TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: arm_X assembled 2004-3-18 md5checksum:d304f6c7f10939bacf40e33958147342 Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 22224390 ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29 Warning! 8514 characters in sequence are not A, C, G, or T Found at i: i:5129905 original size:2 final size:2 Alignment explanation
Indices: 5129898--5129935 Score: 62 Period size: 2 Copynumber: 19.0 Consensus size: 2 5129888 TAATAAGCAG * * 5129898 CA CA CA CA CA CA CA CA CA CA CA CA CG CA CA CG CA CA CA 1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA 5129936 TGCGAAAGGC Statistics Matches: 32, Mismatches: 4, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 2 32 1.00 ACGTcount: A:0.45, C:0.50, G:0.05, T:0.00 Consensus pattern (2 bp): CA Left flanking sequence: Indices 5129398 -- 5129897 CAGACCAACCCACACACGCACTCAGCGGTCGAATGGGGCAAACAACTTAACAACATTGTTCAACT TTTATGAGCATTATTAAAAATTAATCAACAATTTACATTTATTTACACAGGAGGATAGCCAGCGA ACAGAGAGAGGGAAAGCGGGAAAGCTAATGGGTAGTTACTCAGCCGGCCACCCACACTGCCGCCC ACATTTTCCACCCACACTTTCCACCCACAGCCGCTGACCCAAAAGCGACCGCACTTCAAACAGCC TGAACTGAAACTGAAAATGAAACTGAAACTGATGTAGACATTCACTGAAAATTACGTAAATTAAA TTTGTTTTTATGGCAGTCAGCCGCTCAAATGTATGAGGCCCAGCCAGTGGCGTTGGTGGTGTTCA TTCAACGGGGGCATTTCAAACCCTGAACACTTAATACAAACCCTTCGGGTGCCACTGAACCCACA CACACACACACACATACACTCACGCACTGCGTGCTTAATAAGCAG Right flanking sequence: Indices 5129936 -- 5130435 TGCGAAAGGCCAAGGAGTAAGCCCAAAAAGTTAAAACAAATGCTGGAAAAAAAATCTGAAAAGGG AACGGAAAGCCGAGAAGGACCAAAAATTCGGACCAAAGACGGCCTTGGGGCACAGAAGGGGGTCC GACGAGGATGGTGGCTTGGTTGGTGACCCCGAGCAGCAGCAGAAATGTGTAACAAGGAGACGATG GAAGGGCGCCAGACCTTTGGGTCATGCTCAGTCGCTATGCGTTGCCCCGTTGATAATGAGATGGC AAGTGGAAGGGGAAGTGGAAGGGGAAGTGGAAGAGGAAGTGGAAGGGGAAGGGGAAGTGGAAGAG GAAGTGGCAGAGGAAGAGGCAGTGGGTTTGGCGGCACTACCGAGCTGCTCAGTGGCTTCATCAAT TTGCACTTTCGGCATTTTATGGTCAACTTTGGCAGCAAGTGCAACGAAACCAAGAAGCTGCAAAG AAACACGAAGAGCTGAGATAAATAAAGCCCCTTTTGACTCGTCGC Found at i:5130215 original size:6 final size:6 Alignment explanation
Indices: 5130196--5130285 Score: 110 Period size: 6 Copynumber: 15.0 Consensus size: 6 5130186 ATGAGATGGC * * * * 5130196 AAGTGG AAGGGG AAGTGG AAGGGG AAGTGG AAGAGG AAGTGG AAGGGG 1 AAGTGG AAGTGG AAGTGG AAGTGG AAGTGG AAGTGG AAGTGG AAGTGG * * * * * * 5130244 AAGGGG AAGTGG AAGAGG AAGTGG CAGAGG AAGAGG CAGTGG 1 AAGTGG AAGTGG AAGTGG AAGTGG AAGTGG AAGTGG AAGTGG 5130286 GTTTGGCGGC Statistics Matches: 69, Mismatches: 15, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 6 69 1.00 ACGTcount: A:0.36, C:0.02, G:0.54, T:0.08 Consensus pattern (6 bp): AAGTGG Left flanking sequence: Indices 5129696 -- 5130195 CATTCACTGAAAATTACGTAAATTAAATTTGTTTTTATGGCAGTCAGCCGCTCAAATGTATGAGG CCCAGCCAGTGGCGTTGGTGGTGTTCATTCAACGGGGGCATTTCAAACCCTGAACACTTAATACA AACCCTTCGGGTGCCACTGAACCCACACACACACACACACATACACTCACGCACTGCGTGCTTAA TAAGCAGCACACACACACACACACACACACACGCACACGCACACATGCGAAAGGCCAAGGAGTAA GCCCAAAAAGTTAAAACAAATGCTGGAAAAAAAATCTGAAAAGGGAACGGAAAGCCGAGAAGGAC CAAAAATTCGGACCAAAGACGGCCTTGGGGCACAGAAGGGGGTCCGACGAGGATGGTGGCTTGGT TGGTGACCCCGAGCAGCAGCAGAAATGTGTAACAAGGAGACGATGGAAGGGCGCCAGACCTTTGG GTCATGCTCAGTCGCTATGCGTTGCCCCGTTGATAATGAGATGGC Right flanking sequence: Indices 5130286 -- 5130785 GTTTGGCGGCACTACCGAGCTGCTCAGTGGCTTCATCAATTTGCACTTTCGGCATTTTATGGTCA ACTTTGGCAGCAAGTGCAACGAAACCAAGAAGCTGCAAAGAAACACGAAGAGCTGAGATAAATAA AGCCCCTTTTGACTCGTCGCAATTTAAGTTAGTTAATTAATTTTGCCAACCAAGAGAAATATTAT TATTACAATACATAAATTGCATTAAACTCACATGAAGTGCGGATATAACTTAAAAAACAACTTTG ATGGGCATTCGTTCTTGAGAAGCCAAGCTATTTCGTACTATTTATTTAACCCTTAATAATCGTGG CAGAAGTAACAAATCATCATGAATTTCTTAATTTGTTTACTCTGCGCCGAATCGTTTTAACAATT AAAATATCCATTTCAACTTGCTAAGCATTTCCCGGCCACGGAAAACACAGTTCAACCCTTTCTGT TTGCCAGCTCCGCCCAAAGGAAAAAACAGATTTACCAGGCACCTG Found at i:5130801 original size:1 final size:1 Alignment explanation
Indices: 5130795--5130808 Score: 28 Period size: 1 Copynumber: 14.0 Consensus size: 1 5130785 GTGACTCAGT 5130795 CCCCCCCCCCCCCC 1 CCCCCCCCCCCCCC 5130809 AAAAGCCCCA Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 13 1.00 ACGTcount: A:0.00, C:1.00, G:0.00, T:0.00 Consensus pattern (1 bp): C Left flanking sequence: Indices 5130295 -- 5130794 CACTACCGAGCTGCTCAGTGGCTTCATCAATTTGCACTTTCGGCATTTTATGGTCAACTTTGGCA GCAAGTGCAACGAAACCAAGAAGCTGCAAAGAAACACGAAGAGCTGAGATAAATAAAGCCCCTTT TGACTCGTCGCAATTTAAGTTAGTTAATTAATTTTGCCAACCAAGAGAAATATTATTATTACAAT ACATAAATTGCATTAAACTCACATGAAGTGCGGATATAACTTAAAAAACAACTTTGATGGGCATT CGTTCTTGAGAAGCCAAGCTATTTCGTACTATTTATTTAACCCTTAATAATCGTGGCAGAAGTAA CAAATCATCATGAATTTCTTAATTTGTTTACTCTGCGCCGAATCGTTTTAACAATTAAAATATCC ATTTCAACTTGCTAAGCATTTCCCGGCCACGGAAAACACAGTTCAACCCTTTCTGTTTGCCAGCT CCGCCCAAAGGAAAAAACAGATTTACCAGGCACCTGTGACTCAGT Right flanking sequence: Indices 5130809 -- 5131308 AAAAGCCCCATCTCTTACTGCTCAACCCTTCGCCCCCCTTTTATCTCTGGCGGCACTTTAGTGGG GTTTTTTTTGGGTGGAATGGGTTTATAGAGCCGTTTCTGTTGGCAACTCAAATTGAAGGCCCCTC GTAACTTTCAATGTCGTTGGGCAAAAAGTTTCATTTACAAGCGACCAGCTTCGGCTTCGGCAGCA GCAACTACAACAGCAATGACAATGGCCGGCGCAAATATCAATGATATGTTTGTTAAAAAACACGA CAAGGACAACAAGGACCTACCAACCAGGCGCCACCAGCCGACAAACGAAGCCGTCATGGAATAAA GTCTGAACATTTTTCGGGTTTTCCATCTGTTTTCACACGGTACTCGCTTCGTTTGCCAGGGCATA TTTTTTTAACGCTCATTATCTGTTTGCATGCGAAAATTTAAATCGGTCAATTGAATTGCATAAAT GAATAAATGAAATAAAATCAAGTGAGAATGCATTTAAGATAGAAA Found at i:5130997 original size:6 final size:6 Alignment explanation
