TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: arm_2R assembled 2004-3-18 md5checksum:9f4c91a2cad3c68020b05fff1adf27ee Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 20766785 ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28 Warning! 200 characters in sequence are not A, C, G, or T Found at i: i:10639759 original size:6 final size:6 Alignment explanation
Indices: 10639748--10639760 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 10639738 TGAAACATGT 10639748 TTAAAA TTAAAA T 1 TTAAAA TTAAAA T 10639761 ACGACAGACA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38 Consensus pattern (6 bp): TTAAAA Left flanking sequence: Indices 10639248 -- 10639747 CTGTCAACCATAACGAAGCCCTATCAATTCCTCAAAATGTTTGCCCCATCTCAGAGAAACCCCTT AATGATTTTAATATTCAGCTCCTGTTCAAAATAACCCCAGATACAAATAACGCCACACTGATCCC GTTTAAACACAAACTTAGGAGGGAATTCTGTAAACCCAATTTTCAGTATGACGACGTAGTTTGCA TTCTTAGGCAGTCGTTAAAACCAAACAAGACATGCGCGGTATTTGCCCCCGACCACATTTTTCAA ATGGTGGAACAAGCCTACCAAACCTACTTCTCAGCCCACAGTCAATTTAAACTCATTAGATGTTT GATCTTCCTCCCCGAAATTACTGATAGTACGGAGATCGAAAAAATTATAACCGACTATCACTATA ATAGTAACCATCGAGGGATCGATGAAACATATTTACACATAAAACGACAACAGTTCTTCCCACAT ATGAAGGAGAGAATAACTCAGTTAATTCGAAAATGTGAAACATGT Right flanking sequence: Indices 10639761 -- 10640260 ACGACAGACAACCTCAAAAGATCACTTACCAAATATCCGAACTACCTTCAAAACCGTTGGACATC TTACATATAGACATTTATACTATTAACAAAAATTATAACCTTACTATTATCGATAAATTTTCTAA ATTTGCGGCTGCCTACCCTATAACTAATAGGAATTGCATTAACGTAGTTAAAGCCTTAAAACATT TCATTTCCCAATTTGGTATTCCCAAAAAGCTGATCTATGATCAGGGAGCAGAATTCGCTAGCGAT ATGTTCAATAAGTTCTGCACTCAATTTAACATTGACCTACACGTTACGTCCTTTCAACAATCCTC TAGTAACTCTCCCGTTGAACGGCTTCACTCGACACTAACTGAGATTTACAGAATAATACTTGACG TCAGGAAACAACAGAAACTCAGTAGCGAGCATGACGAGATAATGTCCGAAACCCTAATCACATAT AATAACGCTATTCATTCTGCAACTAAACATACCCCCTTTGAACTA Found at i:10641600 original size:3 final size:3 Alignment explanation
Indices: 10641585--10641600 Score: 25 Period size: 3 Copynumber: 5.3 Consensus size: 3 10641575 TACCTAGCTT * 10641585 ATA ATA TTA ATA ATA A 1 ATA ATA ATA ATA ATA A 10641601 GAAATTTCAT Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 3 11 1.00 ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38 Consensus pattern (3 bp): ATA Left flanking sequence: Indices 10641085 -- 10641584 AAAACAAGTAATGTTTAACAACGAAATACTTATCCGGTTCGAAAATATCACGGACCATATAAATA ATGAACAAATTTTGATAAGTAAATTCTTTGATACCTCACAAAACAAAATATACAAACACTTAAAC TTACAAGATACCCTTCTGGAAGAAATACAATATTTAAATAGGATTAATTATAACATAGAATTATT CATTAACCACCTAAACGACATAACAGAAAGTATGCTATTGGCGAAAATAAATATAATTCCCAAGT TCATCCTAAATGAACAAGAAATGGATAAAATAAAAACAATACTGGAAAAACAAAATATCACAGTC AAAAATGAACAAAGTATATACAATTTCCTACAAATGAATACACTAAATTACGAACAAAAGATTAT TTTTAATATCAAAGTCCCAATTTTTAAACAACCTTTTCATACCCTCGCCAGACTAGTTCCATTAC CAATAAATAACACATATTTTGTAATAACCCCAAATTACCTAGCTT Right flanking sequence: Indices 10641601 -- 10642100 GAAATTTCATATGACCCGTAAATGCCCCAAACTGGATAATACATTCTTGTGCGACGAGAACTTCT ACGTTGATACACCACAGAACAACACATGCCTGGAACACCTTTTGAACGGAGAAAACAGTTCCTGC GATGTACGGGAAACCGGCCCCATCACCGACGTGTTCGAGGCAGAGAGAGGTTACATCTTCGCATT CAACGTGAACAAACTGAAGGTATCCCTAACAAACGGCTCCGAGCTCTCAATAATGGGGTCAGCCA TCATCAGATACATTAACGAAACAATACAGATTAACGGTATCGATTACGACGGCACGGTTGACACG TTCCCTGAACAGACGGATTTTGATCTTCCCCCCATGCGAAAAGTAACTAGGAATACCACTATTAC GGTACTAAGCCTAGAAAAACTGCACCTCGAAGCCACCCAAACAATGGATAAAATCCTGGCCGTCC ATCACAATACTATACAGCACACCTGGACACTCTACACTCTGCTCG Found at i:10642793 original size:3 final size:3 Alignment explanation
Indices: 10642778--10642793 Score: 25 Period size: 3 Copynumber: 5.3 Consensus size: 3 10642768 ACATCACCAG * 10642778 CAA CAA AAA CAA CAA C 1 CAA CAA CAA CAA CAA C 10642794 GACGCCAACC Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 3 11 1.00 ACGTcount: A:0.69, C:0.31, G:0.00, T:0.00 Consensus pattern (3 bp): CAA Left flanking sequence: Indices 10642278 -- 10642777 AAACAAATCATCGGACACTCAACCGGGAAGACGGCAACTGGAACACCGCATCCGGCCGAATGCTG ACATTCCGGCCGAATGCTGACATTACACAAAAGTCGCACTGCAACATTGTCCCCAGCTAGCCAGC CACATGCCGAGTCGGCATGTTCATTATGCTTACAATTAAGAACCTATGTACTTATGTATAAGACG AAAACGGAGGACTCGAGTAGCCACTCTCTGACAATAAACTTCATACTGATTTTGAACTTCAAGAA AGTCAGTCGTATTCTTTATTGGAAATCTTCACACTACAACTATCTGCTGAAACTTAAAAACCTTC ATACATTTACACATCATATCTTCACAAAAGGCTCCACCCTCGATCACGGACTTAACTCACGCCCT CCTTCTGGCCATATACCATACACCAAACCCAAAAAAGCCTCTGCCCCGCTAATGAACGCAACAGT CGCAGTCACCTCCTCATCCTTCTCTACATCCACCGACATCACCAG Right flanking sequence: Indices 10642794 -- 10643293 GACGCCAACCCACATGCACGAAGATCATTACCAACCCGAGCGGCGCATAAAAAAAAACGTAAGCC AGCAGCAACGACAACAACAACATCGAAATCAAGTTGCGCCGTCGCAAACGCAAACTGACCTGGTC CGAAAATTCTACTCTGAAACCACCCTACACGGTTTCCCACTCCCACATTGCACAGTGGGCAGAGT TGAGCAATTGCCATGTTTAAATGCCGGAACTCTGTGCTTGGTTATCAGTGGTGTTTCTGAAATAA ATAAATAAATTGTAAATCAGGCAGCTCGAAAAACTTTATAATAAAATGATGGTCATTTGCCAAGA ACTTGAACTATTGTAGTGAAACGTGAAATGTTTATTTTTCAATATGTTTTCATTGACAGTCGGTA CAAATTTTCCACTGTGCGACGCCGGCCCACACACAATAACTGAAAAGCGGGAGAGAGACAGCAGA AGCAACAACAAGCGACTTGAATGAGCGGGTGGCTTGCCTTGCCGC Found at i:10642875 original size:3 final size:3 Alignment explanation
