TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: arm_X assembled 2004-3-18 md5checksum:d304f6c7f10939bacf40e33958147342 Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 22224390 ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29 Warning! 8514 characters in sequence are not A, C, G, or T Found at i: i:13609834 original size:11 final size:11 Alignment explanation
Indices: 13609820--13609853 Score: 43 Period size: 12 Copynumber: 2.9 Consensus size: 11 13609810 AAAAACAAAT 13609820 CCAACACCACA 1 CCAACACCACA 13609831 CCAACACACACA 1 CCAACAC-CACA * 13609843 CCTCACACCAC 1 CC-AACACCAC 13609854 GCACACACTG Statistics Matches: 20, Mismatches: 1, Indels: 3 0.83 0.04 0.12 Matches are distributed among these distances: 11 7 0.35 12 9 0.45 13 4 0.20 ACGTcount: A:0.41, C:0.56, G:0.00, T:0.03 Consensus pattern (11 bp): CCAACACCACA Left flanking sequence: Indices 13609320 -- 13609819 ACCCACCACGCCGACAAATACACCTCACGCCAAATACACACCATCATCAGGCTGCATGAACAAGC AACGAATGAAAATTGAATTGCAACTCAAGCAAACCAATTGTTTAGAGCAATGAAAAACAACAATT AAAGCATCTTGTAAACAGATAGAAGCGTTAAAACCAAAAACAAAACATTACAGACAATTGATGTT AGAATTAGTGTTCTAGAATATACCCCACACTCCCCACACAATTTTTCAGTTTCTTTGTTATGTAT TTTGAAGCATACCTAGCTGAGCATTTTATTGATTGATTAATTGGTGTTGTGAAAAAAGAAACAAA ATTGATAAGCCCCACACACTAGAGGTGGGTAAAAAAAAATACGATAATTATCGATCTTAGAAACG TTTCCATCTTAGAGCCAAAATTCAACTCTTTCTCAACGTTAACTCTGTCTTTCTTTTTCCAAACA AAAAATATCCAAAATTTGCCTGAAAAAAACAAAACAAAAACAAAT Right flanking sequence: Indices 13609854 -- 13610353 GCACACACTGCCATCGACCGTGTCTGTCATCGATAATCGATACTCGATAAACACAGCAACGAGAC AGGACTCTCATCACCCATACGCAGTGGTTACCTGAAGCGCAAGACCTACCTGAGCCACCACTAGA GCAGCAGCAGAGATGCAGATACAGCTATGCAGCTATATAGATCGATCCATCAGATAGAAGTGAAA CCACAGTCCTCAGAACCCCAAAATAGAACTCCTTTCGACATAGCGAAAAAAAAAACATATATATT AGAGCCAATGGACAACAAGACCGATGCCTCCATATGCCACATCTGTGTATATACCATATAAATAT ATATTTATATACTATGCGCGATATATTGAAAGTTTAATGGTGTAATATATACATATATATATATC AAATACCAAAATTTGCAAATGAGAAAAAAAAAAACAATTGTACAACATTTAACAAAAGTCAAATG TGTCACGCGGTGAGTATGCATATAAAGCACAGATTCTAATTGCAT Found at i:13611503 original size:11 final size:11 Alignment explanation
Indices: 13611476--13611506 Score: 46 Period size: 11 Copynumber: 2.7 Consensus size: 11 13611466 GAATCTGACC 13611476 CATATAGTAATA 1 CATATA-TAATA 13611488 CATATATAATA 1 CATATATAATA * 13611499 TATATATA 1 CATATATA 13611507 CATCTCTAGG Statistics Matches: 18, Mismatches: 1, Indels: 1 0.90 0.05 0.05 Matches are distributed among these distances: 11 12 0.67 12 6 0.33 ACGTcount: A:0.52, C:0.06, G:0.03, T:0.39 Consensus pattern (11 bp): CATATATAATA Left flanking sequence: Indices 13610976 -- 13611475 AAGTATAAATTAACGGCTTCCGTAAACCGAATTAAAACCTAAAAGTAGATATATGTATCTATGTG TATGTGCGTGTAAAATTGACAAAAATACAAATAATCGGTTCTTAAGAAAAAAAAAACAAACGAAA AGGCAAAAACTTCATGAAATTGAATACAATCTCTTAACTGGCCCCAGAAATTTCAAATCTCCATA ATTGTGATAGTCTTTCGCTACCAAAAGTTATTTAAAAAGATGATGAAACAGCAAAAAATATATAT TTATCTCTACTAAAATTGTTATTCGAAAAGAAAAGACATTTCGGAATGAAACAAAAAAAAAAAAC CGAAACTATTGGATATTGTGTAAACGTAAAACCCGATTTTGTGATACCAAAACTAAAAAAGGAAA CCAAAAAAACCAAAGTTGAGTTCGAATTGAGGCGCGATCAAGCCGAAAACTTAAAAACCTATACA AACAACTCAAGGCGACCTGAAGATTAACGGGCATTGAATCTGACC Right flanking sequence: Indices 13611507 -- 13612006 CATCTCTAGGGTATATATAATACCACTATGTATGCAAAAACCCCAAATTATGGGCTGTCCACGCA AGTTAACTACAAAACTCTCACACATCTTGTAAGCTAAAGAAAACGCTAACCAAAATTGAAGGTAC ACTTGGGACCTTAAGAATAAAAAAGATATATAGATGTATATATGTAATATATACATAATATATAT AATATATATATATATGTATATGTCAGCTGTAATCTGTTCGATCCGTTTAGGTTTACCTAAGCCAA AGTTAGTTGAGTTAAGCGATTAAGATACTTCCTAAACTGAAAAGTAAATGCAAGTTAAAGAGTTT AAACCGATAGTTGTAATGAGAGTCGAGTAATATATATATATATATACCTAAAGCATATACTGTAT ATTTATATAGCGCAACTACCAATTAAGGTCTTTTTGAAGCTTGCTAACTGAAAAAGTGTTCCGAT TAAAGTATTGTCCGGCTATACGTTCCTCTATTCTCCACTTCAGTC Found at i:13611689 original size:11 final size:11 Alignment explanation