Indices: 5130986--5130999 Score: 28 Period size: 6 Copynumber: 2.3 Consensus size: 6 5130976 CAAGCGACCA 5130986 GCTTCG GCTTCG GC 1 GCTTCG GCTTCG GC 5131000 AGCAGCAACT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 8 1.00 ACGTcount: A:0.00, C:0.36, G:0.36, T:0.29 Consensus pattern (6 bp): GCTTCG Left flanking sequence: Indices 5130486 -- 5130985 CAATACATAAATTGCATTAAACTCACATGAAGTGCGGATATAACTTAAAAAACAACTTTGATGGG CATTCGTTCTTGAGAAGCCAAGCTATTTCGTACTATTTATTTAACCCTTAATAATCGTGGCAGAA GTAACAAATCATCATGAATTTCTTAATTTGTTTACTCTGCGCCGAATCGTTTTAACAATTAAAAT ATCCATTTCAACTTGCTAAGCATTTCCCGGCCACGGAAAACACAGTTCAACCCTTTCTGTTTGCC AGCTCCGCCCAAAGGAAAAAACAGATTTACCAGGCACCTGTGACTCAGTCCCCCCCCCCCCCCAA AAGCCCCATCTCTTACTGCTCAACCCTTCGCCCCCCTTTTATCTCTGGCGGCACTTTAGTGGGGT TTTTTTTGGGTGGAATGGGTTTATAGAGCCGTTTCTGTTGGCAACTCAAATTGAAGGCCCCTCGT AACTTTCAATGTCGTTGGGCAAAAAGTTTCATTTACAAGCGACCA Right flanking sequence: Indices 5131000 -- 5131499 AGCAGCAACTACAACAGCAATGACAATGGCCGGCGCAAATATCAATGATATGTTTGTTAAAAAAC ACGACAAGGACAACAAGGACCTACCAACCAGGCGCCACCAGCCGACAAACGAAGCCGTCATGGAA TAAAGTCTGAACATTTTTCGGGTTTTCCATCTGTTTTCACACGGTACTCGCTTCGTTTGCCAGGG CATATTTTTTTAACGCTCATTATCTGTTTGCATGCGAAAATTTAAATCGGTCAATTGAATTGCAT AAATGAATAAATGAAATAAAATCAAGTGAGAATGCATTTAAGATAGAAACAACATTTTTTTTTTT TTTTTTTGCTATTCAAAGTTATAGGGTATCCCACATTCGTTGCCCGTCGAGAATAGAGTTCTTAG AGTTTCTTTTTGGTTTATGCCCTTCTTTTTTTTACTCTTTTTTTTTTTGTTTTGGTTCGGTTTTT TGGTTCACAGCGCTTTTTGGTAGGTCATGTACTTGGCCCCCTTTT Found at i:5131320 original size:1 final size:1 Alignment explanation
Indices: 5131314--5131331 Score: 36 Period size: 1 Copynumber: 18.0 Consensus size: 1 5131304 AGAAACAACA 5131314 TTTTTTTTTTTTTTTTTT 1 TTTTTTTTTTTTTTTTTT 5131332 GCTATTCAAA Statistics Matches: 17, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 17 1.00 ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00 Consensus pattern (1 bp): T Left flanking sequence: Indices 5130814 -- 5131313 CCCCATCTCTTACTGCTCAACCCTTCGCCCCCCTTTTATCTCTGGCGGCACTTTAGTGGGGTTTT TTTTGGGTGGAATGGGTTTATAGAGCCGTTTCTGTTGGCAACTCAAATTGAAGGCCCCTCGTAAC TTTCAATGTCGTTGGGCAAAAAGTTTCATTTACAAGCGACCAGCTTCGGCTTCGGCAGCAGCAAC TACAACAGCAATGACAATGGCCGGCGCAAATATCAATGATATGTTTGTTAAAAAACACGACAAGG ACAACAAGGACCTACCAACCAGGCGCCACCAGCCGACAAACGAAGCCGTCATGGAATAAAGTCTG AACATTTTTCGGGTTTTCCATCTGTTTTCACACGGTACTCGCTTCGTTTGCCAGGGCATATTTTT TTAACGCTCATTATCTGTTTGCATGCGAAAATTTAAATCGGTCAATTGAATTGCATAAATGAATA AATGAAATAAAATCAAGTGAGAATGCATTTAAGATAGAAACAACA Right flanking sequence: Indices 5131332 -- 5131831 GCTATTCAAAGTTATAGGGTATCCCACATTCGTTGCCCGTCGAGAATAGAGTTCTTAGAGTTTCT TTTTGGTTTATGCCCTTCTTTTTTTTACTCTTTTTTTTTTTGTTTTGGTTCGGTTTTTTGGTTCA CAGCGCTTTTTGGTAGGTCATGTACTTGGCCCCCTTTTATGGCCGAAAACGAAGAGGAATTGTCA TGAAGCGGACAAACTTTTGTGCCACGAATCCTTTGGGCGCAACTCCTTGTCGATCCTTTTTCTGT TCCTGCAAATGGAGAATGGCGAATGGCGAAATGCTTAAATGCTGAATGCTGTTCACCACCATCGG AGACCAAGGGCAGCCAATAATTGTAAATTAAAATTGAAATGAATGAAAGCAAATGGTCGATGGAA ATTGTGGACGAAGCTGGAGGGGCTGCGAATGATAGGATGATGGCGGCACCAGTGAAATAGAAACA CAATAATACTCGTTGGGCTGGAATTTCGTAAGCTATAGCCGTGTT Found at i:5131442 original size:6 final size:6 Alignment explanation
Indices: 5131427--5131446 Score: 26 Period size: 6 Copynumber: 3.3 Consensus size: 6 5131417 TTTTTTACTC * * 5131427 TTTTTT TTTTTG TTTTGG TT 1 TTTTTG TTTTTG TTTTTG TT 5131447 CGGTTTTTTG Statistics Matches: 12, Mismatches: 2, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 6 12 1.00 ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85 Consensus pattern (6 bp): TTTTTG Left flanking sequence: Indices 5130927 -- 5131426 TGAAGGCCCCTCGTAACTTTCAATGTCGTTGGGCAAAAAGTTTCATTTACAAGCGACCAGCTTCG GCTTCGGCAGCAGCAACTACAACAGCAATGACAATGGCCGGCGCAAATATCAATGATATGTTTGT TAAAAAACACGACAAGGACAACAAGGACCTACCAACCAGGCGCCACCAGCCGACAAACGAAGCCG TCATGGAATAAAGTCTGAACATTTTTCGGGTTTTCCATCTGTTTTCACACGGTACTCGCTTCGTT TGCCAGGGCATATTTTTTTAACGCTCATTATCTGTTTGCATGCGAAAATTTAAATCGGTCAATTG AATTGCATAAATGAATAAATGAAATAAAATCAAGTGAGAATGCATTTAAGATAGAAACAACATTT TTTTTTTTTTTTTTTGCTATTCAAAGTTATAGGGTATCCCACATTCGTTGCCCGTCGAGAATAGA GTTCTTAGAGTTTCTTTTTGGTTTATGCCCTTCTTTTTTTTACTC Right flanking sequence: Indices 5131447 -- 5131946 CGGTTTTTTGGTTCACAGCGCTTTTTGGTAGGTCATGTACTTGGCCCCCTTTTATGGCCGAAAAC GAAGAGGAATTGTCATGAAGCGGACAAACTTTTGTGCCACGAATCCTTTGGGCGCAACTCCTTGT CGATCCTTTTTCTGTTCCTGCAAATGGAGAATGGCGAATGGCGAAATGCTTAAATGCTGAATGCT GTTCACCACCATCGGAGACCAAGGGCAGCCAATAATTGTAAATTAAAATTGAAATGAATGAAAGC AAATGGTCGATGGAAATTGTGGACGAAGCTGGAGGGGCTGCGAATGATAGGATGATGGCGGCACC AGTGAAATAGAAACACAATAATACTCGTTGGGCTGGAATTTCGTAAGCTATAGCCGTGTTTAGTG TTAGTGGGGCAAAGTGCGGATGGAAAGCCAGACGGAAAAGCTGAATGGAGCTGCATGAAAAAGTT TTGCTACAGTGGTTATGCGCATATTTTTCGATCATAAAGAATATA Found at i:5131696 original size:6 final size:6 Alignment explanation