Indices: 10642864--10642880 Score: 27 Period size: 3 Copynumber: 5.7 Consensus size: 3 10642854 AAGCCAGCAG * 10642864 CAA CGA CAA CAA CAA CA 1 CAA CAA CAA CAA CAA CA 10642881 TCGAAATCAA Statistics Matches: 12, Mismatches: 2, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 3 12 1.00 ACGTcount: A:0.59, C:0.35, G:0.06, T:0.00 Consensus pattern (3 bp): CAA Left flanking sequence: Indices 10642364 -- 10642863 ATTACACAAAAGTCGCACTGCAACATTGTCCCCAGCTAGCCAGCCACATGCCGAGTCGGCATGTT CATTATGCTTACAATTAAGAACCTATGTACTTATGTATAAGACGAAAACGGAGGACTCGAGTAGC CACTCTCTGACAATAAACTTCATACTGATTTTGAACTTCAAGAAAGTCAGTCGTATTCTTTATTG GAAATCTTCACACTACAACTATCTGCTGAAACTTAAAAACCTTCATACATTTACACATCATATCT TCACAAAAGGCTCCACCCTCGATCACGGACTTAACTCACGCCCTCCTTCTGGCCATATACCATAC ACCAAACCCAAAAAAGCCTCTGCCCCGCTAATGAACGCAACAGTCGCAGTCACCTCCTCATCCTT CTCTACATCCACCGACATCACCAGCAACAAAAACAACAACGACGCCAACCCACATGCACGAAGAT CATTACCAACCCGAGCGGCGCATAAAAAAAAACGTAAGCCAGCAG Right flanking sequence: Indices 10642881 -- 10643380 TCGAAATCAAGTTGCGCCGTCGCAAACGCAAACTGACCTGGTCCGAAAATTCTACTCTGAAACCA CCCTACACGGTTTCCCACTCCCACATTGCACAGTGGGCAGAGTTGAGCAATTGCCATGTTTAAAT GCCGGAACTCTGTGCTTGGTTATCAGTGGTGTTTCTGAAATAAATAAATAAATTGTAAATCAGGC AGCTCGAAAAACTTTATAATAAAATGATGGTCATTTGCCAAGAACTTGAACTATTGTAGTGAAAC GTGAAATGTTTATTTTTCAATATGTTTTCATTGACAGTCGGTACAAATTTTCCACTGTGCGACGC CGGCCCACACACAATAACTGAAAAGCGGGAGAGAGACAGCAGAAGCAACAACAAGCGACTTGAAT GAGCGGGTGGCTTGCCTTGCCGCCTGTTTGTTGCAATTTCTCTTTTATGCGATCATTCGTTTGTA AGGTGGCCACTTGCATAGTGGGCTTGAAACATAAATATTGTTTGG Found at i:10642912 original size:6 final size:6 Alignment explanation
Indices: 10642901--10642913 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 10642891 GTTGCGCCGT 10642901 CGCAAA CGCAAA C 1 CGCAAA CGCAAA C 10642914 TGACCTGGTC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.46, C:0.38, G:0.15, T:0.00 Consensus pattern (6 bp): CGCAAA Left flanking sequence: Indices 10642401 -- 10642900 AGCCAGCCACATGCCGAGTCGGCATGTTCATTATGCTTACAATTAAGAACCTATGTACTTATGTA TAAGACGAAAACGGAGGACTCGAGTAGCCACTCTCTGACAATAAACTTCATACTGATTTTGAACT TCAAGAAAGTCAGTCGTATTCTTTATTGGAAATCTTCACACTACAACTATCTGCTGAAACTTAAA AACCTTCATACATTTACACATCATATCTTCACAAAAGGCTCCACCCTCGATCACGGACTTAACTC ACGCCCTCCTTCTGGCCATATACCATACACCAAACCCAAAAAAGCCTCTGCCCCGCTAATGAACG CAACAGTCGCAGTCACCTCCTCATCCTTCTCTACATCCACCGACATCACCAGCAACAAAAACAAC AACGACGCCAACCCACATGCACGAAGATCATTACCAACCCGAGCGGCGCATAAAAAAAAACGTAA GCCAGCAGCAACGACAACAACAACATCGAAATCAAGTTGCGCCGT Right flanking sequence: Indices 10642914 -- 10643413 TGACCTGGTCCGAAAATTCTACTCTGAAACCACCCTACACGGTTTCCCACTCCCACATTGCACAG TGGGCAGAGTTGAGCAATTGCCATGTTTAAATGCCGGAACTCTGTGCTTGGTTATCAGTGGTGTT TCTGAAATAAATAAATAAATTGTAAATCAGGCAGCTCGAAAAACTTTATAATAAAATGATGGTCA TTTGCCAAGAACTTGAACTATTGTAGTGAAACGTGAAATGTTTATTTTTCAATATGTTTTCATTG ACAGTCGGTACAAATTTTCCACTGTGCGACGCCGGCCCACACACAATAACTGAAAAGCGGGAGAG AGACAGCAGAAGCAACAACAAGCGACTTGAATGAGCGGGTGGCTTGCCTTGCCGCCTGTTTGTTG CAATTTCTCTTTTATGCGATCATTCGTTTGTAAGGTGGCCACTTGCATAGTGGGCTTGAAACATA AATATTGTTTGGGGCTAATTTACAGTTTTAACTATCGCTTAAGTA Found at i:10643057 original size:4 final size:4 Alignment explanation
Indices: 10643048--10643063 Score: 32 Period size: 4 Copynumber: 4.0 Consensus size: 4 10643038 GGTGTTTCTG 10643048 AAAT AAAT AAAT AAAT 1 AAAT AAAT AAAT AAAT 10643064 TGTAAATCAG Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 4 12 1.00 ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25 Consensus pattern (4 bp): AAAT Left flanking sequence: Indices 10642548 -- 10643047 ATTCTTTATTGGAAATCTTCACACTACAACTATCTGCTGAAACTTAAAAACCTTCATACATTTAC ACATCATATCTTCACAAAAGGCTCCACCCTCGATCACGGACTTAACTCACGCCCTCCTTCTGGCC ATATACCATACACCAAACCCAAAAAAGCCTCTGCCCCGCTAATGAACGCAACAGTCGCAGTCACC TCCTCATCCTTCTCTACATCCACCGACATCACCAGCAACAAAAACAACAACGACGCCAACCCACA TGCACGAAGATCATTACCAACCCGAGCGGCGCATAAAAAAAAACGTAAGCCAGCAGCAACGACAA CAACAACATCGAAATCAAGTTGCGCCGTCGCAAACGCAAACTGACCTGGTCCGAAAATTCTACTC TGAAACCACCCTACACGGTTTCCCACTCCCACATTGCACAGTGGGCAGAGTTGAGCAATTGCCAT GTTTAAATGCCGGAACTCTGTGCTTGGTTATCAGTGGTGTTTCTG Right flanking sequence: Indices 10643064 -- 10643563 TGTAAATCAGGCAGCTCGAAAAACTTTATAATAAAATGATGGTCATTTGCCAAGAACTTGAACTA TTGTAGTGAAACGTGAAATGTTTATTTTTCAATATGTTTTCATTGACAGTCGGTACAAATTTTCC ACTGTGCGACGCCGGCCCACACACAATAACTGAAAAGCGGGAGAGAGACAGCAGAAGCAACAACA AGCGACTTGAATGAGCGGGTGGCTTGCCTTGCCGCCTGTTTGTTGCAATTTCTCTTTTATGCGAT CATTCGTTTGTAAGGTGGCCACTTGCATAGTGGGCTTGAAACATAAATATTGTTTGGGGCTAATT TACAGTTTTAACTATCGCTTAAGTAATTAATTAATACTGATAATATTTACGAATCAAGTAAATCG TGTTTAAAAACTAAACAAAAATCATTTAATTTTAGTGCCGGAATTAATTATAATTACAATTCTGC AAAAATGCATGTCATTCTGCTTACAGTGTTCGCAAAAGAGTTGTT Found at i:10643421 original size:4 final size:4 Alignment explanation