Indices: 13611662--13611715 Score: 59 Period size: 11 Copynumber: 5.0 Consensus size: 11 13611652 AATAAAAAAG * 13611662 ATATATAGAT- 1 ATATATATATA * * 13611672 GTATATATGTA 1 ATATATATATA * 13611683 ATATATACATA 1 ATATATATATA ** 13611694 ATATATATAAT 1 ATATATATATA 13611705 ATATATATATA 1 ATATATATATA 13611716 TGTATATGTC Statistics Matches: 32, Mismatches: 11, Indels: 1 0.73 0.25 0.02 Matches are distributed among these distances: 10 7 0.22 11 25 0.78 ACGTcount: A:0.50, C:0.02, G:0.06, T:0.43 Consensus pattern (11 bp): ATATATATATA Left flanking sequence: Indices 13611162 -- 13611661 ATCTCCATAATTGTGATAGTCTTTCGCTACCAAAAGTTATTTAAAAAGATGATGAAACAGCAAAA AATATATATTTATCTCTACTAAAATTGTTATTCGAAAAGAAAAGACATTTCGGAATGAAACAAAA AAAAAAAACCGAAACTATTGGATATTGTGTAAACGTAAAACCCGATTTTGTGATACCAAAACTAA AAAAGGAAACCAAAAAAACCAAAGTTGAGTTCGAATTGAGGCGCGATCAAGCCGAAAACTTAAAA ACCTATACAAACAACTCAAGGCGACCTGAAGATTAACGGGCATTGAATCTGACCCATATAGTAAT ACATATATAATATATATATACATCTCTAGGGTATATATAATACCACTATGTATGCAAAAACCCCA AATTATGGGCTGTCCACGCAAGTTAACTACAAAACTCTCACACATCTTGTAAGCTAAAGAAAACG CTAACCAAAATTGAAGGTACACTTGGGACCTTAAGAATAAAAAAG Right flanking sequence: Indices 13611716 -- 13612215 TGTATATGTCAGCTGTAATCTGTTCGATCCGTTTAGGTTTACCTAAGCCAAAGTTAGTTGAGTTA AGCGATTAAGATACTTCCTAAACTGAAAAGTAAATGCAAGTTAAAGAGTTTAAACCGATAGTTGT AATGAGAGTCGAGTAATATATATATATATATACCTAAAGCATATACTGTATATTTATATAGCGCA ACTACCAATTAAGGTCTTTTTGAAGCTTGCTAACTGAAAAAGTGTTCCGATTAAAGTATTGTCCG GCTATACGTTCCTCTATTCTCCACTTCAGTCGATTTTTAGCTGTATTTCAATTTTAATTATCCTT TGTAGCAAGTATTAAACTTTAAACTGATGGAAGATCTTATAGAGTTTAAGATGAATCTCGACCTA TGAAATGTTTATCCTATATAAGTGAGTAGTTCAAGATTTAAGGATGAGGTAAAACGATATTTAGA CGCAAGTCTCCTATTAAATAACACACCAGATACTCATAGAGGTCA Found at i:13611699 original size:13 final size:13 Alignment explanation
Indices: 13611662--13611715 Score: 53 Period size: 13 Copynumber: 4.0 Consensus size: 13 13611652 AATAAAAAAG * * 13611662 ATATATAGATGTA 1 ATATATATATATA * 13611675 TATATGTAATATATA 1 -ATATAT-ATATATA 13611690 CATA-ATATATATA 1 -ATATATATATATA 13611703 ATATATATATATA 1 ATATATATATATA 13611716 TGTATATGTC Statistics Matches: 33, Mismatches: 5, Indels: 5 0.77 0.12 0.12 Matches are distributed among these distances: 12 3 0.09 13 16 0.48 14 6 0.18 15 8 0.24 ACGTcount: A:0.50, C:0.02, G:0.06, T:0.43 Consensus pattern (13 bp): ATATATATATATA Left flanking sequence: Indices 13611162 -- 13611661 ATCTCCATAATTGTGATAGTCTTTCGCTACCAAAAGTTATTTAAAAAGATGATGAAACAGCAAAA AATATATATTTATCTCTACTAAAATTGTTATTCGAAAAGAAAAGACATTTCGGAATGAAACAAAA AAAAAAAACCGAAACTATTGGATATTGTGTAAACGTAAAACCCGATTTTGTGATACCAAAACTAA AAAAGGAAACCAAAAAAACCAAAGTTGAGTTCGAATTGAGGCGCGATCAAGCCGAAAACTTAAAA ACCTATACAAACAACTCAAGGCGACCTGAAGATTAACGGGCATTGAATCTGACCCATATAGTAAT ACATATATAATATATATATACATCTCTAGGGTATATATAATACCACTATGTATGCAAAAACCCCA AATTATGGGCTGTCCACGCAAGTTAACTACAAAACTCTCACACATCTTGTAAGCTAAAGAAAACG CTAACCAAAATTGAAGGTACACTTGGGACCTTAAGAATAAAAAAG Right flanking sequence: Indices 13611716 -- 13612215 TGTATATGTCAGCTGTAATCTGTTCGATCCGTTTAGGTTTACCTAAGCCAAAGTTAGTTGAGTTA AGCGATTAAGATACTTCCTAAACTGAAAAGTAAATGCAAGTTAAAGAGTTTAAACCGATAGTTGT AATGAGAGTCGAGTAATATATATATATATATACCTAAAGCATATACTGTATATTTATATAGCGCA ACTACCAATTAAGGTCTTTTTGAAGCTTGCTAACTGAAAAAGTGTTCCGATTAAAGTATTGTCCG GCTATACGTTCCTCTATTCTCCACTTCAGTCGATTTTTAGCTGTATTTCAATTTTAATTATCCTT TGTAGCAAGTATTAAACTTTAAACTGATGGAAGATCTTATAGAGTTTAAGATGAATCTCGACCTA TGAAATGTTTATCCTATATAAGTGAGTAGTTCAAGATTTAAGGATGAGGTAAAACGATATTTAGA CGCAAGTCTCCTATTAAATAACACACCAGATACTCATAGAGGTCA Found at i:13613520 original size:12 final size:12 Alignment explanation
