAAAATGTAACAAATGC AAACAAGGAAAACTATGAAAAAATAAATAAAAATTCTGAAATAACAATAACAAAATCAAATATAG ATATATATAATAATAATAGGAATAATGATATTGATAAAGTAAATA Found at i:612061 original size:48 final size:48 Alignment explanation
Indices: 611799--612106 Score: 266 Period size: 48 Copynumber: 6.2 Consensus size: 48 611789 ACTAAGAAGG * ** * * ** 611799 AAAAAAGTAAAGATACTGAGAAGGAAAAAAGTAAAGATATAGAGAAGG 1 AAAAAAATAAAGATAAAGAGAAGGAAAAAAGTAAAGATATGGAAAAAA * ** * ** 611847 AAAAAAGTAAAGATAAAGAGAAGGAAAAAAGTAAAGATAAAGAGAAGG 1 AAAAAAATAAAGATAAAGAGAAGGAAAAAAGTAAAGATATGGAAAAAA ** 611895 AAAAAGGTAAAGATAAAGAGAAGGAAAAAAGTAAAGATATTGAGAAGGAAAA 1 AAAAAAATAAAGATAAAGAGAAGGAAAAAAGTAAAGATA-TG-GAA--AAAA * 611947 AGAAAAAGATAAAGATATAGAGAAGGAAAAAAGTAAAGATACTGCGAAGGAAAA 1 A-AAAAA-ATAAAGATAAAGAGAAGGAAAAAAGTAAAGATA-TG-GAA--AAAA * * * * 612001 AGAAAAAGATAAAGATATAGAGAAAGAAAAAAGCAAAGATATGGAAAAAT 1 A-AAAAA-ATAAAGATAAAGAGAAGGAAAAAAGTAAAGATATGGAAAAAA * * * * * * * ** * 612051 TAAAGAATAAACA-AAA-TGATGAAAAAAAGAAAGACGATAACGAAAAGA 1 AAAAAAATAAAGATAAAGAGAAGGAAAAAAGTAA-A-GATATGGAAAAAA 612099 AAAAAAAT 1 AAAAAAAT 612107 GATAAACAAG Statistics Matches: 220, Mismatches: 32, Indels: 16 0.82 0.12 0.06 Matches are distributed among these distances: 46 11 0.05 47 3 0.01 48 104 0.47 49 4 0.02 50 5 0.02 52 6 0.03 53 6 0.03 54 81 0.37 ACGTcount: A:0.65, C:0.02, G:0.22, T:0.11 Consensus pattern (48 bp): AAAAAAATAAAGATAAAGAGAAGGAAAAAAGTAAAGATATGGAAAAAA Left flanking sequence: Indices 611299 -- 611798 TATCTCTAATTCCAATGCAGAGAACAAAAAGGATGTAAAAGAAGGAGTGAAAGAATTAGAAGAAA AGAAAAAAGAAGAGAAAATTTCAGATGATCATAAAGTAGAGGAAAACAAAAAATCTGATGACCAT AAAGTTGAGGAAAACAAAAAATCTGATGATCATAAAGTTGAGGAAAACAAAAAATCTGATGATCA TAAAATAGAAGAAGTAAAAAAAGTAGAGGAACATGAAGAAGACGAAGAAGAGGATAAGAAAGAAA AAAAATCAGAAAACAAAAATAAAGATGAAAATAAAGATGAAAATGATGAAGATAATGATGAAATA AGTGATGAAGATGAAGTTGATGATGATGTTGAAGAAGATAAAAATGAAAATGATGATATTGATGA TGATAAAAAGGAAACAGATAAAACACATTTGGAAGAAGAGGAAAATGAAATAATTGAAAAGGAAT TTAGTGATAAGAAAAAGAATGGTAAAAATAAAGATACTAAGAAGG Right flanking sequence: Indices 612107 -- 612606 GATAAACAAGATATACATGATGATAATGATGATGAAAATGATATGGAAGAAATAGAAGAAAATGA TGACGAAGAAGATGAGGATGAAGACATGGAAAACAAAAAAAAAAAAAAAAAAGGAAAAAATGGAA ATGAAAATGGAAATGAAAATGGAAGTGAAAATGGAAATGAAAATGGAAATGAAAATGGAAATGAA AATGAAAATAAAAATGAAAGTGAAAATGAAAATGAAAACGAAAATGAAAACGAAAATGGAAACGA AAATGAAAACGAAAAAGAAAACGAAAAAGATAAAAATATTAAAGAGATTGAAAATGTAACAAATG CAAACAAGGAAAACTATGAAAAAATAAATAAAAATTCTGAAATAACAATAACAAAATCAAATATA GATATATATAATAATAATAGGAATAATGATATTGATAAAGTAAATAACCATATATTCACAAATCA ACAAAAAAAACACAATCTTCATAATGAACAAAATAAATTTAATGA Found at i:612076 original size:28 final size:29 Alignment explanation