Indices: 5131675--5131696 Score: 28 Period size: 6 Copynumber: 3.5 Consensus size: 6 5131665 GGCAGCCAAT * 5131675 AATTGTA AATTAA AATTGA AAT 1 AATTG-A AATTGA AATTGA AAT 5131697 GAATGAAAGC Statistics Matches: 13, Mismatches: 2, Indels: 1 0.81 0.12 0.06 Matches are distributed among these distances: 6 9 0.69 7 4 0.31 ACGTcount: A:0.55, C:0.00, G:0.09, T:0.36 Consensus pattern (6 bp): AATTGA Left flanking sequence: Indices 5131175 -- 5131674 ACTCGCTTCGTTTGCCAGGGCATATTTTTTTAACGCTCATTATCTGTTTGCATGCGAAAATTTAA ATCGGTCAATTGAATTGCATAAATGAATAAATGAAATAAAATCAAGTGAGAATGCATTTAAGATA GAAACAACATTTTTTTTTTTTTTTTTTGCTATTCAAAGTTATAGGGTATCCCACATTCGTTGCCC GTCGAGAATAGAGTTCTTAGAGTTTCTTTTTGGTTTATGCCCTTCTTTTTTTTACTCTTTTTTTT TTTGTTTTGGTTCGGTTTTTTGGTTCACAGCGCTTTTTGGTAGGTCATGTACTTGGCCCCCTTTT ATGGCCGAAAACGAAGAGGAATTGTCATGAAGCGGACAAACTTTTGTGCCACGAATCCTTTGGGC GCAACTCCTTGTCGATCCTTTTTCTGTTCCTGCAAATGGAGAATGGCGAATGGCGAAATGCTTAA ATGCTGAATGCTGTTCACCACCATCGGAGACCAAGGGCAGCCAAT Right flanking sequence: Indices 5131697 -- 5132196 GAATGAAAGCAAATGGTCGATGGAAATTGTGGACGAAGCTGGAGGGGCTGCGAATGATAGGATGA TGGCGGCACCAGTGAAATAGAAACACAATAATACTCGTTGGGCTGGAATTTCGTAAGCTATAGCC GTGTTTAGTGTTAGTGGGGCAAAGTGCGGATGGAAAGCCAGACGGAAAAGCTGAATGGAGCTGCA TGAAAAAGTTTTGCTACAGTGGTTATGCGCATATTTTTCGATCATAAAGAATATAGAAAATATAT ATTCAGGTATGCCACAATATTTTTGAATAGAAAAGCTAATAGTAGTTGTAGTTTTTTTCTTTTTT TTTTTTTTTTTTGGTTATAACTAACTATTCTTGCCCCACTGTGCGCAGCCGCAGCAGAACGATAA CTGCGCTTACAATGGCCTACCATCGCTATGTCGCTATGTTTCTGTCCATCCAACTGTCCGTATAG CCGTTGTATGGCCCAGCCCATTTGTGTGTCCGCATGTCCCTGTAT Found at i:5132014 original size:1 final size:1 Alignment explanation
Indices: 5132008--5132033 Score: 45 Period size: 1 Copynumber: 26.0 Consensus size: 1 5131998 GTAGTTGTAG * 5132008 TTTTTTTCTTTTTTTTTTTTTTTTTT 1 TTTTTTTTTTTTTTTTTTTTTTTTTT 5132034 GGTTATAACT Statistics Matches: 23, Mismatches: 2, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 1 23 1.00 ACGTcount: A:0.00, C:0.04, G:0.00, T:0.96 Consensus pattern (1 bp): T Left flanking sequence: Indices 5131508 -- 5132007 AAACGAAGAGGAATTGTCATGAAGCGGACAAACTTTTGTGCCACGAATCCTTTGGGCGCAACTCC TTGTCGATCCTTTTTCTGTTCCTGCAAATGGAGAATGGCGAATGGCGAAATGCTTAAATGCTGAA TGCTGTTCACCACCATCGGAGACCAAGGGCAGCCAATAATTGTAAATTAAAATTGAAATGAATGA AAGCAAATGGTCGATGGAAATTGTGGACGAAGCTGGAGGGGCTGCGAATGATAGGATGATGGCGG CACCAGTGAAATAGAAACACAATAATACTCGTTGGGCTGGAATTTCGTAAGCTATAGCCGTGTTT AGTGTTAGTGGGGCAAAGTGCGGATGGAAAGCCAGACGGAAAAGCTGAATGGAGCTGCATGAAAA AGTTTTGCTACAGTGGTTATGCGCATATTTTTCGATCATAAAGAATATAGAAAATATATATTCAG GTATGCCACAATATTTTTGAATAGAAAAGCTAATAGTAGTTGTAG Right flanking sequence: Indices 5132034 -- 5132533 GGTTATAACTAACTATTCTTGCCCCACTGTGCGCAGCCGCAGCAGAACGATAACTGCGCTTACAA TGGCCTACCATCGCTATGTCGCTATGTTTCTGTCCATCCAACTGTCCGTATAGCCGTTGTATGGC CCAGCCCATTTGTGTGTCCGCATGTCCCTGTATCCTTATGTCCCAGTGTCCTGTCCGTTTGGATG CGGGCATTATGCGTGGGCACAATGCATTAGTTAAATGTAACAAAAGCGTTCAAAGAGCGGCCTAT TCAGCGCGTGTTGCTGCTGGCTGGCTGGCACAGAGAATTAGGCAGTTGCGATGGCCATTAGGAAT TGAGAACACGACCCATGACCAAGGATTTTGACCATCAGGCATTACGCATACGCACCGTGGGCCAA CCTCAAGCCATCTCTCTCTCTCTCTCTCTCTCTCTTAGGATCTCTGTGAAATAAACAAAAATTTA CATTCATAAATAGAGCTAAGATTGAGCAGTTTTAACCACTGTATC Found at i:5132318 original size:4 final size:4 Alignment explanation
Indices: 5132309--5132322 Score: 28 Period size: 4 Copynumber: 3.5 Consensus size: 4 5132299 GCGTGTTGCT 5132309 GCTG GCTG GCTG GC 1 GCTG GCTG GCTG GC 5132323 ACAGAGAATT Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 4 10 1.00 ACGTcount: A:0.00, C:0.29, G:0.50, T:0.21 Consensus pattern (4 bp): GCTG Left flanking sequence: Indices 5131809 -- 5132308 ATTTCGTAAGCTATAGCCGTGTTTAGTGTTAGTGGGGCAAAGTGCGGATGGAAAGCCAGACGGAA AAGCTGAATGGAGCTGCATGAAAAAGTTTTGCTACAGTGGTTATGCGCATATTTTTCGATCATAA AGAATATAGAAAATATATATTCAGGTATGCCACAATATTTTTGAATAGAAAAGCTAATAGTAGTT GTAGTTTTTTTCTTTTTTTTTTTTTTTTTTGGTTATAACTAACTATTCTTGCCCCACTGTGCGCA GCCGCAGCAGAACGATAACTGCGCTTACAATGGCCTACCATCGCTATGTCGCTATGTTTCTGTCC ATCCAACTGTCCGTATAGCCGTTGTATGGCCCAGCCCATTTGTGTGTCCGCATGTCCCTGTATCC TTATGTCCCAGTGTCCTGTCCGTTTGGATGCGGGCATTATGCGTGGGCACAATGCATTAGTTAAA TGTAACAAAAGCGTTCAAAGAGCGGCCTATTCAGCGCGTGTTGCT Right flanking sequence: Indices 5132323 -- 5132822 ACAGAGAATTAGGCAGTTGCGATGGCCATTAGGAATTGAGAACACGACCCATGACCAAGGATTTT GACCATCAGGCATTACGCATACGCACCGTGGGCCAACCTCAAGCCATCTCTCTCTCTCTCTCTCT CTCTCTTAGGATCTCTGTGAAATAAACAAAAATTTACATTCATAAATAGAGCTAAGATTGAGCAG TTTTAACCACTGTATCGAAATAGTAGTTAACAAGCGAAAATTTAGCTCGGACCGAATGAATTTGT GGAAAATTCGAAATCCATCAGTTATTGTTTTTTTTTTGTTTTTTTTCAGTCAGTTCGCATCCGCA TCCTGTTGGTGGCCCCTTCAACCCAAATACCTTCATCGCATGCCATTGTGCAGTTTATCAATCTC GAATTTGATTTCCTAGTGTGAAATCTGACACGCGATTCGCATCATTGCGATTCGATTGTTGAGCA CCATGTGACAAATTCGTCCAATGGCACGAATAATACCACCATTTT Found at i:5132441 original size:2 final size:2 Alignment explanation