Indices: 13613503--13613542 Score: 48 Period size: 12 Copynumber: 3.2 Consensus size: 12 13613493 AGATAAGTTT 13613503 TACATATGTATG 1 TACATATGTATG 13613515 TACATATATGTATG 1 TAC--ATATGTATG ** 13613529 TATGTATGTATG 1 TACATATGTATG 13613541 TA 1 TA 13613543 TGGCCAAGCT Statistics Matches: 24, Mismatches: 2, Indels: 4 0.80 0.07 0.13 Matches are distributed among these distances: 12 13 0.54 14 11 0.46 ACGTcount: A:0.33, C:0.05, G:0.17, T:0.45 Consensus pattern (12 bp): TACATATGTATG Left flanking sequence: Indices 13613003 -- 13613502 GAGCAAGCCAAATGCAATCTATTTACAAAATCCTAAAAATAAAAGCAAAGCAAGAATTACAAACC AAAACAAATTAAGCTGAGCTGATTCCACGAAAATGGATATATATATATATAGATATATAATGTAA ACCTACCCAAAATTAAGAGATTTTTAAGCCAACAGTTGAAATTGAAATATGACAAATAACAAGAG TAAACCAATTGAAATGTGGCAGTAACAAATATTTTTCGATGTAAGCTGTTTGTTAGAAAAATATC GAGTTTCGGTGAATAGAAGAGTGGCTACAAAACCAGTCAATCAATTCACAGAAAATCGATAAGAG AAGCGGTTGGTTCATGACAAGATAACAAAAAAAAAACTGAAAATACAAAACAAATGTTCTATTTG ATGTTGCAAATGAGAAAAATAAATAAAACATGTTATGTGAATAAATATGTGTACAATTTGAATGG ACATTTGGTGCTGCAAATTGTGGGCAGCTTCAACGAGATAAGTTT Right flanking sequence: Indices 13613543 -- 13614042 TGGCCAAGCTAACTAATGTAATAATAAATTAACTCAACAAAATCGCACCAAATGACGAATGCGAT TGCAAGCTGTACTCTTTGTTTGATTAATCAAATGCGATGCTAATCACATTTATAACTCGCAAAAC ATACAGCTAGCCAGTTTAACGATTGAACGATTGACGGCGTTCCATTTAAATGTGTGTACATAGTA TAGAGGATCAGATACTCTCTACTATTAATCTCTACTATTAAATAAAAAAGGCATAGCTACGCTAA ACAATAGTTTATAGTTGGATAGTTATAGCATTGTTTCACAAATAGTATTATTCGCTTTTAATTAT ATCTGAGTTCCAGTTTGATAATCATTTTCTTTTTTTTGTTTGCCTTGTTTCTAGTTAGAGAGGTC CCACTGTATACGAGCAAAGTACAGTTCCACAGTCATATACAATACTTTATTATCAATCAGGTTTA GGTTGTTTACATTAACTACAAACGTCAGTTGCGAATCGGAATGAA Found at i:13613771 original size:13 final size:13 Alignment explanation
Indices: 13613753--13613778 Score: 52 Period size: 13 Copynumber: 2.0 Consensus size: 13 13613743 GATCAGATAC 13613753 TCTCTACTATTAA 1 TCTCTACTATTAA 13613766 TCTCTACTATTAA 1 TCTCTACTATTAA 13613779 ATAAAAAAGG Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 13 1.00 ACGTcount: A:0.31, C:0.23, G:0.00, T:0.46 Consensus pattern (13 bp): TCTCTACTATTAA Left flanking sequence: Indices 13613253 -- 13613752 GAAAAATATCGAGTTTCGGTGAATAGAAGAGTGGCTACAAAACCAGTCAATCAATTCACAGAAAA TCGATAAGAGAAGCGGTTGGTTCATGACAAGATAACAAAAAAAAAACTGAAAATACAAAACAAAT GTTCTATTTGATGTTGCAAATGAGAAAAATAAATAAAACATGTTATGTGAATAAATATGTGTACA ATTTGAATGGACATTTGGTGCTGCAAATTGTGGGCAGCTTCAACGAGATAAGTTTTACATATGTA TGTACATATATGTATGTATGTATGTATGTATGGCCAAGCTAACTAATGTAATAATAAATTAACTC AACAAAATCGCACCAAATGACGAATGCGATTGCAAGCTGTACTCTTTGTTTGATTAATCAAATGC GATGCTAATCACATTTATAACTCGCAAAACATACAGCTAGCCAGTTTAACGATTGAACGATTGAC GGCGTTCCATTTAAATGTGTGTACATAGTATAGAGGATCAGATAC Right flanking sequence: Indices 13613779 -- 13614278 ATAAAAAAGGCATAGCTACGCTAAACAATAGTTTATAGTTGGATAGTTATAGCATTGTTTCACAA ATAGTATTATTCGCTTTTAATTATATCTGAGTTCCAGTTTGATAATCATTTTCTTTTTTTTGTTT GCCTTGTTTCTAGTTAGAGAGGTCCCACTGTATACGAGCAAAGTACAGTTCCACAGTCATATACA ATACTTTATTATCAATCAGGTTTAGGTTGTTTACATTAACTACAAACGTCAGTTGCGAATCGGAA TGAAAATAAAAGGAGGGATGATAGAAAATAGAGGGGTTTTGATATATCAGCTTGATGCCGGAATA CATATAACATTTACAGCTTGGGCAGACCCGCCGAAATGGAGCTCTCGATGCCGCAATGATCCTGG CCACGCAGGATGCGGAAGAAACCATGATCGCCCCAATCGGTGTTCCACGAGTTACCAATTAGCCA GTACGGAATCTTCTCCTCGCCCCAAACGCCCCAGCCCAAAATGCG Found at i:13616216 original size:15 final size:14 Alignment explanation
Indices: 13616180--13616230 Score: 49 Period size: 14 Copynumber: 3.6 Consensus size: 14 13616170 TAGTCTGAAA * * 13616180 TAAATAAACGCA-T 1 TAACTAAATGCACT 13616193 TATACTAAATAGCACT 1 TA-ACTAAAT-GCACT * * 13616209 TCACTAAATGTACT 1 TAACTAAATGCACT 13616223 TAACTAAA 1 TAACTAAA 13616231 GACTACGATC Statistics Matches: 30, Mismatches: 5, Indels: 5 0.75 0.12 0.12 Matches are distributed among these distances: 13 2 0.07 14 16 0.53 15 10 0.33 16 2 0.07 ACGTcount: A:0.47, C:0.18, G:0.06, T:0.29 Consensus pattern (14 bp): TAACTAAATGCACT Left flanking sequence: Indices 13615680 -- 13616179 AGGAAACGGGAAAATGCAATTTTCTTGTCACGTCAGCAAGAAAAGGGTTGGAAACAAAGGAATTT ACCGTCCAGGTTTTGGCCTTACTGCGCACCACCTCGATGAACTCATCCGAGAGCAGTGACGGCTC ACCGGACGTGAGTGCCGCCACGGAGGCCGCGGTGGCCACCAGGAGCAATAGATTCATTATTCTTG TCCAACGAATTTCCAATGCGCTGACACAGCAAAATTCAAACAAATCACAGCAGTAAAATGGTGGA