Indices: 612021--612084 Score: 77 Period size: 28 Copynumber: 2.2 Consensus size: 29 612011 AAAGATATAG * 612021 AGAAAGAAAAAAGCAAAGATATGGAAAAA 1 AGAAAGAAAAAAGCAAAGATATGAAAAAA ** * 612050 TTAAAGAATAAA-CAAA-ATGATGAAAAAA 1 AGAAAGAAAAAAGCAAAGAT-ATGAAAAAA 612078 AGAAAGA 1 AGAAAGA 612085 CGATAACGAA Statistics Matches: 28, Mismatches: 6, Indels: 3 0.76 0.16 0.08 Matches are distributed among these distances: 27 2 0.07 28 17 0.61 29 9 0.32 ACGTcount: A:0.69, C:0.03, G:0.17, T:0.11 Consensus pattern (29 bp): AGAAAGAAAAAAGCAAAGATATGAAAAAA Left flanking sequence: Indices 611521 -- 612020 GGAACATGAAGAAGACGAAGAAGAGGATAAGAAAGAAAAAAAATCAGAAAACAAAAATAAAGATG AAAATAAAGATGAAAATGATGAAGATAATGATGAAATAAGTGATGAAGATGAAGTTGATGATGAT GTTGAAGAAGATAAAAATGAAAATGATGATATTGATGATGATAAAAAGGAAACAGATAAAACACA TTTGGAAGAAGAGGAAAATGAAATAATTGAAAAGGAATTTAGTGATAAGAAAAAGAATGGTAAAA ATAAAGATACTAAGAAGGAAAAAAGTAAAGATACTGAGAAGGAAAAAAGTAAAGATATAGAGAAG GAAAAAAGTAAAGATAAAGAGAAGGAAAAAAGTAAAGATAAAGAGAAGGAAAAAGGTAAAGATAA AGAGAAGGAAAAAAGTAAAGATATTGAGAAGGAAAAAGAAAAAGATAAAGATATAGAGAAGGAAA AAAGTAAAGATACTGCGAAGGAAAAAGAAAAAGATAAAGATATAG Right flanking sequence: Indices 612085 -- 612584 CGATAACGAAAAGAAAAAAAATGATAAACAAGATATACATGATGATAATGATGATGAAAATGATA TGGAAGAAATAGAAGAAAATGATGACGAAGAAGATGAGGATGAAGACATGGAAAACAAAAAAAAA AAAAAAAAAGGAAAAAATGGAAATGAAAATGGAAATGAAAATGGAAGTGAAAATGGAAATGAAAA TGGAAATGAAAATGGAAATGAAAATGAAAATAAAAATGAAAGTGAAAATGAAAATGAAAACGAAA ATGAAAACGAAAATGGAAACGAAAATGAAAACGAAAAAGAAAACGAAAAAGATAAAAATATTAAA GAGATTGAAAATGTAACAAATGCAAACAAGGAAAACTATGAAAAAATAAATAAAAATTCTGAAAT AACAATAACAAAATCAAATATAGATATATATAATAATAATAGGAATAATGATATTGATAAAGTAA ATAACCATATATTCACAAATCAACAAAAAAAACACAATCTTCATA Found at i:612110 original size:21 final size:21 Alignment explanation
Indices: 612071--612111 Score: 54 Period size: 21 Copynumber: 2.0 Consensus size: 21 612061 ACAAAATGAT * * 612071 GAAAAAAAGAAAGACGATAAC 1 GAAAAAAAAAAAAACGATAAC * * 612092 GAAAAGAAAAAAAATGATAA 1 GAAAAAAAAAAAAACGATAA 612112 ACAAGATATA Statistics Matches: 16, Mismatches: 4, Indels: 0 0.80 0.20 0.00 Matches are distributed among these distances: 21 16 1.00 ACGTcount: A:0.71, C:0.05, G:0.17, T:0.07 Consensus pattern (21 bp): GAAAAAAAAAAAAACGATAAC Left flanking sequence: Indices 611571 -- 612070 ACAAAAATAAAGATGAAAATAAAGATGAAAATGATGAAGATAATGATGAAATAAGTGATGAAGAT GAAGTTGATGATGATGTTGAAGAAGATAAAAATGAAAATGATGATATTGATGATGATAAAAAGGA