Indices: 10643407--10643423 Score: 27 Period size: 4 Copynumber: 4.2 Consensus size: 4 10643397 TAACTATCGC * 10643407 TTAA GTAA TTAA TTAA T 1 TTAA TTAA TTAA TTAA T 10643424 ACTGATAATA Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 4 11 1.00 ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47 Consensus pattern (4 bp): TTAA Left flanking sequence: Indices 10642907 -- 10643406 CGCAAACTGACCTGGTCCGAAAATTCTACTCTGAAACCACCCTACACGGTTTCCCACTCCCACAT TGCACAGTGGGCAGAGTTGAGCAATTGCCATGTTTAAATGCCGGAACTCTGTGCTTGGTTATCAG TGGTGTTTCTGAAATAAATAAATAAATTGTAAATCAGGCAGCTCGAAAAACTTTATAATAAAATG ATGGTCATTTGCCAAGAACTTGAACTATTGTAGTGAAACGTGAAATGTTTATTTTTCAATATGTT TTCATTGACAGTCGGTACAAATTTTCCACTGTGCGACGCCGGCCCACACACAATAACTGAAAAGC GGGAGAGAGACAGCAGAAGCAACAACAAGCGACTTGAATGAGCGGGTGGCTTGCCTTGCCGCCTG TTTGTTGCAATTTCTCTTTTATGCGATCATTCGTTTGTAAGGTGGCCACTTGCATAGTGGGCTTG AAACATAAATATTGTTTGGGGCTAATTTACAGTTTTAACTATCGC Right flanking sequence: Indices 10643424 -- 10643923 ACTGATAATATTTACGAATCAAGTAAATCGTGTTTAAAAACTAAACAAAAATCATTTAATTTTAG TGCCGGAATTAATTATAATTACAATTCTGCAAAAATGCATGTCATTCTGCTTACAGTGTTCGCAA AAGAGTTGTTGAAAATATTGTTCATGCCTATCGTATTACTATTTAAGATGGATAACGAATCCACC GCACATCGCCCCACTGTGCGCTGCTTTGTGCGTCGGCATTGCCGGCGTCATCGTTTGTTGTTTCC ATCTCAGTCTGTTGGAATTTCTCGTGGTGTGCGGTTCGGTCGCTCTCGCTTTCCTTCTTCATCGT GCTTGCAATTGACTTTGTGCGGCATTATTATAAGAATCATTACAACGCGTGGTTTTCTTGCGAAT TTTGGCACGAGTTCTTATTAAAAATATATACAGCGAATATCTCTGCTGATTGTGCGTGATTGCGT TTCAATTGTAACTAAACTGTTGTAATTAAACAGAAGTGAACAAAT Found at i:10643509 original size:6 final size:6 Alignment explanation
Indices: 10643498--10643514 Score: 27 Period size: 6 Copynumber: 2.8 Consensus size: 6 10643488 GTGCCGGAAT * 10643498 TAATTA TAATTA CAATT 1 TAATTA TAATTA TAATT 10643515 CTGCAAAAAT Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 6 10 1.00 ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47 Consensus pattern (6 bp): TAATTA Left flanking sequence: Indices 10642998 -- 10643497 GCCATGTTTAAATGCCGGAACTCTGTGCTTGGTTATCAGTGGTGTTTCTGAAATAAATAAATAAA TTGTAAATCAGGCAGCTCGAAAAACTTTATAATAAAATGATGGTCATTTGCCAAGAACTTGAACT ATTGTAGTGAAACGTGAAATGTTTATTTTTCAATATGTTTTCATTGACAGTCGGTACAAATTTTC CACTGTGCGACGCCGGCCCACACACAATAACTGAAAAGCGGGAGAGAGACAGCAGAAGCAACAAC AAGCGACTTGAATGAGCGGGTGGCTTGCCTTGCCGCCTGTTTGTTGCAATTTCTCTTTTATGCGA TCATTCGTTTGTAAGGTGGCCACTTGCATAGTGGGCTTGAAACATAAATATTGTTTGGGGCTAAT TTACAGTTTTAACTATCGCTTAAGTAATTAATTAATACTGATAATATTTACGAATCAAGTAAATC GTGTTTAAAAACTAAACAAAAATCATTTAATTTTAGTGCCGGAAT Right flanking sequence: Indices 10643515 -- 10644014 CTGCAAAAATGCATGTCATTCTGCTTACAGTGTTCGCAAAAGAGTTGTTGAAAATATTGTTCATG CCTATCGTATTACTATTTAAGATGGATAACGAATCCACCGCACATCGCCCCACTGTGCGCTGCTT TGTGCGTCGGCATTGCCGGCGTCATCGTTTGTTGTTTCCATCTCAGTCTGTTGGAATTTCTCGTG GTGTGCGGTTCGGTCGCTCTCGCTTTCCTTCTTCATCGTGCTTGCAATTGACTTTGTGCGGCATT ATTATAAGAATCATTACAACGCGTGGTTTTCTTGCGAATTTTGGCACGAGTTCTTATTAAAAATA TATACAGCGAATATCTCTGCTGATTGTGCGTGATTGCGTTTCAATTGTAACTAAACTGTTGTAAT TAAACAGAAGTGAACAAATTGTGAACAAACAGTGACTGTAATTCAAGGAAAACAACGCAAGCCGG CTGGAAGGCCTAAATCGGAAAAGGAGAGCAATGGCCATAGGGCCA Found at i:10644402 original size:5 final size:5 Alignment explanation
Indices: 10644392--10644404 Score: 26 Period size: 5 Copynumber: 2.6 Consensus size: 5 10644382 GAGGGGCTCA 10644392 AAAAG AAAAG AAA 1 AAAAG AAAAG AAA 10644405 TCGAAAGAAA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 8 1.00 ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00 Consensus pattern (5 bp): AAAAG Left flanking sequence: Indices 10643892 -- 10644391 AAACTGTTGTAATTAAACAGAAGTGAACAAATTGTGAACAAACAGTGACTGTAATTCAAGGAAAA CAACGCAAGCCGGCTGGAAGGCCTAAATCGGAAAAGGAGAGCAATGGCCATAGGGCCAACTGGAA ATAACTAATACTGATCAGCATAAAAAGGTATAACATAATTGTTAGTGACTACAAAATTAAGGGGA ATTAATTATTTTCGGGGAAGTTTGCTGCATATAATTAATAGAGCAGACCCAAAAGCCAAAACCGA ACCCACACAATCTGCGAGCATCGAGAAATCACCTCGAAGGCCATGTGCAGAGACAAGCCCAACAA CCCACAGGTAGCTAGGCCCAGAACCGGTTACCCAATTTCCAATTATAAACCAAAAAAACAAAAAA TCCGAGCCACTCCAACGCCCCACAATAAAAAAAAGACAGAAAGAGCAGTGGGCACCCCTTTCCTG AAAAATGAGACCAAAGATCCCAAATGCGACGCCGCGAGGGGCTCA Right flanking sequence: Indices 10644405 -- 10644904 TCGAAAGAAACCCACCACCAATCCTTGCTCATACTCCCCCTCCTCCGCCACCTTCGCCTCCTTTG CCTCCTCCCTCATTATCCTACTTTCTTCGCTGCCCTGCTTATCATCTTCGCAGACACACACACAC GCACACAGCGAGAAATCATGCCTGCCTTCTTCTATTCGTTCTGCCTTGTCACATGTTCCTCTTCC TTTCCCTTTCACCCTGTTGCGCGCAGGAGAAGGAAAAAACCGTGGTGTGGGTAGGGAAGGGGAGG GAGGCGACTGACCGTCGCGACGCCCGCTGTTTCAAATGGTGATTTCTTGTAGGTTCTCATTTTGG CGTGGCTCTTGTCCCCTTTCCTTCCCCGCTGCTTTATCACTTCGTCTGTCTCTCCCACACTCTCC CTTTGCATTCTGATGAATTTTTTACACCCACCCATCGATAGCGACTTTTGCATTCAACCTACTCC GCCTCCTTCCCTCTCATTTCCACTTCTCGCTGTGTTGCCGCCCCC Found at i:10644530 original size:2 final size:2 Alignment explanation