AAATGACGCGTCGTATTAAGCGGGCTCTCTGCTCCGTTCTTGTTTTCGTACTGCCCGTGAAATTC GGACGGGTAATGCTCTTTAAGCGTCTATTATTCTCTTGTTTTTGTTCTGTCGCACAAAAAAAAAA AAAAATGGTTCGCGCCCGCTGATTACGCGGCCAGTGTGTGCACACCAATGCAACAGGGCCGTTGC CTATCGAATGTAGAGATGGGCGCGTGATTGGTAACTAGTCTGAAA Right flanking sequence: Indices 13616231 -- 13616730 GACTACGATCACACTAATGCCAATAAATATGCTAAGGAGCACTGTTACTTGAAAGGTGGTTTATT TGCATTTATTTATTTCCATTCGTTGTCGTGGTGCTTAAAATCAGAACTATCGGTAGGCCATCGCA GATAACAGAGCTCTGTTAGCTGTGCTAAGGTGTGGCCACACTGGCTAGCTATATTTTGATAAGGA GCTCGCAAAGATGCGGATTTTCTACGGACTACTGGCGTTCCTGGTGGCCAGACAACACGATGCCC AAGCGATACAGGCACGCAGCGACAAGGAGCAGCCGCAGACTGTGGTCTCCGGCACGGCGGTGCAA TCGGTGGTGCCCGTTCAGGCGCAACTGGGCTCCGGCATGGGACCCTCCTCATCGTCATCTTCGGC ATCTTCCGCCTCGGGCGGAGCTGGAAACTCGGCCTTCTATCCACTGGGACCGAATGTGATGTGCT CGTTTCTGCCGCGCGACTTTCTCGATTGCAAGGATCCCGTCGATC Found at i:13619751 original size:11 final size:11 Alignment explanation
Indices: 13619735--13619762 Score: 35 Period size: 11 Copynumber: 2.5 Consensus size: 11 13619725 GAAGCCAAGG ** 13619735 AAAAAAGTAAA 1 AAAAAAACAAA 13619746 AAAAAAACAAA 1 AAAAAAACAAA * 13619757 AACAAA 1 AAAAAA 13619763 CAGCCAAAAC Statistics Matches: 14, Mismatches: 3, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 11 14 1.00 ACGTcount: A:0.86, C:0.07, G:0.04, T:0.04 Consensus pattern (11 bp): AAAAAAACAAA Left flanking sequence: Indices 13619235 -- 13619734 TGACAGCTGTGCTTTATTTCCTTGAACGTGTTTGAATTTCGAGTGGCCAAAAGACAATTTAGTCG CTAAGTTTTGCTAAAAGTTTAGCTATACAATGTAATTTGCAAGTTTAAGTTGATAATTATGGTTT CGTTCTAAAAACGCAATCAACAACAATTAGTAGAAATCGCGTAAATGATAGCTATCCACAAACAA CAAAATTCTATGGAATCCAGCTAGTTTAGTTGCTCCTATTATCTCTCCTTCTTTCCATCTAACTC CGTATAATTTTACTTTCGCGAACGAGAAAGTGTTAAAGGAAAACAACACGAATAACAAATAAACG AACAATAATGCTAATGAAGCCAAGCGTGAAATGTTTTTTCTCTATATTTTTTTTTTTAATGTTTT GGAATTTTGTGTGTTAAAGTGCAAGCGAAGTAGCAAAGCAGTGGAAAATAAAAGCCATAAAATAT TGCAAAAAGCAGCGGATCGGTGAAAAGCGTTAACCGAAGCCAAGG Right flanking sequence: Indices 13619763 -- 13620262 CAGCCAAAACAACAAACATCAAAAGTTGCCAACTTTTTTCTCTTGCGACCGCAGCATCCGAAGAA GCAGCGGCGTCAGCAGCGACGCCCGACTGCAGCCAGCGTCGCGCTGGCAACAACAAATTGCGGTA AGCATTTTTTGCACACTTTTCCATTGTCTGAAAAAATTAAAAAAAGGGAAGCCCTATACAATTGC ATTCCTTACACAAAGAAGTGATTTGATTTGATTTCAAAACTGGTATTTATTTCTAACCATTCGTA TCATTTTTCCTAAAACAATTTTTATAATTTAAAAAAAAAAAACAAACTTAAAACCTTATACTATT ACATATCAAGATAATTAAAGCACATCACTTTAATGCGCAACTTCCAAGTTCCGATTGAAAAGAAA AATTTGTAATTTCAAAAACTTAAAATTTAAAACTTTGAAGGCAATTCGAAGTAGGATAAACTCAC AAATATTATTTTCTCGGTGTACACACTTGTCTTCCATCTGGCTAC Found at i:13623325 original size:12 final size:12 Alignment explanation
Indices: 13623310--13623341 Score: 43 Period size: 12 Copynumber: 2.8 Consensus size: 12 13623300 GGTATGTAGG 13623310 TATATGTGTGTA 1 TATATGTGTGTA * 13623322 TATATGTATGTA 1 TATATGTGTGTA * 13623334 -GTATGTGT 1 TATATGTGT 13623342 ACGGTGTGTG Statistics Matches: 17, Mismatches: 3, Indels: 1 0.81 0.14 0.05 Matches are distributed among these distances: 11 6 0.35 12 11 0.65 ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50 Consensus pattern (12 bp): TATATGTGTGTA Left flanking sequence: Indices 13622810 -- 13623309 AGGCTGTCGCCATAAGCGAAAGCGTCACTTGTGCCACCTTACCACCCATTCAACCACCCACCTTA GCACCCATCATCATCCACCACGACGGCCATCGGCGAGTTTTAGCGGATTTTGTTTGTGCCGGAAT GAAAATCTTCGTCTTCCTTGTATCACAGTATACCCTCGAATCACTCAAGGTATTGATCATATACT TTCATAGCGAATTTAAAATCTTTAAAATAAGCAAAATACTCTGCCATACTCTGGTAGAGTCACTT TGAGTCACTTTGTAGGGAAAATAACGACTTCTTTCGAACTTGTTTTATTTCCATACCGTACAGTG AACTTAAAAAGTGTAGGAAATGTTCCGCTTCTTTGGAGTGCACTGTATTGTTTATTGTTGCTTTT GCTATTGCTGCTATTGTGTGTGTCATCCACGCATTTTCTCCATGCTCCAGTAAAATTCGAGGAGG GTTGTTGAAGAAACGCCCAAGTGGATGGGTGGGTAGGTATGTAGG Right flanking sequence: Indices 13623342 -- 13623841 ACGGTGTGTGAAGTTTGAAAAACTCACCACCGTCTTTTGCCAAACCGGTCACAGTCGACAGTCTT CCTCTTCTTGTTTCTTACTATCTTTTCACACTCTGGAAAAATAAGTCAGGATTGTAAAGCCGTTT ATGAGTCTGGGCCTAAAAATAATGCCAAAATTCTAACTTATTGTACATAATTCCTTTCAAGGTTC TTAAGTTTTTCAAATATATTTCCGGTATCAGTTATTTTTAAAGCTACACATTGTATTCTTTTTTA TGTATTAAAAGTTTGTCGGTGCTCTTGTTTGTTGTCGCTTCTTTTTTCTGTTTGGCATTTTGTTT GCCACAAACAATTGCATACTTGTGCAGGCTCTAGACATTTGGAGCATTCTTCCTGCATTCGTTGC GATTTTCATACCTGGTAAATTGGTGTTAAGGAAAGGGGTAGATTGTGTGGCTTGGAAAGTTTGTA TAGCAGGAGGAGTAAGAAAGCTTGCAGCAAAATACTGTGTGTAGT Found at i:13624407 original size:18 final size:18 Alignment explanation