Indices: 5132434--5132458 Score: 50 Period size: 2 Copynumber: 12.5 Consensus size: 2 5132424 CCTCAAGCCA 5132434 TC TC TC TC TC TC TC TC TC TC TC TC T 1 TC TC TC TC TC TC TC TC TC TC TC TC T 5132459 TAGGATCTCT Statistics Matches: 23, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 23 1.00 ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52 Consensus pattern (2 bp): TC Left flanking sequence: Indices 5131934 -- 5132433 CATAAAGAATATAGAAAATATATATTCAGGTATGCCACAATATTTTTGAATAGAAAAGCTAATAG TAGTTGTAGTTTTTTTCTTTTTTTTTTTTTTTTTTGGTTATAACTAACTATTCTTGCCCCACTGT GCGCAGCCGCAGCAGAACGATAACTGCGCTTACAATGGCCTACCATCGCTATGTCGCTATGTTTC TGTCCATCCAACTGTCCGTATAGCCGTTGTATGGCCCAGCCCATTTGTGTGTCCGCATGTCCCTG TATCCTTATGTCCCAGTGTCCTGTCCGTTTGGATGCGGGCATTATGCGTGGGCACAATGCATTAG TTAAATGTAACAAAAGCGTTCAAAGAGCGGCCTATTCAGCGCGTGTTGCTGCTGGCTGGCTGGCA CAGAGAATTAGGCAGTTGCGATGGCCATTAGGAATTGAGAACACGACCCATGACCAAGGATTTTG ACCATCAGGCATTACGCATACGCACCGTGGGCCAACCTCAAGCCA Right flanking sequence: Indices 5132459 -- 5132958 TAGGATCTCTGTGAAATAAACAAAAATTTACATTCATAAATAGAGCTAAGATTGAGCAGTTTTAA CCACTGTATCGAAATAGTAGTTAACAAGCGAAAATTTAGCTCGGACCGAATGAATTTGTGGAAAA TTCGAAATCCATCAGTTATTGTTTTTTTTTTGTTTTTTTTCAGTCAGTTCGCATCCGCATCCTGT TGGTGGCCCCTTCAACCCAAATACCTTCATCGCATGCCATTGTGCAGTTTATCAATCTCGAATTT GATTTCCTAGTGTGAAATCTGACACGCGATTCGCATCATTGCGATTCGATTGTTGAGCACCATGT GACAAATTCGTCCAATGGCACGAATAATACCACCATTTTTGCTGGCAACATGCCACGCCCATCCT GCAGGCGGCATAAATCAATTAGCATTAAGGCTGGGCAAACAGCCTGAAAAAAAAGTAAAAAAAAA ATAAAGAAAAAATAAAGAAAAAATCAAATAAAACAGAAAATAAAG Found at i:5132616 original size:1 final size:1 Alignment explanation
Indices: 5132610--5132628 Score: 31 Period size: 1 Copynumber: 19.0 Consensus size: 1 5132600 TCAGTTATTG * 5132610 TTTTTTTTTTGTTTTTTTT 1 TTTTTTTTTTTTTTTTTTT 5132629 CAGTCAGTTC Statistics Matches: 16, Mismatches: 2, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 1 16 1.00 ACGTcount: A:0.00, C:0.00, G:0.05, T:0.95 Consensus pattern (1 bp): T Left flanking sequence: Indices 5132110 -- 5132609 CGCTATGTCGCTATGTTTCTGTCCATCCAACTGTCCGTATAGCCGTTGTATGGCCCAGCCCATTT GTGTGTCCGCATGTCCCTGTATCCTTATGTCCCAGTGTCCTGTCCGTTTGGATGCGGGCATTATG CGTGGGCACAATGCATTAGTTAAATGTAACAAAAGCGTTCAAAGAGCGGCCTATTCAGCGCGTGT TGCTGCTGGCTGGCTGGCACAGAGAATTAGGCAGTTGCGATGGCCATTAGGAATTGAGAACACGA CCCATGACCAAGGATTTTGACCATCAGGCATTACGCATACGCACCGTGGGCCAACCTCAAGCCAT CTCTCTCTCTCTCTCTCTCTCTCTTAGGATCTCTGTGAAATAAACAAAAATTTACATTCATAAAT AGAGCTAAGATTGAGCAGTTTTAACCACTGTATCGAAATAGTAGTTAACAAGCGAAAATTTAGCT CGGACCGAATGAATTTGTGGAAAATTCGAAATCCATCAGTTATTG Right flanking sequence: Indices 5132629 -- 5133128 CAGTCAGTTCGCATCCGCATCCTGTTGGTGGCCCCTTCAACCCAAATACCTTCATCGCATGCCAT TGTGCAGTTTATCAATCTCGAATTTGATTTCCTAGTGTGAAATCTGACACGCGATTCGCATCATT GCGATTCGATTGTTGAGCACCATGTGACAAATTCGTCCAATGGCACGAATAATACCACCATTTTT GCTGGCAACATGCCACGCCCATCCTGCAGGCGGCATAAATCAATTAGCATTAAGGCTGGGCAAAC AGCCTGAAAAAAAAGTAAAAAAAAAATAAAGAAAAAATAAAGAAAAAATCAAATAAAACAGAAAA TAAAGCAAGGCAAGCGTCGAAAATCTGTACAGACCATTGCCCAAAGGGCAAACACTTCACTTATT GTTATCCAGGCACATAAATAAAGTGCCACAAGGGTGGTAGGGGGGAGTGATGCCAGAGGGGCAGC GGGGGCAGCACAAAAGAAAGGCGAAAAATAATAAAGAATGCGAAT Found at i:5132624 original size:6 final size:6 Alignment explanation
Indices: 5132603--5132625 Score: 32 Period size: 6 Copynumber: 4.0 Consensus size: 6 5132593 AAATCCATCA * 5132603 GTTATT GTTTTT -TTTTT GTTTTT 1 GTTTTT GTTTTT GTTTTT GTTTTT 5132626 TTTCAGTCAG Statistics Matches: 15, Mismatches: 1, Indels: 2 0.83 0.06 0.11 Matches are distributed among these distances: 5 5 0.33 6 10 0.67 ACGTcount: A:0.04, C:0.00, G:0.13, T:0.83 Consensus pattern (6 bp): GTTTTT Left flanking sequence: Indices 5132103 -- 5132602 CTACCATCGCTATGTCGCTATGTTTCTGTCCATCCAACTGTCCGTATAGCCGTTGTATGGCCCAG CCCATTTGTGTGTCCGCATGTCCCTGTATCCTTATGTCCCAGTGTCCTGTCCGTTTGGATGCGGG CATTATGCGTGGGCACAATGCATTAGTTAAATGTAACAAAAGCGTTCAAAGAGCGGCCTATTCAG CGCGTGTTGCTGCTGGCTGGCTGGCACAGAGAATTAGGCAGTTGCGATGGCCATTAGGAATTGAG AACACGACCCATGACCAAGGATTTTGACCATCAGGCATTACGCATACGCACCGTGGGCCAACCTC AAGCCATCTCTCTCTCTCTCTCTCTCTCTCTTAGGATCTCTGTGAAATAAACAAAAATTTACATT CATAAATAGAGCTAAGATTGAGCAGTTTTAACCACTGTATCGAAATAGTAGTTAACAAGCGAAAA TTTAGCTCGGACCGAATGAATTTGTGGAAAATTCGAAATCCATCA Right flanking sequence: Indices 5132626 -- 5133125 TTTCAGTCAGTTCGCATCCGCATCCTGTTGGTGGCCCCTTCAACCCAAATACCTTCATCGCATGC CATTGTGCAGTTTATCAATCTCGAATTTGATTTCCTAGTGTGAAATCTGACACGCGATTCGCATC ATTGCGATTCGATTGTTGAGCACCATGTGACAAATTCGTCCAATGGCACGAATAATACCACCATT TTTGCTGGCAACATGCCACGCCCATCCTGCAGGCGGCATAAATCAATTAGCATTAAGGCTGGGCA AACAGCCTGAAAAAAAAGTAAAAAAAAAATAAAGAAAAAATAAAGAAAAAATCAAATAAAACAGA AAATAAAGCAAGGCAAGCGTCGAAAATCTGTACAGACCATTGCCCAAAGGGCAAACACTTCACTT ATTGTTATCCAGGCACATAAATAAAGTGCCACAAGGGTGGTAGGGGGGAGTGATGCCAGAGGGGC AGCGGGGGCAGCACAAAAGAAAGGCGAAAAATAATAAAGAATGCG Found at i:5132649 original size:6 final size:6 Alignment explanation