Indices: 10644523--10644541 Score: 31 Period size: 2 Copynumber: 9.5 Consensus size: 2 10644513 ATCTTCGCAG * 10644523 AC AC AC AC AC AC GC AC AC A 1 AC AC AC AC AC AC AC AC AC A 10644542 GCGAGAAATC Statistics Matches: 15, Mismatches: 2, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 2 15 1.00 ACGTcount: A:0.47, C:0.47, G:0.05, T:0.00 Consensus pattern (2 bp): AC Left flanking sequence: Indices 10644023 -- 10644522 TAACTAATACTGATCAGCATAAAAAGGTATAACATAATTGTTAGTGACTACAAAATTAAGGGGAA TTAATTATTTTCGGGGAAGTTTGCTGCATATAATTAATAGAGCAGACCCAAAAGCCAAAACCGAA CCCACACAATCTGCGAGCATCGAGAAATCACCTCGAAGGCCATGTGCAGAGACAAGCCCAACAAC CCACAGGTAGCTAGGCCCAGAACCGGTTACCCAATTTCCAATTATAAACCAAAAAAACAAAAAAT CCGAGCCACTCCAACGCCCCACAATAAAAAAAAGACAGAAAGAGCAGTGGGCACCCCTTTCCTGA AAAATGAGACCAAAGATCCCAAATGCGACGCCGCGAGGGGCTCAAAAAGAAAAGAAATCGAAAGA AACCCACCACCAATCCTTGCTCATACTCCCCCTCCTCCGCCACCTTCGCCTCCTTTGCCTCCTCC CTCATTATCCTACTTTCTTCGCTGCCCTGCTTATCATCTTCGCAG Right flanking sequence: Indices 10644542 -- 10645041 GCGAGAAATCATGCCTGCCTTCTTCTATTCGTTCTGCCTTGTCACATGTTCCTCTTCCTTTCCCT TTCACCCTGTTGCGCGCAGGAGAAGGAAAAAACCGTGGTGTGGGTAGGGAAGGGGAGGGAGGCGA CTGACCGTCGCGACGCCCGCTGTTTCAAATGGTGATTTCTTGTAGGTTCTCATTTTGGCGTGGCT CTTGTCCCCTTTCCTTCCCCGCTGCTTTATCACTTCGTCTGTCTCTCCCACACTCTCCCTTTGCA TTCTGATGAATTTTTTACACCCACCCATCGATAGCGACTTTTGCATTCAACCTACTCCGCCTCCT TCCCTCTCATTTCCACTTCTCGCTGTGTTGCCGCCCCCACTGACAGTCGCCCTCTATTATTTGCT TGTTCATTATGGACTCATCTTCGTGGTTTGCTCGCCTTCGAAGGAGTTGTCATTGGAACGATCGG TTGGGAAAAAGGGTTGCCGTTGGAAAACGTCATGTTCCCGTGGGG Found at i:10645676 original size:6 final size:6 Alignment explanation
Indices: 10645660--10645677 Score: 29 Period size: 6 Copynumber: 3.0 Consensus size: 6 10645650 GTTGTGCTGC * 10645660 ACCGAT CCCGAT ACCGAT 1 ACCGAT ACCGAT ACCGAT 10645678 CCCAATCCCA Statistics Matches: 10, Mismatches: 2, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 6 10 1.00 ACGTcount: A:0.28, C:0.39, G:0.17, T:0.17 Consensus pattern (6 bp): ACCGAT Left flanking sequence: Indices 10645160 -- 10645659 AAAATTTACTTCTATATTTTTTAAATTCAGTTTAAACTGAAAACTTCAAACCTGCAAATTTGGCT TCGGTTCTGTCTAAATAATCAAGTTTCAAATCAAACATTTAATTTTTCTGTGAAATGCTCTTTCT GAAAGATCCGCTTTCTGCAAAATCAAATAAAAAGTTATAAATACTTGTTGATAATGTGGGGAGTT GTGGAACTTAAGTTTCTAGAACTCTACCGTATTGAGTCATCTGCCATCTTACTTCTGCGTCCGCT GCACGGACCCCCCGCTTGTTATGTTACTGCCAACCCACGCTTGGCTTCCTCCCCCCGCCACTCAA CTTCGACATTCCCATGGAAAAAGCGACCCCAAAAAAAAGGGCAAAAATAAATTACGCACTTCCCG TCGTCGGTGGTAGAGCAATTTTATGCAGCCAGGGGAGGGAGGGTGAAAAGAGGGGTTGCGCCGCC GATGGATGGTACCTGCCCGTGTCGCAAAGAGGGTTGTTGTGCTGC Right flanking sequence: Indices 10645678 -- 10646177 CCCAATCCCAATCCCTAAACCGATCCTATGCCGATGCCTATGCCCATGCGATACGACGATGGTGA TGCGACCCCAGTGAGGCAGCAATCTCACCGAAAATCACATAGGAATTTCCTGTTACACCCGCCCC CTGCCCGAAAGTTACCTGCCCTCGTCTCCGCGCTCCTCGTTTACCTGTTTTCTCCCTCCCGCTCT CTGCAGCAGCTGTTTGTTTTGCGGCTTTCAAGGTTTCTACTTTTTACCTGTTGGCGTCAGTCGGT TCAGTTCGATTGGGATTTTGAATCGGATTCGGCATCGGAGTTCGTCCCCTTTCGCAGCACAGCCA CCCCATTGCGTAGGATTCAATCCACTTCTTATGTGTATGTACATTTCTCACTTCTTTGTTCGCTT TGGGTGGGTGGGGTGTACCTACCAGGTGGGAGGGGGGAGACTTACTCACATCTTCTTCTCCATTT CTTTTGTTGGCCCAAAAGCGGGCAGAGTCGATCCAAACCGAACCG Found at i:10645685 original size:6 final size:6 Alignment explanation
Indices: 10645664--10645692 Score: 37 Period size: 6 Copynumber: 4.8 Consensus size: 6 10645654 TGCTGCACCG * * * 10645664 ATCCCG ATACCG ATCCCA ATCCCA ATCCC 1 ATCCCA ATCCCA ATCCCA ATCCCA ATCCC 10645693 TAAACCGATC Statistics Matches: 20, Mismatches: 3, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 6 20 1.00 ACGTcount: A:0.28, C:0.48, G:0.07, T:0.17 Consensus pattern (6 bp): ATCCCA Left flanking sequence: Indices 10645164 -- 10645663 TTTACTTCTATATTTTTTAAATTCAGTTTAAACTGAAAACTTCAAACCTGCAAATTTGGCTTCGG TTCTGTCTAAATAATCAAGTTTCAAATCAAACATTTAATTTTTCTGTGAAATGCTCTTTCTGAAA GATCCGCTTTCTGCAAAATCAAATAAAAAGTTATAAATACTTGTTGATAATGTGGGGAGTTGTGG AACTTAAGTTTCTAGAACTCTACCGTATTGAGTCATCTGCCATCTTACTTCTGCGTCCGCTGCAC GGACCCCCCGCTTGTTATGTTACTGCCAACCCACGCTTGGCTTCCTCCCCCCGCCACTCAACTTC GACATTCCCATGGAAAAAGCGACCCCAAAAAAAAGGGCAAAAATAAATTACGCACTTCCCGTCGT CGGTGGTAGAGCAATTTTATGCAGCCAGGGGAGGGAGGGTGAAAAGAGGGGTTGCGCCGCCGATG GATGGTACCTGCCCGTGTCGCAAAGAGGGTTGTTGTGCTGCACCG Right flanking sequence: Indices 10645693 -- 10646192 TAAACCGATCCTATGCCGATGCCTATGCCCATGCGATACGACGATGGTGATGCGACCCCAGTGAG GCAGCAATCTCACCGAAAATCACATAGGAATTTCCTGTTACACCCGCCCCCTGCCCGAAAGTTAC CTGCCCTCGTCTCCGCGCTCCTCGTTTACCTGTTTTCTCCCTCCCGCTCTCTGCAGCAGCTGTTT GTTTTGCGGCTTTCAAGGTTTCTACTTTTTACCTGTTGGCGTCAGTCGGTTCAGTTCGATTGGGA TTTTGAATCGGATTCGGCATCGGAGTTCGTCCCCTTTCGCAGCACAGCCACCCCATTGCGTAGGA TTCAATCCACTTCTTATGTGTATGTACATTTCTCACTTCTTTGTTCGCTTTGGGTGGGTGGGGTG TACCTACCAGGTGGGAGGGGGGAGACTTACTCACATCTTCTTCTCCATTTCTTTTGTTGGCCCAA AAGCGGGCAGAGTCGATCCAAACCGAACCGAACCGAAAATCTTTT Found at i:10645720 original size:6 final size:6 Alignment explanation