Indices: 13624364--13624408 Score: 62 Period size: 18 Copynumber: 2.5 Consensus size: 18 13624354 TGTCAGCCAG * 13624364 AGCCTTCTTGGCTTTCTT 1 AGCCTTCTTGGCCTTCTT * * 13624382 AACTTTCTTGGCCTTCTT 1 AGCCTTCTTGGCCTTCTT * 13624400 CGCCTTCTT 1 AGCCTTCTT 13624409 ATTGAGGAAC Statistics Matches: 21, Mismatches: 6, Indels: 0 0.78 0.22 0.00 Matches are distributed among these distances: 18 21 1.00 ACGTcount: A:0.07, C:0.31, G:0.13, T:0.49 Consensus pattern (18 bp): AGCCTTCTTGGCCTTCTT Left flanking sequence: Indices 13623864 -- 13624363 TTGCCATCTATAACGTTCTTCATTGTTTTGTTTTCTCTTGGTGCAGCCTGCGGAGAAAATGATGC CGCAGTAAGGAAGACAGAAAGATGAAAATTGTGGCACTCAACACGTCGTCTCCTTCAACTCCTCT CACCCATTCCAATTTTCGCATCTCTTTGTCAGGAGTGTCTTATGTTTATACTCGTGAATCTTCAA ATATGTTCTTTAATATATACGACAAAGTCAAGATAGCTATTTTAAAAATATTTTCTTATGGTAAA TATTGCTTATATATATAGTTTTTCACTGTGGATTTTCCTATCCATTTTTCATCTCCAAACAATGA AGCCGGAAAACCAACGTAAAAGGGGCCAAAAAACTTTTTGAAGTAAATTTCAAATAATTTTGGGC GACTAAATAATAAAAGATTTTCATTTGATCTACTTTATTTAAGTATATTTGCAATCTAGTTAACA TTAGATGCTAGAGGCTAGCACTAACTCAAGAAGTCTGTCAGCCAG Right flanking sequence: Indices 13624409 -- 13624908 ATTGAGGAACTTGAGATGGTTCTGAGAGTTGGTGACCGGCACGATGTTCATGAGTTCGTTTAGAC GGGCCCACTTGAAGCGCGGCAGGTACTCCATGATCCACAGTGAGTAATAAAATGGGGACTTCTTG TGCGTGGATATCTGCTTGTAGTTGAGCAGTGGAACGATCTGTTTGGCCACACGTTTCGATTTGAA TTCCACCCAACCCTCGGCGAAGAGGAAATTATGAGGCTTTCCTAAAGTAATTGGGTAATTAGTGG GTCTTATACATGTGTATGCCACTTGGTCCACTCACTTGACAGCTTCTGCGACCGCAGGAAAGCTC TGCCGATGGCACCGTACTCGCCCAAGATTTCACGCAGGCGGGTCAAGGTCATGTGCTTGGGTAGG TTGGATATGTAGATGACACCCTTCTTGCTGGCGGCTTTGAAGGTGGCCAGCTCCATTTCATCGCC GTCATCCGAGGTATGTGCCTCCCCATTCACAGACTCACCTTCATC Found at i:13626852 original size:22 final size:22 Alignment explanation
Indices: 13626827--13626882 Score: 61 Period size: 22 Copynumber: 2.5 Consensus size: 22 13626817 TGCCCGCGAT 13626827 ATATATGTAGACATATATGTAC 1 ATATATGTAGACATATATGTAC ** * * * 13626849 ATATATAAATATATATATGTAG 1 ATATATGTAGACATATATGTAC * 13626871 ATATCTGCTAGA 1 ATATATG-TAGA 13626883 TGTGCGTACA Statistics Matches: 24, Mismatches: 9, Indels: 1 0.71 0.26 0.03 Matches are distributed among these distances: 22 22 0.92 23 2 0.08 ACGTcount: A:0.43, C:0.07, G:0.12, T:0.38 Consensus pattern (22 bp): ATATATGTAGACATATATGTAC Left flanking sequence: Indices 13626327 -- 13626826 TTTGAAGTATATCCTTGACATATGCAGCGCTTCTATTTTATATGTATGTGCCGCCGCGTTAATGC CCGATATATTCGCTATGGCTCATCCTATTCATATCCACAACCGACATCATCGTCTTTATCTCTAT CGTCATTAAACGGGGCTCGTCATTATTGCCATAAAACTTTCATTTTGTTCTTGTTCTTGCTCTTG TTTGGTTCCTGGCGCAACTTTTGCCACTGCCACTGCCGCTTGCCGTTTGGATGTCGTATCTCCAT CTTGGTCTTTCCTATAGTTGCCATCTCTCTCTCTCTCTCTGCCGCTCACGTTCCATCCCTTTCGC ACTGTCTCCGAGTGCTGCTGGCATTGGCCTTTTAGTTCATTTCCGCCCGATACGCTGCCTTGTGA TGACATTGTTTTTATGACGCGACCCCTCCGATTCCTCAGTTTCCCTGCCGCTTTTCCTTTGGCTC CACCGCCGACACATTTTACCTACAGACAAAGGATATGCCCGCGAT Right flanking sequence: Indices 13626883 -- 13627382 TGTGCGTACATATATCGTGCATGAGTTTGTCGGGCCCTGGGCTTTCGCTCGATTCTGATCCAATT GCAACAAATAACACAAAGGCTTTGCGCCAAGTGAAGTGATGGATAATGGTGTTAGTGATGGGCCT GTCAATCAGCCACCGATGTGCCATATTGACAGAGACATAGACATCGGTGTCATAGATCTACGACG TGATTGCCGGTTACACAAGTCCAGAATTTGGGTCACGCAAATATTGCCATCGTTACTAGGAAAAA GTGCAGAAAATTTTTATGCATTCACAGATGTTCTAATTGTACAATATAAAATCAAATTTTGATAT AATCAACGCTCTTAAAAAATTTACTAAACTGGATGTGAAAAAAGTGTTGCGGTAGGTTGTCAATC AGTTTCAAAGCCATTTCATTGAACTGTCAAAAATAACGTGTACGAAAATGATGTGTTAATTTAAA ATCAAATCAGAGATTAATCAGCTGAGAGCATATTGAATGTTAATT Found at i:13626874 original size:12 final size:12 Alignment explanation