Indices: 5132638--5132650 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 5132628 TCAGTCAGTT 5132638 CGCATC CGCATC C 1 CGCATC CGCATC C 5132651 TGTTGGTGGC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.15, C:0.54, G:0.15, T:0.15 Consensus pattern (6 bp): CGCATC Left flanking sequence: Indices 5132138 -- 5132637 AACTGTCCGTATAGCCGTTGTATGGCCCAGCCCATTTGTGTGTCCGCATGTCCCTGTATCCTTAT GTCCCAGTGTCCTGTCCGTTTGGATGCGGGCATTATGCGTGGGCACAATGCATTAGTTAAATGTA ACAAAAGCGTTCAAAGAGCGGCCTATTCAGCGCGTGTTGCTGCTGGCTGGCTGGCACAGAGAATT AGGCAGTTGCGATGGCCATTAGGAATTGAGAACACGACCCATGACCAAGGATTTTGACCATCAGG CATTACGCATACGCACCGTGGGCCAACCTCAAGCCATCTCTCTCTCTCTCTCTCTCTCTCTTAGG ATCTCTGTGAAATAAACAAAAATTTACATTCATAAATAGAGCTAAGATTGAGCAGTTTTAACCAC TGTATCGAAATAGTAGTTAACAAGCGAAAATTTAGCTCGGACCGAATGAATTTGTGGAAAATTCG AAATCCATCAGTTATTGTTTTTTTTTTGTTTTTTTTCAGTCAGTT Right flanking sequence: Indices 5132651 -- 5133150 TGTTGGTGGCCCCTTCAACCCAAATACCTTCATCGCATGCCATTGTGCAGTTTATCAATCTCGAA TTTGATTTCCTAGTGTGAAATCTGACACGCGATTCGCATCATTGCGATTCGATTGTTGAGCACCA TGTGACAAATTCGTCCAATGGCACGAATAATACCACCATTTTTGCTGGCAACATGCCACGCCCAT CCTGCAGGCGGCATAAATCAATTAGCATTAAGGCTGGGCAAACAGCCTGAAAAAAAAGTAAAAAA AAAATAAAGAAAAAATAAAGAAAAAATCAAATAAAACAGAAAATAAAGCAAGGCAAGCGTCGAAA ATCTGTACAGACCATTGCCCAAAGGGCAAACACTTCACTTATTGTTATCCAGGCACATAAATAAA GTGCCACAAGGGTGGTAGGGGGGAGTGATGCCAGAGGGGCAGCGGGGGCAGCACAAAAGAAAGGC GAAAAATAATAAAGAATGCGAATAAATACAAATAAACAACCCCGA Found at i:5133914 original size:1 final size:1 Alignment explanation
Indices: 5133908--5133925 Score: 36 Period size: 1 Copynumber: 18.0 Consensus size: 1 5133898 ATACCTCGTG 5133908 TTTTTTTTTTTTTTTTTT 1 TTTTTTTTTTTTTTTTTT 5133926 GTTGCCCAGA Statistics Matches: 17, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 17 1.00 ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00 Consensus pattern (1 bp): T Left flanking sequence: Indices 5133408 -- 5133907 CAGCAGTAATAATAGTTATAAACAATACAACACCCCCCCTTTTTAGAAATGTTGTGCACACCACT GTCAACTGCAAGCGAAGTGATACAAAAGATGAAAAAATAAACAAGGATATCAAAAAGCAGACCCC TTGTCACTTATTTAAATGTGCCATCAATATGCAAAAATAACCGAAATGCGAGCCAAGCAAATTGT AGAAATTGTCCAACAGCTTACAATTTAATTAGGCAAACTTAAATAGCCAATCAAAATAAAGTAAT TGCCTGAGAAAAGCCAAATTAAAGCGGCAATTTGCTGGCATTACACATTTGAAATCACCAAGTGA GACAACCAAAGTTGAGCAGCGAAATGCATGTTGAATTGAAAAGTTGATTGTAAAGAGCCGATGTT CATTTTACTTTAGCATAAAGTTAGTTACTTAACTTATTTCCACTCAAATGACTGAACTTCTTTCG CAGCAAAGGAAGCAAATTAACTGGCCAACTAATCGATACCTCGTG Right flanking sequence: Indices 5133926 -- 5134425 GTTGCCCAGAAAATCCAATGAGTAGCAGTTAGCCAATTTGTCGCCGAATGAAAACTCAGCTAGAC AGCAAACACAAAATGTGGACATTTTGTCCTGCACACAGGGCAAAAGCAGCCAAAATCTTTGAGTT GCATCCTGTGGCAACCAATTATGCGACGGCCCAAAAGTCAGTTATCTAACTATCGCCAGGTGCCA AAGCCAGTTGAATGACATGGCACAAAATACGAGAATCGAGTCGACTCATGAATGCCCAATTACAA ACTTTGAAATCATAAACTAAACGAAAAATTTTCAAATCCTTAATGTTTTTTTAGATTAGCAGTAT AACTATAGTTTATGTGTTTCTTCATTTGGTTGCACTTTTTACTTTATTTCGAAATTAATTCGCTT TTAAAACCAAAAATTTGCCTAAATTTCAGAGTAACCCCTTCCCCTTTGACTGACCGCCACCCTTT ATGGCTACACAACCACGGCACACACACACACACACTTTGTGCGAA Found at i:5134406 original size:2 final size:2 Alignment explanation
Indices: 5134399--5134415 Score: 34 Period size: 2 Copynumber: 8.5 Consensus size: 2 5134389 ACAACCACGG 5134399 CA CA CA CA CA CA CA CA C 1 CA CA CA CA CA CA CA CA C 5134416 TTTGTGCGAA Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 15 1.00 ACGTcount: A:0.47, C:0.53, G:0.00, T:0.00 Consensus pattern (2 bp): CA Left flanking sequence: Indices 5133899 -- 5134398 TACCTCGTGTTTTTTTTTTTTTTTTTTGTTGCCCAGAAAATCCAATGAGTAGCAGTTAGCCAATT TGTCGCCGAATGAAAACTCAGCTAGACAGCAAACACAAAATGTGGACATTTTGTCCTGCACACAG GGCAAAAGCAGCCAAAATCTTTGAGTTGCATCCTGTGGCAACCAATTATGCGACGGCCCAAAAGT CAGTTATCTAACTATCGCCAGGTGCCAAAGCCAGTTGAATGACATGGCACAAAATACGAGAATCG AGTCGACTCATGAATGCCCAATTACAAACTTTGAAATCATAAACTAAACGAAAAATTTTCAAATC CTTAATGTTTTTTTAGATTAGCAGTATAACTATAGTTTATGTGTTTCTTCATTTGGTTGCACTTT TTACTTTATTTCGAAATTAATTCGCTTTTAAAACCAAAAATTTGCCTAAATTTCAGAGTAACCCC TTCCCCTTTGACTGACCGCCACCCTTTATGGCTACACAACCACGG Right flanking sequence: Indices 5134416 -- 5134915 TTTGTGCGAAAGTAGCGACATTTATGCGTGTGTGCGTGCCTCGAAAGTGTTCGCCAAGCCACGCC CACCGCCGGCCACACGCCGCCCACCAGTCAGGCCGAGTAAATGGCAATCATTGTAGCCGCTGCCC AGTGCACTGCGAGAAATAAGTGCTAAATCAAATCATATCATATAAAAAATAGCTAAGTTAATCGA AGAAAATTCTTATTATATATCTATTGATTTAAGAATCTTATTTAGAAATCTTTATTCTAGTAAGC TATTATATTTTTAAAGTGCAGTGGCTGCTCTTCGAAAATTGAGTGCTGCTGGCAAATTTGAAGGC GTACCAATCTGGACAGCTTGCCGCGCTTTAACCCATGCCACCCCCACTCGTACTAACGAAAAAGT GAAAAAAACCACCAACACATTTTCCATCGCCAGCAGCATTTTTCTGACAGGCCAACGCTTATCTC TAAAAATAAGTGCATGTTAAAGAGGATAAAAGCCAAAATAAAGCT Found at i:5134580 original size:5 final size:5 Alignment explanation
Indices: 5134570--5134585 Score: 25 Period size: 5 Copynumber: 3.2 Consensus size: 5 5134560 AATAAGTGCT * 5134570 AAATC AAATC ATATC A 1 AAATC AAATC AAATC A 5134586 TATAAAAAAT Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 5 10 1.00 ACGTcount: A:0.56, C:0.19, G:0.00, T:0.25 Consensus pattern (5 bp): AAATC Left flanking sequence: Indices 5134070 -- 5134569 CCAATTATGCGACGGCCCAAAAGTCAGTTATCTAACTATCGCCAGGTGCCAAAGCCAGTTGAATG ACATGGCACAAAATACGAGAATCGAGTCGACTCATGAATGCCCAATTACAAACTTTGAAATCATA AACTAAACGAAAAATTTTCAAATCCTTAATGTTTTTTTAGATTAGCAGTATAACTATAGTTTATG TGTTTCTTCATTTGGTTGCACTTTTTACTTTATTTCGAAATTAATTCGCTTTTAAAACCAAAAAT TTGCCTAAATTTCAGAGTAACCCCTTCCCCTTTGACTGACCGCCACCCTTTATGGCTACACAACC ACGGCACACACACACACACACTTTGTGCGAAAGTAGCGACATTTATGCGTGTGTGCGTGCCTCGA AAGTGTTCGCCAAGCCACGCCCACCGCCGGCCACACGCCGCCCACCAGTCAGGCCGAGTAAATGG CAATCATTGTAGCCGCTGCCCAGTGCACTGCGAGAAATAAGTGCT Right flanking sequence: Indices 5134586 -- 5135085 TATAAAAAATAGCTAAGTTAATCGAAGAAAATTCTTATTATATATCTATTGATTTAAGAATCTTA TTTAGAAATCTTTATTCTAGTAAGCTATTATATTTTTAAAGTGCAGTGGCTGCTCTTCGAAAATT GAGTGCTGCTGGCAAATTTGAAGGCGTACCAATCTGGACAGCTTGCCGCGCTTTAACCCATGCCA CCCCCACTCGTACTAACGAAAAAGTGAAAAAAACCACCAACACATTTTCCATCGCCAGCAGCATT TTTCTGACAGGCCAACGCTTATCTCTAAAAATAAGTGCATGTTAAAGAGGATAAAAGCCAAAATA AAGCTAGCAACTAAATAAAATATAAGTTTTTCTTTTTAAATTATTCGTTACCATAATTCGTTCGT TCGATAAATGACAACTACCATTTGTTGAACTAAAAACAATAAGGTTTAAACTTTTGAGTAAAATG CAGTTTAAACTAAAGTCGTGCTTACATATTTGCCAGCTAGAGGGC Found at i:5134586 original size:5 final size:5 Alignment explanation