Indices: 10645702--10645726 Score: 36 Period size: 6 Copynumber: 4.2 Consensus size: 6 10645692 CTAAACCGAT * * 10645702 CCTATG CCGATG CCTATG CCCATG C 1 CCTATG CCTATG CCTATG CCTATG C 10645727 GATACGACGA Statistics Matches: 16, Mismatches: 3, Indels: 0 0.84 0.16 0.00 Matches are distributed among these distances: 6 16 1.00 ACGTcount: A:0.16, C:0.40, G:0.20, T:0.24 Consensus pattern (6 bp): CCTATG Left flanking sequence: Indices 10645202 -- 10645701 ACTTCAAACCTGCAAATTTGGCTTCGGTTCTGTCTAAATAATCAAGTTTCAAATCAAACATTTAA TTTTTCTGTGAAATGCTCTTTCTGAAAGATCCGCTTTCTGCAAAATCAAATAAAAAGTTATAAAT ACTTGTTGATAATGTGGGGAGTTGTGGAACTTAAGTTTCTAGAACTCTACCGTATTGAGTCATCT GCCATCTTACTTCTGCGTCCGCTGCACGGACCCCCCGCTTGTTATGTTACTGCCAACCCACGCTT GGCTTCCTCCCCCCGCCACTCAACTTCGACATTCCCATGGAAAAAGCGACCCCAAAAAAAAGGGC AAAAATAAATTACGCACTTCCCGTCGTCGGTGGTAGAGCAATTTTATGCAGCCAGGGGAGGGAGG GTGAAAAGAGGGGTTGCGCCGCCGATGGATGGTACCTGCCCGTGTCGCAAAGAGGGTTGTTGTGC TGCACCGATCCCGATACCGATCCCAATCCCAATCCCTAAACCGAT Right flanking sequence: Indices 10645727 -- 10646226 GATACGACGATGGTGATGCGACCCCAGTGAGGCAGCAATCTCACCGAAAATCACATAGGAATTTC CTGTTACACCCGCCCCCTGCCCGAAAGTTACCTGCCCTCGTCTCCGCGCTCCTCGTTTACCTGTT TTCTCCCTCCCGCTCTCTGCAGCAGCTGTTTGTTTTGCGGCTTTCAAGGTTTCTACTTTTTACCT GTTGGCGTCAGTCGGTTCAGTTCGATTGGGATTTTGAATCGGATTCGGCATCGGAGTTCGTCCCC TTTCGCAGCACAGCCACCCCATTGCGTAGGATTCAATCCACTTCTTATGTGTATGTACATTTCTC ACTTCTTTGTTCGCTTTGGGTGGGTGGGGTGTACCTACCAGGTGGGAGGGGGGAGACTTACTCAC ATCTTCTTCTCCATTTCTTTTGTTGGCCCAAAAGCGGGCAGAGTCGATCCAAACCGAACCGAACC GAAAATCTTTTGGGCGTCTTGAGTTTTGGTTGGTCTCGTTTTTGC Found at i:10646178 original size:5 final size:5 Alignment explanation
Indices: 10646168--10646184 Score: 34 Period size: 5 Copynumber: 3.4 Consensus size: 5 10646158 AGTCGATCCA 10646168 AACCG AACCG AACCG AA 1 AACCG AACCG AACCG AA 10646185 AATCTTTTGG Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 12 1.00 ACGTcount: A:0.47, C:0.35, G:0.18, T:0.00 Consensus pattern (5 bp): AACCG Left flanking sequence: Indices 10645668 -- 10646167 CGATACCGATCCCAATCCCAATCCCTAAACCGATCCTATGCCGATGCCTATGCCCATGCGATACG ACGATGGTGATGCGACCCCAGTGAGGCAGCAATCTCACCGAAAATCACATAGGAATTTCCTGTTA CACCCGCCCCCTGCCCGAAAGTTACCTGCCCTCGTCTCCGCGCTCCTCGTTTACCTGTTTTCTCC CTCCCGCTCTCTGCAGCAGCTGTTTGTTTTGCGGCTTTCAAGGTTTCTACTTTTTACCTGTTGGC GTCAGTCGGTTCAGTTCGATTGGGATTTTGAATCGGATTCGGCATCGGAGTTCGTCCCCTTTCGC AGCACAGCCACCCCATTGCGTAGGATTCAATCCACTTCTTATGTGTATGTACATTTCTCACTTCT TTGTTCGCTTTGGGTGGGTGGGGTGTACCTACCAGGTGGGAGGGGGGAGACTTACTCACATCTTC TTCTCCATTTCTTTTGTTGGCCCAAAAGCGGGCAGAGTCGATCCA Right flanking sequence: Indices 10646185 -- 10646684 AATCTTTTGGGCGTCTTGAGTTTTGGTTGGTCTCGTTTTTGCTTTTGTGCCCGGCGATCATCATT ATCTTCGTTTCGCTGGCTCATTCTATGGCACCACCACCACCACCAACACCGCCACCAGCCACTCC TCCTACTACAATTTGCCTAAAAAACCCCAACCGTTTCGACCGTTTTTCAATATTCAACGAAACCA ACCAAAATAAAAAAATAAGAAGAAACTCAGAAAATGATGGTGGCGAAGAGGAAGAGCACGACAGA CGGCGACGATGTCTGCTTGAAGGTTGTTGTGAAATTTCATTATGGGTCTGGGTCTGTCTCCTCGC CTCCACCTCCCACTGCTTCCTCCTGGTACTCGTACTCCTACCCCATCCCAAACCCAACCAAGCCC CACCCCCACCTCGGCCTCCTACTCCTCTGATTGCCTGCTGCTGTGCATGTGGTTGTTGTTATTTT TTTTAAGAGGCGTCCAGCGTCAACATTTCAGCGAGGGGTTTCGGT Found at i:10646286 original size:3 final size:3 Alignment explanation
Indices: 10646278--10646311 Score: 45 Period size: 3 Copynumber: 11.0 Consensus size: 3 10646268 CATTCTATGG * * 10646278 CAC CAC CAC CAC CAC CAA CAC CGC CAC CAGC CAC 1 CAC CAC CAC CAC CAC CAC CAC CAC CAC CA-C CAC 10646312 TCCTCCTACT Statistics Matches: 26, Mismatches: 4, Indels: 2 0.81 0.12 0.06 Matches are distributed among these distances: 3 23 0.88 4 3 0.12 ACGTcount: A:0.32, C:0.62, G:0.06, T:0.00 Consensus pattern (3 bp): CAC Left flanking sequence: Indices 10645778 -- 10646277 CACATAGGAATTTCCTGTTACACCCGCCCCCTGCCCGAAAGTTACCTGCCCTCGTCTCCGCGCTC CTCGTTTACCTGTTTTCTCCCTCCCGCTCTCTGCAGCAGCTGTTTGTTTTGCGGCTTTCAAGGTT TCTACTTTTTACCTGTTGGCGTCAGTCGGTTCAGTTCGATTGGGATTTTGAATCGGATTCGGCAT CGGAGTTCGTCCCCTTTCGCAGCACAGCCACCCCATTGCGTAGGATTCAATCCACTTCTTATGTG TATGTACATTTCTCACTTCTTTGTTCGCTTTGGGTGGGTGGGGTGTACCTACCAGGTGGGAGGGG GGAGACTTACTCACATCTTCTTCTCCATTTCTTTTGTTGGCCCAAAAGCGGGCAGAGTCGATCCA AACCGAACCGAACCGAAAATCTTTTGGGCGTCTTGAGTTTTGGTTGGTCTCGTTTTTGCTTTTGT GCCCGGCGATCATCATTATCTTCGTTTCGCTGGCTCATTCTATGG Right flanking sequence: Indices 10646312 -- 10646811 TCCTCCTACTACAATTTGCCTAAAAAACCCCAACCGTTTCGACCGTTTTTCAATATTCAACGAAA CCAACCAAAATAAAAAAATAAGAAGAAACTCAGAAAATGATGGTGGCGAAGAGGAAGAGCACGAC AGACGGCGACGATGTCTGCTTGAAGGTTGTTGTGAAATTTCATTATGGGTCTGGGTCTGTCTCCT CGCCTCCACCTCCCACTGCTTCCTCCTGGTACTCGTACTCCTACCCCATCCCAAACCCAACCAAG CCCCACCCCCACCTCGGCCTCCTACTCCTCTGATTGCCTGCTGCTGTGCATGTGGTTGTTGTTAT TTTTTTTAAGAGGCGTCCAGCGTCAACATTTCAGCGAGGGGTTTCGGTTTTTGGGTTGGGTTGGG TTGTCTTGGCTATATGTATTATACACGAATACGGATAGGCTGGCCCACGGATTGGGATGGTATGG TATGGGATTGGGATGATGATGGCTGCTTGGGCTGTGGCATTTCTC Found at i:10646498 original size:6 final size:6 Alignment explanation
Indices: 10646487--10646500 Score: 28 Period size: 6 Copynumber: 2.3 Consensus size: 6 10646477 AATTTCATTA 10646487 TGGGTC TGGGTC TG 1 TGGGTC TGGGTC TG 10646501 TCTCCTCGCC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 8 1.00 ACGTcount: A:0.00, C:0.14, G:0.50, T:0.36 Consensus pattern (6 bp): TGGGTC Left flanking sequence: Indices 10645987 -- 10646486 TTTCGCAGCACAGCCACCCCATTGCGTAGGATTCAATCCACTTCTTATGTGTATGTACATTTCTC ACTTCTTTGTTCGCTTTGGGTGGGTGGGGTGTACCTACCAGGTGGGAGGGGGGAGACTTACTCAC ATCTTCTTCTCCATTTCTTTTGTTGGCCCAAAAGCGGGCAGAGTCGATCCAAACCGAACCGAACC GAAAATCTTTTGGGCGTCTTGAGTTTTGGTTGGTCTCGTTTTTGCTTTTGTGCCCGGCGATCATC ATTATCTTCGTTTCGCTGGCTCATTCTATGGCACCACCACCACCACCAACACCGCCACCAGCCAC TCCTCCTACTACAATTTGCCTAAAAAACCCCAACCGTTTCGACCGTTTTTCAATATTCAACGAAA CCAACCAAAATAAAAAAATAAGAAGAAACTCAGAAAATGATGGTGGCGAAGAGGAAGAGCACGAC AGACGGCGACGATGTCTGCTTGAAGGTTGTTGTGAAATTTCATTA Right flanking sequence: Indices 10646501 -- 10647000 TCTCCTCGCCTCCACCTCCCACTGCTTCCTCCTGGTACTCGTACTCCTACCCCATCCCAAACCCA ACCAAGCCCCACCCCCACCTCGGCCTCCTACTCCTCTGATTGCCTGCTGCTGTGCATGTGGTTGT TGTTATTTTTTTTAAGAGGCGTCCAGCGTCAACATTTCAGCGAGGGGTTTCGGTTTTTGGGTTGG GTTGGGTTGTCTTGGCTATATGTATTATACACGAATACGGATAGGCTGGCCCACGGATTGGGATG GTATGGTATGGGATTGGGATGATGATGGCTGCTTGGGCTGTGGCATTTCTCGTGTGTAGGTAGGT GGTTTCTCGGAAATCCATTTGTTCATATGATAACCCAAAGAGTACAACACGAAACCCAACCGGCT GAGAGGCGAAGGAGGAGCAGTCATTTGCTGACGGTCGAGAATTGAAGCTTTCAACCCGATCGCCA TTCCAAAATGCGGATGGGTGTATGTGGAAGCCCTGTGAAACTAGG Found at i:10646546 original size:6 final size:6 Alignment explanation