AACAGATAAAACACATTTGGAAGAAGAGGAAAATGAAATAATTGAAAAGGAATTTAGTGATAAGA AAAAGAATGGTAAAAATAAAGATACTAAGAAGGAAAAAAGTAAAGATACTGAGAAGGAAAAAAGT AAAGATATAGAGAAGGAAAAAAGTAAAGATAAAGAGAAGGAAAAAAGTAAAGATAAAGAGAAGGA AAAAGGTAAAGATAAAGAGAAGGAAAAAAGTAAAGATATTGAGAAGGAAAAAGAAAAAGATAAAG ATATAGAGAAGGAAAAAAGTAAAGATACTGCGAAGGAAAAAGAAAAAGATAAAGATATAGAGAAA GAAAAAAGCAAAGATATGGAAAAATTAAAGAATAAACAAAATGAT Right flanking sequence: Indices 612112 -- 612611 ACAAGATATACATGATGATAATGATGATGAAAATGATATGGAAGAAATAGAAGAAAATGATGACG AAGAAGATGAGGATGAAGACATGGAAAACAAAAAAAAAAAAAAAAAAGGAAAAAATGGAAATGAA AATGGAAATGAAAATGGAAGTGAAAATGGAAATGAAAATGGAAATGAAAATGGAAATGAAAATGA AAATAAAAATGAAAGTGAAAATGAAAATGAAAACGAAAATGAAAACGAAAATGGAAACGAAAATG AAAACGAAAAAGAAAACGAAAAAGATAAAAATATTAAAGAGATTGAAAATGTAACAAATGCAAAC AAGGAAAACTATGAAAAAATAAATAAAAATTCTGAAATAACAATAACAAAATCAAATATAGATAT ATATAATAATAATAGGAATAATGATATTGATAAAGTAAATAACCATATATTCACAAATCAACAAA AAAAACACAATCTTCATAATGAACAAAATAAATTTAATGAAACAT Found at i:612181 original size:15 final size:15 Alignment explanation
Indices: 612161--612195 Score: 49 Period size: 15 Copynumber: 2.3 Consensus size: 15 612151 GGAAGAAATA * 612161 GAAGAAAATGATGAC 1 GAAGAAAATGAGGAC * * 612176 GAAGAAGATGAGGAT 1 GAAGAAAATGAGGAC 612191 GAAGA 1 GAAGA 612196 CATGGAAAAC Statistics Matches: 17, Mismatches: 3, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 15 17 1.00 ACGTcount: A:0.51, C:0.03, G:0.34, T:0.11 Consensus pattern (15 bp): GAAGAAAATGAGGAC Left flanking sequence: Indices 611661 -- 612160 ATAAAAATGAAAATGATGATATTGATGATGATAAAAAGGAAACAGATAAAACACATTTGGAAGAA GAGGAAAATGAAATAATTGAAAAGGAATTTAGTGATAAGAAAAAGAATGGTAAAAATAAAGATAC TAAGAAGGAAAAAAGTAAAGATACTGAGAAGGAAAAAAGTAAAGATATAGAGAAGGAAAAAAGTA AAGATAAAGAGAAGGAAAAAAGTAAAGATAAAGAGAAGGAAAAAGGTAAAGATAAAGAGAAGGAA AAAAGTAAAGATATTGAGAAGGAAAAAGAAAAAGATAAAGATATAGAGAAGGAAAAAAGTAAAGA TACTGCGAAGGAAAAAGAAAAAGATAAAGATATAGAGAAAGAAAAAAGCAAAGATATGGAAAAAT TAAAGAATAAACAAAATGATGAAAAAAAGAAAGACGATAACGAAAAGAAAAAAAATGATAAACAA GATATACATGATGATAATGATGATGAAAATGATATGGAAGAAATA Right flanking sequence: Indices 612196 -- 612695 CATGGAAAACAAAAAAAAAAAAAAAAAAGGAAAAAATGGAAATGAAAATGGAAATGAAAATGGAA GTGAAAATGGAAATGAAAATGGAAATGAAAATGGAAATGAAAATGAAAATAAAAATGAAAGTGAA AATGAAAATGAAAACGAAAATGAAAACGAAAATGGAAACGAAAATGAAAACGAAAAAGAAAACGA AAAAGATAAAAATATTAAAGAGATTGAAAATGTAACAAATGCAAACAAGGAAAACTATGAAAAAA TAAATAAAAATTCTGAAATAACAATAACAAAATCAAATATAGATATATATAATAATAATAGGAAT AATGATATTGATAAAGTAAATAACCATATATTCACAAATCAACAAAAAAAACACAATCTTCATAA TGAACAAAATAAATTTAATGAAACATTAAATGTATCAACCAATCATAAAAATCATTATGAGGTAA TAAAAAAAAAAAAAAAAAAAAAAAAAAATGAATTTTATTTTATTT Found at i:612194 original size:12 final size:12 Alignment explanation