Indices: 5134572--5134588 Score: 27 Period size: 5 Copynumber: 3.4 Consensus size: 5 5134562 TAAGTGCTAA * 5134572 ATCAA ATCAT ATCAT AT 1 ATCAT ATCAT ATCAT AT 5134589 AAAAAATAGC Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 5 11 1.00 ACGTcount: A:0.47, C:0.18, G:0.00, T:0.35 Consensus pattern (5 bp): ATCAT Left flanking sequence: Indices 5134072 -- 5134571 AATTATGCGACGGCCCAAAAGTCAGTTATCTAACTATCGCCAGGTGCCAAAGCCAGTTGAATGAC ATGGCACAAAATACGAGAATCGAGTCGACTCATGAATGCCCAATTACAAACTTTGAAATCATAAA CTAAACGAAAAATTTTCAAATCCTTAATGTTTTTTTAGATTAGCAGTATAACTATAGTTTATGTG TTTCTTCATTTGGTTGCACTTTTTACTTTATTTCGAAATTAATTCGCTTTTAAAACCAAAAATTT GCCTAAATTTCAGAGTAACCCCTTCCCCTTTGACTGACCGCCACCCTTTATGGCTACACAACCAC GGCACACACACACACACACTTTGTGCGAAAGTAGCGACATTTATGCGTGTGTGCGTGCCTCGAAA GTGTTCGCCAAGCCACGCCCACCGCCGGCCACACGCCGCCCACCAGTCAGGCCGAGTAAATGGCA ATCATTGTAGCCGCTGCCCAGTGCACTGCGAGAAATAAGTGCTAA Right flanking sequence: Indices 5134589 -- 5135088 AAAAAATAGCTAAGTTAATCGAAGAAAATTCTTATTATATATCTATTGATTTAAGAATCTTATTT AGAAATCTTTATTCTAGTAAGCTATTATATTTTTAAAGTGCAGTGGCTGCTCTTCGAAAATTGAG TGCTGCTGGCAAATTTGAAGGCGTACCAATCTGGACAGCTTGCCGCGCTTTAACCCATGCCACCC CCACTCGTACTAACGAAAAAGTGAAAAAAACCACCAACACATTTTCCATCGCCAGCAGCATTTTT CTGACAGGCCAACGCTTATCTCTAAAAATAAGTGCATGTTAAAGAGGATAAAAGCCAAAATAAAG CTAGCAACTAAATAAAATATAAGTTTTTCTTTTTAAATTATTCGTTACCATAATTCGTTCGTTCG ATAAATGACAACTACCATTTGTTGAACTAAAAACAATAAGGTTTAAACTTTTGAGTAAAATGCAG TTTAAACTAAAGTCGTGCTTACATATTTGCCAGCTAGAGGGCGCC Found at i:5135453 original size:4 final size:4 Alignment explanation
Indices: 5135419--5135481 Score: 77 Period size: 4 Copynumber: 15.8 Consensus size: 4 5135409 AGCTCTTTTC * * * * * * * 5135419 ATAC ATAC ATAT ATAT ATTT ATAC ATAT ATGT ATGT ACAT ATAT ATAT 1 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT 5135467 ATAT ATAT ATAT ATA 1 ATAT ATAT ATAT ATA 5135482 ATTTATACCC Statistics Matches: 50, Mismatches: 9, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 4 50 1.00 ACGTcount: A:0.46, C:0.06, G:0.03, T:0.44 Consensus pattern (4 bp): ATAT Left flanking sequence: Indices 5134919 -- 5135418 AACTAAATAAAATATAAGTTTTTCTTTTTAAATTATTCGTTACCATAATTCGTTCGTTCGATAAA TGACAACTACCATTTGTTGAACTAAAAACAATAAGGTTTAAACTTTTGAGTAAAATGCAGTTTAA ACTAAAGTCGTGCTTACATATTTGCCAGCTAGAGGGCGCCACAGCTAATTTCATTTTATAGCAGC TTTTGAGCTTTACGCTTGCCGCTAGATGGCTCTTAAAAATCCTGTAGTTGACATGTAAAAGTAGA TATCATTTGTAAGCAACGTATGTAAAATATATGTAAGCAACATGTAAAATAAATAAATTTATTAT CTATTATTAATCATTAACTAAACTAATATGTTTCACGATTTATATGGAATATGAATTATATATAA ATAAGGAAAACACGTCTTATTATAAGTTATTAACTAGTTAAATATTTTTTTGCTCCGTTTTATAG GCCTGCGTACTCTTTAACAATGGCTACGATAGCTAAGCTCTTTTC Right flanking sequence: Indices 5135482 -- 5135981 ATTTATACCCCTTGGCTGTCATTAATCCCCTTTAAAGCTTATCAACCGCATTGCGGATCCGCGAT CTGTTTGTTTGTTGTTCCTGTTGTTGTTGCCAAATGGCGAATGGTGTGAACAAGTGCCGGTGGGC GTGGCCGTTCGCCCCTTTTCAGAGGGGTTCAGTAGCTGAAATAACAAACGACGATTATTGTTTAT TAGAATAACAATGACCCAAAGCTGACACGTTTATTAATGGCCCCAAAAGTCAAAGCTCACACACA TTTTGGCCAAGTTCATTCACTCACTTTAATTGCGAACGAAATGCGAATCCTTGATGGTCTTCGCT TTTGCTTATTATTTAATTAATTCATTTATGGACTTTTAATGATTTTATTAGCAATTAATTGTTGA TGGGTTCGCCGGAGGTGCTTATGTGATCACAAACAAAATAAATCATCGAACAGCAAGTGCAATTC CAGAATTTATGTCAGATAAATTAGACGTGATTAAGAAAACTTAAA Found at i:5136153 original size:5 final size:5 Alignment explanation
Indices: 5136143--5136162 Score: 31 Period size: 5 Copynumber: 3.8 Consensus size: 5 5136133 TTTTTACCAT 5136143 TTAAA TTAAA TTACAA TTAA 1 TTAAA TTAAA TTA-AA TTAA 5136163 CCGCAGCTAA Statistics Matches: 14, Mismatches: 0, Indels: 2 0.88 0.00 0.12 Matches are distributed among these distances: 5 9 0.64 6 5 0.36 ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40 Consensus pattern (5 bp): TTAAA Left flanking sequence: Indices 5135643 -- 5136142 GTAGCTGAAATAACAAACGACGATTATTGTTTATTAGAATAACAATGACCCAAAGCTGACACGTT TATTAATGGCCCCAAAAGTCAAAGCTCACACACATTTTGGCCAAGTTCATTCACTCACTTTAATT GCGAACGAAATGCGAATCCTTGATGGTCTTCGCTTTTGCTTATTATTTAATTAATTCATTTATGG ACTTTTAATGATTTTATTAGCAATTAATTGTTGATGGGTTCGCCGGAGGTGCTTATGTGATCACA AACAAAATAAATCATCGAACAGCAAGTGCAATTCCAGAATTTATGTCAGATAAATTAGACGTGAT TAAGAAAACTTAAATACTTTTGGCATGTGCAACACTGTTTAGAGGAATATCAATTCCTTAATTCC TTAAAAGAGCGCAAGTCGTTGACTCTTAGAAAACTCGATCGATCAAAAACCTTTGATAAGTTAAA TTATGGCACAATATATTTACTATTCTATCACCTTTTTTTTACCAT Right flanking sequence: Indices 5136163 -- 5136662 CCGCAGCTAACAATTGCAATTGACATCGATGGCCCGGCAACAATAAATTAAATGCTGCCCGCAAA GTCCATCGTTTTGACAGCCTAATCAAGCCAATTCACCAAAGTAAACAAAGCCGAAAACAATATTA GGGGAATAAAATAAAATAAAAAAAAAAAAAACTTACATAAAGCGCAACAACAAAAGCCCAGCTAA ACAAAAATATTCCGTCACACAAAAAAAAAACAGAGTTCGCAAGCGAGGAGAAAAAACCCAAATAT CGACGGGATGACGATATATATATATGTATATATATAAGCACCAGAAATTGGCAAAAGTGGGGGAT TGGGTTGGTTTCGCGATATTTTGGCAGCGCGGTAGCCAAAAGCCTTCAATGACTCAACGATTGAA TGAATGAATGGCCGATTGACAGACTGCCCATGTCCGCACAGCGAAACACAAGCGGACAGATGGAT AAACGGACAGATGGACAAAGTGACAAACGTACAAGTGGTCATACG Found at i:5136307 original size:5 final size:5 Alignment explanation