Indices: 10646535--10646550 Score: 25 Period size: 6 Copynumber: 2.7 Consensus size: 6 10646525 CTTCCTCCTG * 10646535 GTACTC GTACTC CTAC 1 GTACTC GTACTC GTAC 10646551 CCCATCCCAA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 6 9 1.00 ACGTcount: A:0.19, C:0.38, G:0.12, T:0.31 Consensus pattern (6 bp): GTACTC Left flanking sequence: Indices 10646035 -- 10646534 GTGTATGTACATTTCTCACTTCTTTGTTCGCTTTGGGTGGGTGGGGTGTACCTACCAGGTGGGAG GGGGGAGACTTACTCACATCTTCTTCTCCATTTCTTTTGTTGGCCCAAAAGCGGGCAGAGTCGAT CCAAACCGAACCGAACCGAAAATCTTTTGGGCGTCTTGAGTTTTGGTTGGTCTCGTTTTTGCTTT TGTGCCCGGCGATCATCATTATCTTCGTTTCGCTGGCTCATTCTATGGCACCACCACCACCACCA ACACCGCCACCAGCCACTCCTCCTACTACAATTTGCCTAAAAAACCCCAACCGTTTCGACCGTTT TTCAATATTCAACGAAACCAACCAAAATAAAAAAATAAGAAGAAACTCAGAAAATGATGGTGGCG AAGAGGAAGAGCACGACAGACGGCGACGATGTCTGCTTGAAGGTTGTTGTGAAATTTCATTATGG GTCTGGGTCTGTCTCCTCGCCTCCACCTCCCACTGCTTCCTCCTG Right flanking sequence: Indices 10646551 -- 10647050 CCCATCCCAAACCCAACCAAGCCCCACCCCCACCTCGGCCTCCTACTCCTCTGATTGCCTGCTGC TGTGCATGTGGTTGTTGTTATTTTTTTTAAGAGGCGTCCAGCGTCAACATTTCAGCGAGGGGTTT CGGTTTTTGGGTTGGGTTGGGTTGTCTTGGCTATATGTATTATACACGAATACGGATAGGCTGGC CCACGGATTGGGATGGTATGGTATGGGATTGGGATGATGATGGCTGCTTGGGCTGTGGCATTTCT CGTGTGTAGGTAGGTGGTTTCTCGGAAATCCATTTGTTCATATGATAACCCAAAGAGTACAACAC GAAACCCAACCGGCTGAGAGGCGAAGGAGGAGCAGTCATTTGCTGACGGTCGAGAATTGAAGCTT TCAACCCGATCGCCATTCCAAAATGCGGATGGGTGTATGTGGAAGCCCTGTGAAACTAGGGGATC TACCATCTATCTCAAAGCGTTTGTGTGCCATGAATGAGATCAGAT Found at i:10646581 original size:6 final size:6 Alignment explanation
Indices: 10646572--10646584 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 10646562 CCCAACCAAG 10646572 CCCCAC CCCCAC C 1 CCCCAC CCCCAC C 10646585 TCGGCCTCCT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.15, C:0.85, G:0.00, T:0.00 Consensus pattern (6 bp): CCCCAC Left flanking sequence: Indices 10646072 -- 10646571 TGGGTGGGGTGTACCTACCAGGTGGGAGGGGGGAGACTTACTCACATCTTCTTCTCCATTTCTTT TGTTGGCCCAAAAGCGGGCAGAGTCGATCCAAACCGAACCGAACCGAAAATCTTTTGGGCGTCTT GAGTTTTGGTTGGTCTCGTTTTTGCTTTTGTGCCCGGCGATCATCATTATCTTCGTTTCGCTGGC TCATTCTATGGCACCACCACCACCACCAACACCGCCACCAGCCACTCCTCCTACTACAATTTGCC TAAAAAACCCCAACCGTTTCGACCGTTTTTCAATATTCAACGAAACCAACCAAAATAAAAAAATA AGAAGAAACTCAGAAAATGATGGTGGCGAAGAGGAAGAGCACGACAGACGGCGACGATGTCTGCT TGAAGGTTGTTGTGAAATTTCATTATGGGTCTGGGTCTGTCTCCTCGCCTCCACCTCCCACTGCT TCCTCCTGGTACTCGTACTCCTACCCCATCCCAAACCCAACCAAG Right flanking sequence: Indices 10646585 -- 10647084 TCGGCCTCCTACTCCTCTGATTGCCTGCTGCTGTGCATGTGGTTGTTGTTATTTTTTTTAAGAGG CGTCCAGCGTCAACATTTCAGCGAGGGGTTTCGGTTTTTGGGTTGGGTTGGGTTGTCTTGGCTAT ATGTATTATACACGAATACGGATAGGCTGGCCCACGGATTGGGATGGTATGGTATGGGATTGGGA TGATGATGGCTGCTTGGGCTGTGGCATTTCTCGTGTGTAGGTAGGTGGTTTCTCGGAAATCCATT TGTTCATATGATAACCCAAAGAGTACAACACGAAACCCAACCGGCTGAGAGGCGAAGGAGGAGCA GTCATTTGCTGACGGTCGAGAATTGAAGCTTTCAACCCGATCGCCATTCCAAAATGCGGATGGGT GTATGTGGAAGCCCTGTGAAACTAGGGGATCTACCATCTATCTCAAAGCGTTTGTGTGCCATGAA TGAGATCAGATAAATCATTCTAAAGGAATTTATCTGTATACCACA Found at i:10646697 original size:5 final size:5 Alignment explanation
Indices: 10646687--10646704 Score: 36 Period size: 5 Copynumber: 3.6 Consensus size: 5 10646677 GTTTCGGTTT 10646687 TTGGG TTGGG TTGGG TTG 1 TTGGG TTGGG TTGGG TTG 10646705 TCTTGGCTAT Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 13 1.00 ACGTcount: A:0.00, C:0.00, G:0.56, T:0.44 Consensus pattern (5 bp): TTGGG Left flanking sequence: Indices 10646187 -- 10646686 TCTTTTGGGCGTCTTGAGTTTTGGTTGGTCTCGTTTTTGCTTTTGTGCCCGGCGATCATCATTAT CTTCGTTTCGCTGGCTCATTCTATGGCACCACCACCACCACCAACACCGCCACCAGCCACTCCTC CTACTACAATTTGCCTAAAAAACCCCAACCGTTTCGACCGTTTTTCAATATTCAACGAAACCAAC CAAAATAAAAAAATAAGAAGAAACTCAGAAAATGATGGTGGCGAAGAGGAAGAGCACGACAGACG GCGACGATGTCTGCTTGAAGGTTGTTGTGAAATTTCATTATGGGTCTGGGTCTGTCTCCTCGCCT CCACCTCCCACTGCTTCCTCCTGGTACTCGTACTCCTACCCCATCCCAAACCCAACCAAGCCCCA CCCCCACCTCGGCCTCCTACTCCTCTGATTGCCTGCTGCTGTGCATGTGGTTGTTGTTATTTTTT TTAAGAGGCGTCCAGCGTCAACATTTCAGCGAGGGGTTTCGGTTT Right flanking sequence: Indices 10646705 -- 10647204 TCTTGGCTATATGTATTATACACGAATACGGATAGGCTGGCCCACGGATTGGGATGGTATGGTAT GGGATTGGGATGATGATGGCTGCTTGGGCTGTGGCATTTCTCGTGTGTAGGTAGGTGGTTTCTCG GAAATCCATTTGTTCATATGATAACCCAAAGAGTACAACACGAAACCCAACCGGCTGAGAGGCGA AGGAGGAGCAGTCATTTGCTGACGGTCGAGAATTGAAGCTTTCAACCCGATCGCCATTCCAAAAT GCGGATGGGTGTATGTGGAAGCCCTGTGAAACTAGGGGATCTACCATCTATCTCAAAGCGTTTGT GTGCCATGAATGAGATCAGATAAATCATTCTAAAGGAATTTATCTGTATACCACAGCGCTACTTG GCGATAGATTCAACTAGAAAGTCACACCTAAATGCATCCTCTTCAAATTCAGAATCCAAATCCAT TCATCATGCTCGTATGTATGTATCCTGGAACCTCCTTCTACTCCT Found at i:10646778 original size:6 final size:5 Alignment explanation