Indices: 612170--612195 Score: 38 Period size: 12 Copynumber: 2.2 Consensus size: 12 612160 AGAAGAAAAT 612170 GATGACGAAGAA 1 GATGACGAAGAA * * 612182 GATGAGGATGAA 1 GATGACGAAGAA 612194 GA 1 GA 612196 CATGGAAAAC Statistics Matches: 12, Mismatches: 2, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 12 12 1.00 ACGTcount: A:0.46, C:0.04, G:0.38, T:0.12 Consensus pattern (12 bp): GATGACGAAGAA Left flanking sequence: Indices 611670 -- 612169 AAAATGATGATATTGATGATGATAAAAAGGAAACAGATAAAACACATTTGGAAGAAGAGGAAAAT GAAATAATTGAAAAGGAATTTAGTGATAAGAAAAAGAATGGTAAAAATAAAGATACTAAGAAGGA AAAAAGTAAAGATACTGAGAAGGAAAAAAGTAAAGATATAGAGAAGGAAAAAAGTAAAGATAAAG AGAAGGAAAAAAGTAAAGATAAAGAGAAGGAAAAAGGTAAAGATAAAGAGAAGGAAAAAAGTAAA GATATTGAGAAGGAAAAAGAAAAAGATAAAGATATAGAGAAGGAAAAAAGTAAAGATACTGCGAA GGAAAAAGAAAAAGATAAAGATATAGAGAAAGAAAAAAGCAAAGATATGGAAAAATTAAAGAATA AACAAAATGATGAAAAAAAGAAAGACGATAACGAAAAGAAAAAAAATGATAAACAAGATATACAT GATGATAATGATGATGAAAATGATATGGAAGAAATAGAAGAAAAT Right flanking sequence: Indices 612196 -- 612695 CATGGAAAACAAAAAAAAAAAAAAAAAAGGAAAAAATGGAAATGAAAATGGAAATGAAAATGGAA GTGAAAATGGAAATGAAAATGGAAATGAAAATGGAAATGAAAATGAAAATAAAAATGAAAGTGAA AATGAAAATGAAAACGAAAATGAAAACGAAAATGGAAACGAAAATGAAAACGAAAAAGAAAACGA AAAAGATAAAAATATTAAAGAGATTGAAAATGTAACAAATGCAAACAAGGAAAACTATGAAAAAA TAAATAAAAATTCTGAAATAACAATAACAAAATCAAATATAGATATATATAATAATAATAGGAAT AATGATATTGATAAAGTAAATAACCATATATTCACAAATCAACAAAAAAAACACAATCTTCATAA TGAACAAAATAAATTTAATGAAACATTAAATGTATCAACCAATCATAAAAATCATTATGAGGTAA TAAAAAAAAAAAAAAAAAAAAAAAAAAATGAATTTTATTTTATTT Found at i:614682 original size:12 final size:12 Alignment explanation
Indices: 614647--614684 Score: 55 Period size: 12 Copynumber: 3.2 Consensus size: 12 614637 AAATAAATGA * * 614647 ATACATACATAC 1 ATACATATATAT 614659 ATACATATATAT 1 ATACATATATAT * 614671 ATATATATATAT 1 ATACATATATAT 614683 AT 1 AT 614685 TATTTCTTTT Statistics Matches: 23, Mismatches: 3, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 12 23 1.00 ACGTcount: A:0.50, C:0.11, G:0.00, T:0.39 Consensus pattern (12 bp): ATACATATATAT Left flanking sequence: Indices 614147 -- 614646 ATATGTGAACCTTTCATTAACGAACATAATGGAACCTGTCGACCCGTTAGTTATATATATATATA TATATATATATATATATTTTTTTTTTTATAATGAAAGAGTTTCCTCACACATATTTATGATTCCA AATTTATATTACTTTTGTAATTACATATTTGTTATTTTACTTTTTTTAGGATTTTCATCACTGTG CCATAGCAGAACCTGAGAGAAATAAAAAATATTCAATATATGCAACGGTATCTATAAATATAAAA ATATTTAAAAAAAAAAAAAAAGGAAACAAATAAGAAGAATATAAATATGTATATTAATAAATAAT