Indices: 5136297--5136323 Score: 40 Period size: 5 Copynumber: 5.4 Consensus size: 5 5136287 ATATTAGGGG * * 5136297 AATAA AATAA AATAA AAAAA AAAAA AA 1 AATAA AATAA AATAA AATAA AATAA AA 5136324 CTTACATAAA Statistics Matches: 21, Mismatches: 1, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 5 21 1.00 ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11 Consensus pattern (5 bp): AATAA Left flanking sequence: Indices 5135797 -- 5136296 GGTCTTCGCTTTTGCTTATTATTTAATTAATTCATTTATGGACTTTTAATGATTTTATTAGCAAT TAATTGTTGATGGGTTCGCCGGAGGTGCTTATGTGATCACAAACAAAATAAATCATCGAACAGCA AGTGCAATTCCAGAATTTATGTCAGATAAATTAGACGTGATTAAGAAAACTTAAATACTTTTGGC ATGTGCAACACTGTTTAGAGGAATATCAATTCCTTAATTCCTTAAAAGAGCGCAAGTCGTTGACT CTTAGAAAACTCGATCGATCAAAAACCTTTGATAAGTTAAATTATGGCACAATATATTTACTATT CTATCACCTTTTTTTTACCATTTAAATTAAATTACAATTAACCGCAGCTAACAATTGCAATTGAC ATCGATGGCCCGGCAACAATAAATTAAATGCTGCCCGCAAAGTCCATCGTTTTGACAGCCTAATC AAGCCAATTCACCAAAGTAAACAAAGCCGAAAACAATATTAGGGG Right flanking sequence: Indices 5136324 -- 5136823 CTTACATAAAGCGCAACAACAAAAGCCCAGCTAAACAAAAATATTCCGTCACACAAAAAAAAAAC AGAGTTCGCAAGCGAGGAGAAAAAACCCAAATATCGACGGGATGACGATATATATATATGTATAT ATATAAGCACCAGAAATTGGCAAAAGTGGGGGATTGGGTTGGTTTCGCGATATTTTGGCAGCGCG GTAGCCAAAAGCCTTCAATGACTCAACGATTGAATGAATGAATGGCCGATTGACAGACTGCCCAT GTCCGCACAGCGAAACACAAGCGGACAGATGGATAAACGGACAGATGGACAAAGTGACAAACGTA CAAGTGGTCATACGGACAGACTGACATTTACGGACACAGACACAATTGACGATTAATCGATTAGT TGAAATTTGACACATGCACAATTATCGGTCACGGATGCCACGCAATAGAAACAATAGAAACAACA ACAACATTAACAACAACAACAACAACATTAACAACAACAACAACA Found at i:5136316 original size:1 final size:1 Alignment explanation
Indices: 5136300--5136323 Score: 34 Period size: 1 Copynumber: 24.0 Consensus size: 1 5136290 TTAGGGGAAT * * 5136300 AAAATAAAATAAAAAAAAAAAAAA 1 AAAAAAAAAAAAAAAAAAAAAAAA 5136324 CTTACATAAA Statistics Matches: 19, Mismatches: 4, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 1 19 1.00 ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08 Consensus pattern (1 bp): A Left flanking sequence: Indices 5135800 -- 5136299 CTTCGCTTTTGCTTATTATTTAATTAATTCATTTATGGACTTTTAATGATTTTATTAGCAATTAA TTGTTGATGGGTTCGCCGGAGGTGCTTATGTGATCACAAACAAAATAAATCATCGAACAGCAAGT GCAATTCCAGAATTTATGTCAGATAAATTAGACGTGATTAAGAAAACTTAAATACTTTTGGCATG TGCAACACTGTTTAGAGGAATATCAATTCCTTAATTCCTTAAAAGAGCGCAAGTCGTTGACTCTT AGAAAACTCGATCGATCAAAAACCTTTGATAAGTTAAATTATGGCACAATATATTTACTATTCTA TCACCTTTTTTTTACCATTTAAATTAAATTACAATTAACCGCAGCTAACAATTGCAATTGACATC GATGGCCCGGCAACAATAAATTAAATGCTGCCCGCAAAGTCCATCGTTTTGACAGCCTAATCAAG CCAATTCACCAAAGTAAACAAAGCCGAAAACAATATTAGGGGAAT Right flanking sequence: Indices 5136324 -- 5136823 CTTACATAAAGCGCAACAACAAAAGCCCAGCTAAACAAAAATATTCCGTCACACAAAAAAAAAAC AGAGTTCGCAAGCGAGGAGAAAAAACCCAAATATCGACGGGATGACGATATATATATATGTATAT ATATAAGCACCAGAAATTGGCAAAAGTGGGGGATTGGGTTGGTTTCGCGATATTTTGGCAGCGCG GTAGCCAAAAGCCTTCAATGACTCAACGATTGAATGAATGAATGGCCGATTGACAGACTGCCCAT GTCCGCACAGCGAAACACAAGCGGACAGATGGATAAACGGACAGATGGACAAAGTGACAAACGTA CAAGTGGTCATACGGACAGACTGACATTTACGGACACAGACACAATTGACGATTAATCGATTAGT TGAAATTTGACACATGCACAATTATCGGTCACGGATGCCACGCAATAGAAACAATAGAAACAACA ACAACATTAACAACAACAACAACAACATTAACAACAACAACAACA Found at i:5136443 original size:2 final size:2 Alignment explanation
Indices: 5136436--5136458 Score: 39 Period size: 2 Copynumber: 11.5 Consensus size: 2 5136426 CGGGATGACG * 5136436 AT AT AT AT AT AT GT AT AT AT AT A 1 AT AT AT AT AT AT AT AT AT AT AT A 5136459 AGCACCAGAA Statistics Matches: 19, Mismatches: 2, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 2 19 1.00 ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48 Consensus pattern (2 bp): AT Left flanking sequence: Indices 5135936 -- 5136435 CCAGAATTTATGTCAGATAAATTAGACGTGATTAAGAAAACTTAAATACTTTTGGCATGTGCAAC ACTGTTTAGAGGAATATCAATTCCTTAATTCCTTAAAAGAGCGCAAGTCGTTGACTCTTAGAAAA CTCGATCGATCAAAAACCTTTGATAAGTTAAATTATGGCACAATATATTTACTATTCTATCACCT TTTTTTTACCATTTAAATTAAATTACAATTAACCGCAGCTAACAATTGCAATTGACATCGATGGC CCGGCAACAATAAATTAAATGCTGCCCGCAAAGTCCATCGTTTTGACAGCCTAATCAAGCCAATT CACCAAAGTAAACAAAGCCGAAAACAATATTAGGGGAATAAAATAAAATAAAAAAAAAAAAAACT TACATAAAGCGCAACAACAAAAGCCCAGCTAAACAAAAATATTCCGTCACACAAAAAAAAAACAG AGTTCGCAAGCGAGGAGAAAAAACCCAAATATCGACGGGATGACG Right flanking sequence: Indices 5136459 -- 5136958 AGCACCAGAAATTGGCAAAAGTGGGGGATTGGGTTGGTTTCGCGATATTTTGGCAGCGCGGTAGC CAAAAGCCTTCAATGACTCAACGATTGAATGAATGAATGGCCGATTGACAGACTGCCCATGTCCG CACAGCGAAACACAAGCGGACAGATGGATAAACGGACAGATGGACAAAGTGACAAACGTACAAGT GGTCATACGGACAGACTGACATTTACGGACACAGACACAATTGACGATTAATCGATTAGTTGAAA TTTGACACATGCACAATTATCGGTCACGGATGCCACGCAATAGAAACAATAGAAACAACAACAAC ATTAACAACAACAACAACAACATTAACAACAACAACAACAACAAATCGAAATAGGGATACATTTA TGGGTCGTCAGGTGGCCGCCGTAGAAACTGGAAACCCAATTAACGTTGTCAGGCGAACACAGAAT GCACGTATTGGCGAGTTATCAAGAAATGTCATTATTTTGAACCCC Found at i:5136558 original size:4 final size:4 Alignment explanation