Indices: 10646754--10646781 Score: 33 Period size: 5 Copynumber: 5.4 Consensus size: 5 10646744 GCCCACGGAT * * 10646754 TGGGA TGGTA TGGTA TGGGA TTGGGA TG 1 TGGGA TGGGA TGGGA TGGGA -TGGGA TG 10646782 ATGATGGCTG Statistics Matches: 20, Mismatches: 2, Indels: 2 0.83 0.08 0.08 Matches are distributed among these distances: 5 15 0.75 6 5 0.25 ACGTcount: A:0.18, C:0.00, G:0.50, T:0.32 Consensus pattern (5 bp): TGGGA Left flanking sequence: Indices 10646254 -- 10646753 TCGTTTCGCTGGCTCATTCTATGGCACCACCACCACCACCAACACCGCCACCAGCCACTCCTCCT ACTACAATTTGCCTAAAAAACCCCAACCGTTTCGACCGTTTTTCAATATTCAACGAAACCAACCA AAATAAAAAAATAAGAAGAAACTCAGAAAATGATGGTGGCGAAGAGGAAGAGCACGACAGACGGC GACGATGTCTGCTTGAAGGTTGTTGTGAAATTTCATTATGGGTCTGGGTCTGTCTCCTCGCCTCC ACCTCCCACTGCTTCCTCCTGGTACTCGTACTCCTACCCCATCCCAAACCCAACCAAGCCCCACC CCCACCTCGGCCTCCTACTCCTCTGATTGCCTGCTGCTGTGCATGTGGTTGTTGTTATTTTTTTT AAGAGGCGTCCAGCGTCAACATTTCAGCGAGGGGTTTCGGTTTTTGGGTTGGGTTGGGTTGTCTT GGCTATATGTATTATACACGAATACGGATAGGCTGGCCCACGGAT Right flanking sequence: Indices 10646782 -- 10647281 ATGATGGCTGCTTGGGCTGTGGCATTTCTCGTGTGTAGGTAGGTGGTTTCTCGGAAATCCATTTG TTCATATGATAACCCAAAGAGTACAACACGAAACCCAACCGGCTGAGAGGCGAAGGAGGAGCAGT CATTTGCTGACGGTCGAGAATTGAAGCTTTCAACCCGATCGCCATTCCAAAATGCGGATGGGTGT ATGTGGAAGCCCTGTGAAACTAGGGGATCTACCATCTATCTCAAAGCGTTTGTGTGCCATGAATG AGATCAGATAAATCATTCTAAAGGAATTTATCTGTATACCACAGCGCTACTTGGCGATAGATTCA ACTAGAAAGTCACACCTAAATGCATCCTCTTCAAATTCAGAATCCAAATCCATTCATCATGCTCG TATGTATGTATCCTGGAACCTCCTTCTACTCCTCCTCCTCCTTTTCTGAAGGATCGCATCCGTTG GTCCGCAACAAAAGCAACAGGATCGGCACTAAAAACCCCACTCCA Found at i:10647156 original size:6 final size:6 Alignment explanation
Indices: 10647138--10647158 Score: 26 Period size: 6 Copynumber: 3.3 Consensus size: 6 10647128 GCATCCTCTT * 10647138 CAAATT CAGAATC CAAATC CA 1 CAAATC CA-AATC CAAATC CA 10647159 TTCATCATGC Statistics Matches: 13, Mismatches: 1, Indels: 2 0.81 0.06 0.12 Matches are distributed among these distances: 6 8 0.62 7 5 0.38 ACGTcount: A:0.48, C:0.29, G:0.05, T:0.19 Consensus pattern (6 bp): CAAATC Left flanking sequence: Indices 10646638 -- 10647137 TTTTTTAAGAGGCGTCCAGCGTCAACATTTCAGCGAGGGGTTTCGGTTTTTGGGTTGGGTTGGGT TGTCTTGGCTATATGTATTATACACGAATACGGATAGGCTGGCCCACGGATTGGGATGGTATGGT ATGGGATTGGGATGATGATGGCTGCTTGGGCTGTGGCATTTCTCGTGTGTAGGTAGGTGGTTTCT CGGAAATCCATTTGTTCATATGATAACCCAAAGAGTACAACACGAAACCCAACCGGCTGAGAGGC GAAGGAGGAGCAGTCATTTGCTGACGGTCGAGAATTGAAGCTTTCAACCCGATCGCCATTCCAAA ATGCGGATGGGTGTATGTGGAAGCCCTGTGAAACTAGGGGATCTACCATCTATCTCAAAGCGTTT GTGTGCCATGAATGAGATCAGATAAATCATTCTAAAGGAATTTATCTGTATACCACAGCGCTACT TGGCGATAGATTCAACTAGAAAGTCACACCTAAATGCATCCTCTT Right flanking sequence: Indices 10647159 -- 10647658 TTCATCATGCTCGTATGTATGTATCCTGGAACCTCCTTCTACTCCTCCTCCTCCTTTTCTGAAGG ATCGCATCCGTTGGTCCGCAACAAAAGCAACAGGATCGGCACTAAAAACCCCACTCCACCCCGCA CAAACCCAAATCCCCTCGGCCACCCCAACCACTGGCAAATGGCAGCTGCAACCTGCAGCCCAACG GGGCAACCCTAAAAGTGATCTCTACCCTGGGCAGCAGGTTGTTGTCGGCCTGGATTGCAGTTGAG AAACGAAGCAGTAAGACGGAAAACCACCCCTAAAAAGGGAATGGAAAACATGGCACAAATTGCTA CCCCATGGATGATCGGACACCGAGCACATGTTGCATGCGGCAAAGATTTCACCAGAAAAGGAGCA GATCAGGGAGGGTGCATCTGACACGGCTTGGACTTAGGTCTCTCAAGACGACCCCTGAAGTCCTC AAGGCGAAGGACAGACGAACATGTGCAACGTCTGCGCCTGCATTT Found at i:10647208 original size:3 final size:3 Alignment explanation
Indices: 10647190--10647213 Score: 34 Period size: 3 Copynumber: 8.0 Consensus size: 3 10647180 TATCCTGGAA * * 10647190 CCT CCT TCT ACT CCT CCT CCT CCT 1 CCT CCT CCT CCT CCT CCT CCT CCT 10647214 TTTCTGAAGG Statistics Matches: 18, Mismatches: 3, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 3 18 1.00 ACGTcount: A:0.04, C:0.58, G:0.00, T:0.38 Consensus pattern (3 bp): CCT Left flanking sequence: Indices 10646690 -- 10647189 GGTTGGGTTGGGTTGTCTTGGCTATATGTATTATACACGAATACGGATAGGCTGGCCCACGGATT GGGATGGTATGGTATGGGATTGGGATGATGATGGCTGCTTGGGCTGTGGCATTTCTCGTGTGTAG GTAGGTGGTTTCTCGGAAATCCATTTGTTCATATGATAACCCAAAGAGTACAACACGAAACCCAA CCGGCTGAGAGGCGAAGGAGGAGCAGTCATTTGCTGACGGTCGAGAATTGAAGCTTTCAACCCGA TCGCCATTCCAAAATGCGGATGGGTGTATGTGGAAGCCCTGTGAAACTAGGGGATCTACCATCTA TCTCAAAGCGTTTGTGTGCCATGAATGAGATCAGATAAATCATTCTAAAGGAATTTATCTGTATA CCACAGCGCTACTTGGCGATAGATTCAACTAGAAAGTCACACCTAAATGCATCCTCTTCAAATTC AGAATCCAAATCCATTCATCATGCTCGTATGTATGTATCCTGGAA Right flanking sequence: Indices 10647214 -- 10647713 TTTCTGAAGGATCGCATCCGTTGGTCCGCAACAAAAGCAACAGGATCGGCACTAAAAACCCCACT CCACCCCGCACAAACCCAAATCCCCTCGGCCACCCCAACCACTGGCAAATGGCAGCTGCAACCTG CAGCCCAACGGGGCAACCCTAAAAGTGATCTCTACCCTGGGCAGCAGGTTGTTGTCGGCCTGGAT TGCAGTTGAGAAACGAAGCAGTAAGACGGAAAACCACCCCTAAAAAGGGAATGGAAAACATGGCA CAAATTGCTACCCCATGGATGATCGGACACCGAGCACATGTTGCATGCGGCAAAGATTTCACCAG AAAAGGAGCAGATCAGGGAGGGTGCATCTGACACGGCTTGGACTTAGGTCTCTCAAGACGACCCC TGAAGTCCTCAAGGCGAAGGACAGACGAACATGTGCAACGTCTGCGCCTGCATTTCTGTACCTTG TGCATGTATTTCACTTTATTATTTTTCGTTTTTTTTTTTTTTGCT Found at i:10647701 original size:1 final size:1 Alignment explanation