AAAATATACACCTATTTTTATATAAACTTTTCTTTTATATTATTAAATATTTTTTTTTCTAGGAC GATGTACATTTTGTACCTTCCCAATTTGTTACTATAAAAGTAAGACATCATATTTTTCGATATTT AAATTGTTAAATTATTTAAAAGCTATATGATGAATAAATAAATGA Right flanking sequence: Indices 614685 -- 615184 TATTTCTTTTAGGGATATAATTTACATGAATGTTTACAATTTTTGGTCGTCAAAAAGAATTCCAC ATGCGGGTAAATAAACCATATACATAAATATATGCTTAATTAAATGTTTATTATTTTATATTTTA TATTTTTATATTTTATATTTTTATATTTTATATTTTTATCTTTTATATTTTAGACCCATGACAAT TGAAAAAAACTTAATGGAGTCTGAAGAAATTTTAAAAGAGCCTGTTTTAAGCAAAGTTTTATATA ACGAAATTTTATTTGAAAATATAAAAGTAAGGAAAATAAAATAAAGAGATATTTTTTGTTTATAT CATTTTGTAGTAATAAATTGTTCTAATATTATTATCATAATGAAATTTTTTTCTTTTAATTTTTT GTTTTAATTTTTTGTTTTAATTTTTTGTTTTAATTTTTTGTTTTAATTTTTTGTTTTAATTTTTT GTTTTAATTTTTTGTTTTAATTTTTAATTTTTTTTTTTTAGATAT Found at i:614821 original size:15 final size:15 Alignment explanation
Indices: 614803--614865 Score: 119 Period size: 15 Copynumber: 4.2 Consensus size: 15 614793 ATGTTTATTA 614803 TTTTATATTTTATAT 1 TTTTATATTTTATAT 614818 TTTTATATTTTATAT 1 TTTTATATTTTATAT 614833 TTTTATATTTTATAT 1 TTTTATATTTTATAT * 614848 TTTTATCTTTTATAT 1 TTTTATATTTTATAT 614863 TTT 1 TTT 614866 AGACCCATGA Statistics Matches: 47, Mismatches: 1, Indels: 0 0.98 0.02 0.00 Matches are distributed among these distances: 15 47 1.00 ACGTcount: A:0.24, C:0.02, G:0.00, T:0.75 Consensus pattern (15 bp): TTTTATATTTTATAT Left flanking sequence: Indices 614303 -- 614802 ATTTGTTATTTTACTTTTTTTAGGATTTTCATCACTGTGCCATAGCAGAACCTGAGAGAAATAAA AAATATTCAATATATGCAACGGTATCTATAAATATAAAAATATTTAAAAAAAAAAAAAAAGGAAA CAAATAAGAAGAATATAAATATGTATATTAATAAATAATAAAATATACACCTATTTTTATATAAA CTTTTCTTTTATATTATTAAATATTTTTTTTTCTAGGACGATGTACATTTTGTACCTTCCCAATT TGTTACTATAAAAGTAAGACATCATATTTTTCGATATTTAAATTGTTAAATTATTTAAAAGCTAT ATGATGAATAAATAAATGAATACATACATACATACATATATATATATATATATATATTATTTCTT TTAGGGATATAATTTACATGAATGTTTACAATTTTTGGTCGTCAAAAAGAATTCCACATGCGGGT AAATAAACCATATACATAAATATATGCTTAATTAAATGTTTATTA Right flanking sequence: Indices 614866 -- 615365 AGACCCATGACAATTGAAAAAAACTTAATGGAGTCTGAAGAAATTTTAAAAGAGCCTGTTTTAAG CAAAGTTTTATATAACGAAATTTTATTTGAAAATATAAAAGTAAGGAAAATAAAATAAAGAGATA TTTTTTGTTTATATCATTTTGTAGTAATAAATTGTTCTAATATTATTATCATAATGAAATTTTTT TCTTTTAATTTTTTGTTTTAATTTTTTGTTTTAATTTTTTGTTTTAATTTTTTGTTTTAATTTTT TGTTTTAATTTTTTGTTTTAATTTTTTGTTTTAATTTTTAATTTTTTTTTTTTAGATATCTACAC CAGGAGAATATAATATATGTTTGGCTCAATTTTATCAAGACCCAGAGAAGGATGATATACTATCA GAAAATAGTTCAAATAAATATAAGAAAAAAAAGAAAAACGATATGAAAGTTTTAGGAATAGACAC CATTGGTACGTTGTATGTATTACCGTTACATGAAAAACAAAAAAC Found at