Indices: 13626824--13626874 Score: 60 Period size: 12 Copynumber: 4.4 Consensus size: 12 13626814 ATATGCCCGC 13626824 GATATATATGTA 1 GATATATATGTA * 13626836 GACATATATGTA 1 GATATATATGTA * * 13626848 CATATATA--AA 1 GATATATATGTA * 13626858 TATATATATGTA 1 GATATATATGTA 13626870 GATAT 1 GATAT 13626875 CTGCTAGATG Statistics Matches: 30, Mismatches: 7, Indels: 4 0.73 0.17 0.10 Matches are distributed among these distances: 10 8 0.27 12 22 0.73 ACGTcount: A:0.45, C:0.04, G:0.12, T:0.39 Consensus pattern (12 bp): GATATATATGTA Left flanking sequence: Indices 13626324 -- 13626823 CGATTTGAAGTATATCCTTGACATATGCAGCGCTTCTATTTTATATGTATGTGCCGCCGCGTTAA TGCCCGATATATTCGCTATGGCTCATCCTATTCATATCCACAACCGACATCATCGTCTTTATCTC TATCGTCATTAAACGGGGCTCGTCATTATTGCCATAAAACTTTCATTTTGTTCTTGTTCTTGCTC TTGTTTGGTTCCTGGCGCAACTTTTGCCACTGCCACTGCCGCTTGCCGTTTGGATGTCGTATCTC CATCTTGGTCTTTCCTATAGTTGCCATCTCTCTCTCTCTCTCTGCCGCTCACGTTCCATCCCTTT CGCACTGTCTCCGAGTGCTGCTGGCATTGGCCTTTTAGTTCATTTCCGCCCGATACGCTGCCTTG TGATGACATTGTTTTTATGACGCGACCCCTCCGATTCCTCAGTTTCCCTGCCGCTTTTCCTTTGG CTCCACCGCCGACACATTTTACCTACAGACAAAGGATATGCCCGC Right flanking sequence: Indices 13626875 -- 13627374 CTGCTAGATGTGCGTACATATATCGTGCATGAGTTTGTCGGGCCCTGGGCTTTCGCTCGATTCTG ATCCAATTGCAACAAATAACACAAAGGCTTTGCGCCAAGTGAAGTGATGGATAATGGTGTTAGTG ATGGGCCTGTCAATCAGCCACCGATGTGCCATATTGACAGAGACATAGACATCGGTGTCATAGAT CTACGACGTGATTGCCGGTTACACAAGTCCAGAATTTGGGTCACGCAAATATTGCCATCGTTACT AGGAAAAAGTGCAGAAAATTTTTATGCATTCACAGATGTTCTAATTGTACAATATAAAATCAAAT TTTGATATAATCAACGCTCTTAAAAAATTTACTAAACTGGATGTGAAAAAAGTGTTGCGGTAGGT TGTCAATCAGTTTCAAAGCCATTTCATTGAACTGTCAAAAATAACGTGTACGAAAATGATGTGTT AATTTAAAATCAAATCAGAGATTAATCAGCTGAGAGCATATTGAA Found at i:13627829 original size:11 final size:11 Alignment explanation
Indices: 13627813--13627852 Score: 66 Period size: 11 Copynumber: 3.6 Consensus size: 11 13627803 GCCACCCAAA 13627813 CCACCCATGAC 1 CCACCCATGAC * 13627824 CCACCCATGAG 1 CCACCCATGAC * 13627835 CCACCCACGAC 1 CCACCCATGAC 13627846 CCACCCA 1 CCACCCA 13627853 CTCCCTCGTT Statistics Matches: 26, Mismatches: 3, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 11 26 1.00 ACGTcount: A:0.28, C:0.57, G:0.10, T:0.05 Consensus pattern (11 bp): CCACCCATGAC Left flanking sequence: Indices 13627313 -- 13627812 TACGAAAATGATGTGTTAATTTAAAATCAAATCAGAGATTAATCAGCTGAGAGCATATTGAATGT TAATTTGTTTTTGGAAGAGATAACGATGCGAGACAAAAATAGAATATTTCGTAATGAATCATCGC TTAGTTAGTTGATAATATAAAAATATACATTAAAATGTGAAGCAAATAAATATGTTTTTAAAAAA ATGCAATCTTTGATCTTACTGGCCAGCATAATTTCACACAGATTCATGAATATAATGAGATATGC AGTTTATAGTGATTCAATTCGTTGGCCACTAAACTGGCGACGGTGAGTGTGCCAAGAAACAAACG CTCTGTCAGGAAAAAAGGCAGGAATCCCATTTCGAGGGGCTGGGCGCAACATTAGCGGCTCGTTG GCGAAAATGCTGCCAAGCCAAACCCCCTCATTAGATCCCCAACATGCCGAGTTCCTACGTGTGTT TACCTTTCTCAAAGCGCTGGCTCGCTTTTCTCCATGCCACCCAAA Right flanking sequence: Indices 13627853 -- 13628352 CTCCCTCGTTGTCCTTCCGCCCAGTCGACCTGGTCGACACCCTTGACAAGTATAACCAAAATTGT TTCACCAAAATACGCAACTTTAATAGCGGCCAAATTATGGCGTAAAATGTTTGTATCTTAATTGC TATATATTTTGATGAATTTCAAGCTGATATGTTTTATATTTATACATATAAAAAAACAGTAAATT TAAAAAATCAATCTTAGTATTATTTTCTCGAAGTGCATGTCCCTTTGTTAATTTGGTTTTTTTTT TTTTTTTTTTTTTGGGTCCTATTTTTTTTTAATTGCTTGAAAGAGAGGGAGTGCGTCACGCGAAT GCTGAAACTATATAATATGGCAGAAAAGGAAGTGGAAACCGCAATCAGAGTGTGCGGTCTGGTTT TATAAAGTTATTCATAAACGTCGACGAGGGGAAAAGAGGCGCTGAATAGATGGTAGGTAGATGGT AAAGAGTAAAATGCAAAATGGACGGAAGCGGGTGCAGTGCAATTA Found at i:13631700 original size:11 final size:11 Alignment explanation