Indices: 10647697--10647710 Score: 28 Period size: 1 Copynumber: 14.0 Consensus size: 1 10647687 TTATTTTTCG 10647697 TTTTTTTTTTTTTT 1 TTTTTTTTTTTTTT 10647711 GCTGGCTAGC Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 13 1.00 ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00 Consensus pattern (1 bp): T Left flanking sequence: Indices 10647197 -- 10647696 CTACTCCTCCTCCTCCTTTTCTGAAGGATCGCATCCGTTGGTCCGCAACAAAAGCAACAGGATCG GCACTAAAAACCCCACTCCACCCCGCACAAACCCAAATCCCCTCGGCCACCCCAACCACTGGCAA ATGGCAGCTGCAACCTGCAGCCCAACGGGGCAACCCTAAAAGTGATCTCTACCCTGGGCAGCAGG TTGTTGTCGGCCTGGATTGCAGTTGAGAAACGAAGCAGTAAGACGGAAAACCACCCCTAAAAAGG GAATGGAAAACATGGCACAAATTGCTACCCCATGGATGATCGGACACCGAGCACATGTTGCATGC GGCAAAGATTTCACCAGAAAAGGAGCAGATCAGGGAGGGTGCATCTGACACGGCTTGGACTTAGG TCTCTCAAGACGACCCCTGAAGTCCTCAAGGCGAAGGACAGACGAACATGTGCAACGTCTGCGCC TGCATTTCTGTACCTTGTGCATGTATTTCACTTTATTATTTTTCG Right flanking sequence: Indices 10647711 -- 10648210 GCTGGCTAGCTGGCCATTTTATGAGGGCGCGCACCTGCCAACAGCTGCCGCCGCCGCCGCAAAAG ATGAGGAAAGTAAGCGCGGGCAATCATAGCCAAAAGCTATGGTCGCTGACTTGTTTTCTGGGCCT GCCCTTGAAGCCGTCGCACGCCCACCGCCAGCAGATGAACCACCCAAAAAGAGGAAAAAAAAAAA ACTAAATACAAAAAATTGGAATGAAGCAACAAACGAAACCAGCTCCGAAGACTTTTGGGCCCAAA AGCAATTTGCTTTTGTTGTCTGCTGGCCGGCCATCATCCGCCTCGAAAAACCTAAAAACAAGCTC AAAGAGAAGACGCCAAAAAAAGTATAGTAAGAAAACAAAGAAGAAACAGCAGCAGCAGAAGCAGA AGCAGCTGCCATCGCATCGTGGCCACAAAAAGTACCACCTGCCGCCCATATACATGTCGCCACAA CCGCTGTCCTTTGTTCGCCGGCAGCCCCATTAACCCAAGGATATG Found at i:10647765 original size:3 final size:3 Alignment explanation
Indices: 10647757--10647770 Score: 28 Period size: 3 Copynumber: 4.7 Consensus size: 3 10647747 GCCAACAGCT 10647757 GCC GCC GCC GCC GC 1 GCC GCC GCC GCC GC 10647771 AAAAGATGAG Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 11 1.00 ACGTcount: A:0.00, C:0.64, G:0.36, T:0.00 Consensus pattern (3 bp): GCC Left flanking sequence: Indices 10647257 -- 10647756 GATCGGCACTAAAAACCCCACTCCACCCCGCACAAACCCAAATCCCCTCGGCCACCCCAACCACT GGCAAATGGCAGCTGCAACCTGCAGCCCAACGGGGCAACCCTAAAAGTGATCTCTACCCTGGGCA GCAGGTTGTTGTCGGCCTGGATTGCAGTTGAGAAACGAAGCAGTAAGACGGAAAACCACCCCTAA AAAGGGAATGGAAAACATGGCACAAATTGCTACCCCATGGATGATCGGACACCGAGCACATGTTG CATGCGGCAAAGATTTCACCAGAAAAGGAGCAGATCAGGGAGGGTGCATCTGACACGGCTTGGAC TTAGGTCTCTCAAGACGACCCCTGAAGTCCTCAAGGCGAAGGACAGACGAACATGTGCAACGTCT GCGCCTGCATTTCTGTACCTTGTGCATGTATTTCACTTTATTATTTTTCGTTTTTTTTTTTTTTG CTGGCTAGCTGGCCATTTTATGAGGGCGCGCACCTGCCAACAGCT Right flanking sequence: Indices 10647771 -- 10648270 AAAAGATGAGGAAAGTAAGCGCGGGCAATCATAGCCAAAAGCTATGGTCGCTGACTTGTTTTCTG GGCCTGCCCTTGAAGCCGTCGCACGCCCACCGCCAGCAGATGAACCACCCAAAAAGAGGAAAAAA AAAAAACTAAATACAAAAAATTGGAATGAAGCAACAAACGAAACCAGCTCCGAAGACTTTTGGGC CCAAAAGCAATTTGCTTTTGTTGTCTGCTGGCCGGCCATCATCCGCCTCGAAAAACCTAAAAACA AGCTCAAAGAGAAGACGCCAAAAAAAGTATAGTAAGAAAACAAAGAAGAAACAGCAGCAGCAGAA GCAGAAGCAGCTGCCATCGCATCGTGGCCACAAAAAGTACCACCTGCCGCCCATATACATGTCGC CACAACCGCTGTCCTTTGTTCGCCGGCAGCCCCATTAACCCAAGGATATGCCACCATGGGAATGG GAAAGGAAGTGTTGAGAAAACGTGCGTCCTAAGGATACAATTCAA Found at i:10648088 original size:3 final size:3 Alignment explanation
Indices: 10648082--10648106 Score: 36 Period size: 3 Copynumber: 8.3 Consensus size: 3 10648072 AAAGAAGAAA * * 10648082 CAG CAG CAG CAG AAG CAG AAG CAG C 1 CAG CAG CAG CAG CAG CAG CAG CAG C 10648107 TGCCATCGCA Statistics Matches: 18, Mismatches: 4, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 3 18 1.00 ACGTcount: A:0.40, C:0.28, G:0.32, T:0.00 Consensus pattern (3 bp): CAG Left flanking sequence: Indices 10647582 -- 10648081 TTAGGTCTCTCAAGACGACCCCTGAAGTCCTCAAGGCGAAGGACAGACGAACATGTGCAACGTCT GCGCCTGCATTTCTGTACCTTGTGCATGTATTTCACTTTATTATTTTTCGTTTTTTTTTTTTTTG CTGGCTAGCTGGCCATTTTATGAGGGCGCGCACCTGCCAACAGCTGCCGCCGCCGCCGCAAAAGA TGAGGAAAGTAAGCGCGGGCAATCATAGCCAAAAGCTATGGTCGCTGACTTGTTTTCTGGGCCTG CCCTTGAAGCCGTCGCACGCCCACCGCCAGCAGATGAACCACCCAAAAAGAGGAAAAAAAAAAAA CTAAATACAAAAAATTGGAATGAAGCAACAAACGAAACCAGCTCCGAAGACTTTTGGGCCCAAAA GCAATTTGCTTTTGTTGTCTGCTGGCCGGCCATCATCCGCCTCGAAAAACCTAAAAACAAGCTCA AAGAGAAGACGCCAAAAAAAGTATAGTAAGAAAACAAAGAAGAAA Right flanking sequence: Indices 10648107 -- 10648606 TGCCATCGCATCGTGGCCACAAAAAGTACCACCTGCCGCCCATATACATGTCGCCACAACCGCTG TCCTTTGTTCGCCGGCAGCCCCATTAACCCAAGGATATGCCACCATGGGAATGGGAAAGGAAGTG TTGAGAAAACGTGCGTCCTAAGGATACAATTCAATTTCCTTTGGGGGCAGAAAGGGAGAAAGTCC TTATGGAAATACTAAACAGGCTTAAAATGGTAACTCAGCTGCTAGATTTGGTTGAATTTGCTTCA AAAGGAAACCATCTTTGAAGTTGAAATTTATTCAAACAATTTATTCATTCAATTTATTCAAAACA ATCAACACGCAATCCGTTACCGGGGATCCCTCGCAGATTTTTCTTATGACGTCTAACTAAGATAG AACTGACTACGATGAGTAATGGGTTTATTTTGTTAGAAAGCCAGCTGTTTTTGAGCGAGTGCTTT AAAAATTATATTTTACGCTTGAATCTTCCTTAAAGTAAAAATTGC Found at