Indices: 5136549--5136562 Score: 28 Period size: 4 Copynumber: 3.5 Consensus size: 4 5136539 ACTCAACGAT 5136549 TGAA TGAA TGAA TG 1 TGAA TGAA TGAA TG 5136563 GCCGATTGAC Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 4 10 1.00 ACGTcount: A:0.43, C:0.00, G:0.29, T:0.29 Consensus pattern (4 bp): TGAA Left flanking sequence: Indices 5136049 -- 5136548 CGTTGACTCTTAGAAAACTCGATCGATCAAAAACCTTTGATAAGTTAAATTATGGCACAATATAT TTACTATTCTATCACCTTTTTTTTACCATTTAAATTAAATTACAATTAACCGCAGCTAACAATTG CAATTGACATCGATGGCCCGGCAACAATAAATTAAATGCTGCCCGCAAAGTCCATCGTTTTGACA GCCTAATCAAGCCAATTCACCAAAGTAAACAAAGCCGAAAACAATATTAGGGGAATAAAATAAAA TAAAAAAAAAAAAAACTTACATAAAGCGCAACAACAAAAGCCCAGCTAAACAAAAATATTCCGTC ACACAAAAAAAAAACAGAGTTCGCAAGCGAGGAGAAAAAACCCAAATATCGACGGGATGACGATA TATATATATGTATATATATAAGCACCAGAAATTGGCAAAAGTGGGGGATTGGGTTGGTTTCGCGA TATTTTGGCAGCGCGGTAGCCAAAAGCCTTCAATGACTCAACGAT Right flanking sequence: Indices 5136563 -- 5137062 GCCGATTGACAGACTGCCCATGTCCGCACAGCGAAACACAAGCGGACAGATGGATAAACGGACAG ATGGACAAAGTGACAAACGTACAAGTGGTCATACGGACAGACTGACATTTACGGACACAGACACA ATTGACGATTAATCGATTAGTTGAAATTTGACACATGCACAATTATCGGTCACGGATGCCACGCA ATAGAAACAATAGAAACAACAACAACATTAACAACAACAACAACAACATTAACAACAACAACAAC AACAAATCGAAATAGGGATACATTTATGGGTCGTCAGGTGGCCGCCGTAGAAACTGGAAACCCAA TTAACGTTGTCAGGCGAACACAGAATGCACGTATTGGCGAGTTATCAAGAAATGTCATTATTTTG AACCCCAAAACATTGAGGCTTACATACACACATTACTTTTAGATATATATATTTTTTGATTTATT TATTTATTTATTTTTATTTATTATATACATGCATCCTAAAATGTA Found at i:5136780 original size:3 final size:3 Alignment explanation
Indices: 5136772--5136827 Score: 84 Period size: 3 Copynumber: 18.7 Consensus size: 3 5136762 AAACAATAGA ** ** 5136772 AAC AAC AAC AAC ATT AAC AAC AAC AAC AAC AAC ATT AAC AAC AAC AAC 1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC 5136820 AAC AAC AA 1 AAC AAC AA 5136828 ATCGAAATAG Statistics Matches: 45, Mismatches: 8, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 3 45 1.00 ACGTcount: A:0.64, C:0.29, G:0.00, T:0.07 Consensus pattern (3 bp): AAC Left flanking sequence: Indices 5136272 -- 5136771 ACAAAGCCGAAAACAATATTAGGGGAATAAAATAAAATAAAAAAAAAAAAAACTTACATAAAGCG CAACAACAAAAGCCCAGCTAAACAAAAATATTCCGTCACACAAAAAAAAAACAGAGTTCGCAAGC GAGGAGAAAAAACCCAAATATCGACGGGATGACGATATATATATATGTATATATATAAGCACCAG AAATTGGCAAAAGTGGGGGATTGGGTTGGTTTCGCGATATTTTGGCAGCGCGGTAGCCAAAAGCC TTCAATGACTCAACGATTGAATGAATGAATGGCCGATTGACAGACTGCCCATGTCCGCACAGCGA AACACAAGCGGACAGATGGATAAACGGACAGATGGACAAAGTGACAAACGTACAAGTGGTCATAC GGACAGACTGACATTTACGGACACAGACACAATTGACGATTAATCGATTAGTTGAAATTTGACAC ATGCACAATTATCGGTCACGGATGCCACGCAATAGAAACAATAGA Right flanking sequence: Indices 5136828 -- 5137327 ATCGAAATAGGGATACATTTATGGGTCGTCAGGTGGCCGCCGTAGAAACTGGAAACCCAATTAAC GTTGTCAGGCGAACACAGAATGCACGTATTGGCGAGTTATCAAGAAATGTCATTATTTTGAACCC CAAAACATTGAGGCTTACATACACACATTACTTTTAGATATATATATTTTTTGATTTATTTATTT ATTTATTTTTATTTATTATATACATGCATCCTAAAATGTATATTTCAAGGTCTGCTATGACTTCC ATAGCTAAAAGCGCAATTTTGAATACTAAAAAGAGATCATTAAATAGGCCTCATCCCATCTTAAT TATTCATTGATTTCGTTTTAATGCCACAGTTTTTTTTTTTTTTTTTATCGACAAAAGCTTCGTTT GTTTTTGCTCTGGCGATCATAACGAGATTATGACAGTTTTGTGAATCGTTTGCCGTTTTGTTTTA CGATGCCACAATACGAAAATTGCCCTTAACGATCGGCAATCAATG Found at i:5137188 original size:1 final size:1 Alignment explanation
Indices: 5137182--5137198 Score: 34 Period size: 1 Copynumber: 17.0 Consensus size: 1 5137172 AATGCCACAG 5137182 TTTTTTTTTTTTTTTTT 1 TTTTTTTTTTTTTTTTT 5137199 ATCGACAAAA Statistics Matches: 16, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 16 1.00 ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00 Consensus pattern (1 bp): T Left flanking sequence: Indices 5136682 -- 5137181 ACACAGACACAATTGACGATTAATCGATTAGTTGAAATTTGACACATGCACAATTATCGGTCACG GATGCCACGCAATAGAAACAATAGAAACAACAACAACATTAACAACAACAACAACAACATTAACA ACAACAACAACAACAAATCGAAATAGGGATACATTTATGGGTCGTCAGGTGGCCGCCGTAGAAAC TGGAAACCCAATTAACGTTGTCAGGCGAACACAGAATGCACGTATTGGCGAGTTATCAAGAAATG TCATTATTTTGAACCCCAAAACATTGAGGCTTACATACACACATTACTTTTAGATATATATATTT TTTGATTTATTTATTTATTTATTTTTATTTATTATATACATGCATCCTAAAATGTATATTTCAAG GTCTGCTATGACTTCCATAGCTAAAAGCGCAATTTTGAATACTAAAAAGAGATCATTAAATAGGC CTCATCCCATCTTAATTATTCATTGATTTCGTTTTAATGCCACAG Right flanking sequence: Indices 5137199 -- 5137698 ATCGACAAAAGCTTCGTTTGTTTTTGCTCTGGCGATCATAACGAGATTATGACAGTTTTGTGAAT CGTTTGCCGTTTTGTTTTACGATGCCACAATACGAAAATTGCCCTTAACGATCGGCAATCAATGC CAAGACTGGAGCAACTTTCCATAGATCAGAAATCAATATTTTAATGGCAAAAGGCCCCAAAATAA ATTTGCACACATAATGTAAATATTTATTTGGCTATTTTACAAGCGAATCTTGTTGTATTCTCAAA CTGGCACCCTGCCACGATTTTAATGGGCGTAGGTGAGCGCGATTCGAATGGGGTTTTATTTGAAA AAAGTGCGGGGGGGTGGGGGGTTGTTGGTTGTGCATTAAACTTTCCAGTTTTTTGGGGCGAAACT TTTGTTTAGACGCCGACAAAGATATACAACAAGTTTATAGGCTTTGCAGTGTATAAATTTCAATT TATTCCATTTTTTAATAGTTTCAAAGTGCTTAAATCAGTATGGCC Found at