Indices: 13631686--13631708 Score: 46 Period size: 11 Copynumber: 2.1 Consensus size: 11 13631676 AATATATTTT 13631686 ATAAAATAAAA 1 ATAAAATAAAA 13631697 ATAAAATAAAA 1 ATAAAATAAAA 13631708 A 1 A 13631709 ATTCATCTGC Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 11 12 1.00 ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17 Consensus pattern (11 bp): ATAAAATAAAA Left flanking sequence: Indices 13631186 -- 13631685 ATGACCTGATCGAAGCCCACAAAGCCACCATTAGTTTGGTGTTTCTGGCCGAGATTTTTGGATAC AACGACACGTCGCTCGTCCATGATGAACTCGCCGTTGCCCACCACATCCGAGACTCTGCCAATCG TGCAACCAAAATGATAATTTCTATATTTCGTATACCCGGCAACATCATCGAATCCGAGGACCACA TCGGACAACTGGTGATAGGCATCTGGCACTTGAATGCTCTGGATTGTTGCGCCCAGCTGGATGAT GGCCACGGACAGGCGATTGGTGTTGGTCATCGTGTAGCGACGAATCACTTGGGCCTGTTTGGTAA ACGGATTGGTCGCAATACCAAAGATGTCCTCCACAACCTTAACCATAATTAGGGATAAACCTTTT TTGAATTTTGAATTTACTTTAAATTTTCCTTCTGTGTGAATTTCTTTTTGAAAGTTTACTCAAAG TTGTTGAACAAAAAAGTGGGTAGATACATATAAAAAATATATTTT Right flanking sequence: Indices 13631709 -- 13632208 ATTCATCTGCCGATAAATCCGACTAGAGAGAGACTAGTGTGTGTTTCAAATGCACTTTAATCACG GAAACCAGCAGATTGCTAACAGTTCTCAGCCATGTCAATTTCAATTATTTCCTTACACAAGCTGG CATTTCAGTCTTAGATTGAACTGAATTGCAATTAATCTGTCATAAAGTGTAAAAGTTACCAACGT TTTCTAACTTGGAAGTGCACAGCGATGGGAACTTAATTTTAAGAGGCAATGCTGACAATTTAACT TCATTTCAAACGATTTGATGATTTAATTTGATGTGTGATGTGTATAAAGCTAACATTTTTATATC GAATTCTTTCCTTTACACTTTCAAGTAGATTCCAATAAAAGAACTATGATTTTGCGACCTTAGTC ATCATCAGTTCAAGCGAGTTGTCACACTTGTGATTCCACAAATGCAACTTGAAGTTAACTGCAAT ACACACACTCTTAGTAAATTGACTTAATGGCTTATCATAAATCCA Found at i:13632773 original size:12 final size:12 Alignment explanation
Indices: 13632753--13632779 Score: 40 Period size: 12 Copynumber: 2.2 Consensus size: 12 13632743 TCGGAAAAGC * * 13632753 AATGCAAATTGG 1 AATGAAAATAGG 13632765 AATGAAAATAGG 1 AATGAAAATAGG 13632777 AAT 1 AAT 13632780 AAATGTGTTT Statistics Matches: 13, Mismatches: 2, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 12 13 1.00 ACGTcount: A:0.52, C:0.04, G:0.22, T:0.22 Consensus pattern (12 bp): AATGAAAATAGG Left flanking sequence: Indices 13632253 -- 13632752 CTCAACTTCAGTTTCGCGATGCGATGGCGGTAATATCGGGGCAATTTGTTGATTCGAGGGCATGC CACCTGTTCGTACATCGCACTCTTGCCGAGGCATAGATAAATTTCTTGCATCGCGACTATCTTAT CGTGCGTTGCCTGTTGGCAGTACCCAGAACGCAGGTCATCACATCCGCGATTCATTCGGTAAAAG ATCGATAGAGGTGTGTGATTTACTATAGGACCACGGTGTACAACTATCACACAGGGAACGTAATC GAAAAATTGGTACGAAATGTGCTAGCTACGGATGATTATTCAGCCAATAACAGTGACAGGAATTA TCATCATTTATAATGGCAATAACTGAATAATTGAATATGCTGCGATATATGACGGAGACAGAACA AAATAATGATTGCCATCAATTACTTTGCCCTTGCCCCATTACGGCTTCTTCGACAGCTGCGTGGT TTTTCACACTACACTCGCACAAATCGTGTGTAGTCTCGGAAAAGC Right flanking sequence: Indices 13632780 -- 13633279 AAATGTGTTTGGGCTTCAAACATAAACATATCTCTTCGATGAACCCTTTAACACCTTGATAACAT GAAGTGTAGTTTAGAGAACAGAAATCCTTAGAAAAGAACCATTTTTTTTTGCAAGTGTACATAGA GAAAACAGTGGGGTGCATTCATACCTGCAGTTGTTGTAATGGGTTTTCGAGTTGCCTGCGAGGAA GCCTCCGCATTGTTCTTTCTGTCCGTGCCGCTGGTTCCATATCATGCCTCATTGGCGCCACCCCA CAGAAAATATAAGGATGGTGTGCAAATAAATGCAAAATCATCGCTCGTCATTCACATCGACACCG CATCGTCGTCACAGTCACAGAGTCAGTCATCCTCGTCCATTGTCGCTTAAAGTTCAGTTCAGTGA GGCCAATGGCAATGGTAATGCCAATGTCAAAGTTACTGGGCCTTTAGATTGCAGCTTTGGTTGCT TCACCTTTGATATTTGGCCTGGTCTGCCACCGGATTCGCTGGCGA Found at i:13635789 original size:12 final size:12 Alignment explanation
Indices: 13635759--13635794 Score: 44 Period size: 12 Copynumber: 3.0 Consensus size: 12 13635749 TTGTTCATAA * * * 13635759 TTCTATTTCGTG 1 TTCTTTTTCTTC * 13635771 TTTTTTTTCTTC 1 TTCTTTTTCTTC 13635783 TTCTTTTTCTTC 1 TTCTTTTTCTTC 13635795 AACAACAAAA Statistics Matches: 19, Mismatches: 5, Indels: 0 0.79 0.21 0.00 Matches are distributed among these distances: 12 19 1.00 ACGTcount: A:0.03, C:0.19, G:0.06, T:0.72 Consensus pattern (12 bp): TTCTTTTTCTTC Left flanking sequence: Indices 13635259 -- 13635758 GCGGTGCAATTTTTGAACAGCTGCGACCAAAGTAAATAAGTAAATAAATAAATAAGTTCATAAAA TAATCATGATTGCTTTTGGTGTCAGGATCTTTCCCGGATCATATCGTATGCACTGCGTATGAGTG ATATAGTTTAAGATTATCACTCATACGCAGTGTTGCACCTCGTTGAAGTGCATAATAATCACATT TCTGTGGGTTATGAAATTAGGTTTCTTTTTTTTTGTTGCGAACCTAATCTACTACTGATTATTTA TCAATAATTTATTTATAAATCTTGTACTTTTTGGTTATTTAGATTTGTACATGCTCTTTAGTTTA AAACTAATTACTCTCGCTTCTTTCGATTTCAGATGCCTGGACTTGTGGTCTTCAGACGTCGCTGG TCTGTGGGCTCTGATGATCTCGTGGTGCCGGGCGCATTTCTCCTGACGATTCATTTTATATGGTA AGTAGCCACGTACCATTTTACTTAGTCATCGATTATTGTTCATAA Right flanking sequence: Indices 13635795 -- 13636294 AACAACAAAATAAAAACAAAAAAACGATGTGATTTCTATGACAGTTTTGTGATTGTTAGCGTCTC GTTGGTTATCTTTGAGTATAATACACGAATTTTAAGCGTAAAATTATTGTTCTATCATCTAATAG GCTACTTGTTGATACTATTTTGTAAGTATACTGAATCACTTTCTGTGGATTCTGTATTGATATTG ATCCTATTTTGCAGTTTCAATATGTGTAGAAATAGGTATATGTGTGATCTCGATGCGTGGCAGTA TTCTGGATGCCGAGGCGCGCACCTCAATCAACATTTGGATATATCTCAAGAGCTGTAAGTTAGCA CTAATAGAATAATCCTATATGTATGTAGTATACACATTCTTATCTTCATTGCAGTGGTTATCCTG TTCGATATTGCCTGGCTGGCGGTGGGATCCGTTTGGCTGGGGCATTACTACACCACTGCACCGAT CGATGATCCCAAAAAGGTCTACATAGGTGAGTCAAATCGTAGATT Found at i:13639003 original size:11 final size:11 Alignment explanation
Indices: 13638987--13639009 Score: 39 Period size: 11 Copynumber: 2.1 Consensus size: 11 13638977 CGCAGACAGG * 13638987 AAAAGTATTAT 1 AAAAGTATGAT 13638998 AAAAGTATGAT 1 AAAAGTATGAT 13639009 A 1 A 13639010 GCGAAATTAT Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 11 11 1.00 ACGTcount: A:0.57, C:0.00, G:0.13, T:0.30 Consensus pattern (11 bp): AAAAGTATGAT Left flanking sequence: Indices 13638487 -- 13638986 TGTTTGATTCGCGATACGAGATGCGCCTCTGGTCCAAGGTCTGTGCTAATTGATGTGCGATAGCC AACAATGCTTATCGACGAAGTGAGAGTGATGGAGTGAAATGTCAAGCTGATCCGCAACTGACTCA TTCGCAATGACGTCAGAGTTGTGTTGTCGTCGCTTGGCAATGTCTTGTGTGTTAATCTATCGCCT TGCCCATCCGTGGAGATACAGCTGATGATCTCGTCATCGGGAACGGGCACTGAACTCTCTATTCA GTTCGCGCCCTTTGCTATTCGGTGGCTGACTCTAATATTCGCCTACGATTTGACATACCCACGTG ACTTATGGCCGAAACGTGCTGCTTCAATTATTATGTTCACAAGTGGAGATTTGGGGATTTCGTTG GCCGTAACGCGGATTACTAACAGAATGTAGGGCCATATTGAATTTCCAAACGCAGACATGCTTTA ATAAATATATTAGTTAAATGAGAAAGCCCATAACTCGCAGACAGG Right flanking sequence: Indices 13639010 -- 13639509 GCGAAATTATAACGTTTTTCTTAGACTAAATAATCGAACAAGACTATAAGATATTTTACTTTAAT ATATCTTTCAATGCATTGAGATTTAGTACAAAAAAAAAAAACTCGGAAGATCTAGGTATTTATAT ATGCTGGGTGATAGTTAACGATGTTGTATGTACACATGTATGTATGTATGAATGGTACCCTGCTG TCGGCGGAGTTCTCGATCATCGACTACTTTCACTTGTTATCGTTTCAATTGGTTTGGTTCGGTTT TGTCTTGTTTCATTATGTTTTGTGTTGCTGAACGTGTTTGATCGATTTCTGTTTGCCCCACCCCA TCCCGAAATCCAGTCAATGAGAATAGAAAATAATGTTACCAAAATGTTTTTCAGGCAAAAATACG ACAGTGGTTGGAGGTAGGCACACACACAGACCCACCAGCCCATCAACACTCAAAACTACACCCAC ATCGAAACACATTTACACACGCACACACCTACAAAGCGCATCGCG Found at i:13642402 original size:12 final size:12 Alignment explanation
Indices: 13642370--13642414 Score: 42 Period size: 12 Copynumber: 3.5 Consensus size: 12 13642360 TGATAACACG * 13642370 ACAATAACTACA 1 ACAACAACTACA * 13642382 ACTACAACAGTTACA 1 ACAACAAC---TACA * 13642397 ACAACAACTACG 1 ACAACAACTACA 13642409 ACAACA 1 ACAACA 13642415 CAAAATACAG Statistics Matches: 26, Mismatches: 4, Indels: 6 0.72 0.11 0.17 Matches are distributed among these distances: 12 15 0.58 15 11 0.42 ACGTcount: A:0.53, C:0.29, G:0.04, T:0.13 Consensus pattern (12 bp): ACAACAACTACA Left flanking sequence: Indices 13641870 -- 13642369 CTACAAATACACAACATAACCTATCATACTATATACCATACACAACTCCTTTAAAAATATCTGCT GCATGGGAATGGTTGTTGTAAAGCTTAAGGAATGGCAAAACAAATACATATAGTATGGTAGATGA AACGTATTGCCTATTTTGCGCTGAGCTGGGAGGAGACCCGATCCCGTATGTCTGCTAGTTGCAAT GAGAGAGTAGTGGATCAGGCTATAGGATAATCCCTTGAGCGATTTTTCCACCCCGACCCCATCCT TGATGATCTGATTCAGATCACAGTTAGTATATGCGACGAACTTTTGTAAACCACTGATGTATTTA ATTATGCTTTTGTTTTGCTTCTTTTATGGAACTTAACGATTATCGATAACTGATAAACGAATACC GATTTAACCGATTTGTATGTGACCCGATCATCCGATGATGTGCACAGGTCGTGTCTTGTAGAGAT CGAACCGTAAAGGCATGTACCACTCGTAGACGTAATGATAACACG Right flanking sequence: Indices 13642415 -- 13642914 CAAAATACAGATACCAGGTACAGCCGCCCGCCTTCTATATAAATTTGTTATCATTAAACAAAAGA CTAAACCAACTTTCCATTTTGCTCTCGTTAAAACCAAACAAAATTTTTAAATATGTCAACCGAAT TACAAGTCTCTCTCTCTATCTCTCTCTATGTATATTTCTCTCTCCCGCTCTCAACCTAACCTCAA ACAATAAAAAAAAAAACCAACAACCTATCCAATTTTGTAAACTAAACTCTCTAAATGTAATCGTA CTCGCTGTGTATGTACAACGAAAACCAATATCGATATTGTGTCTCGCACCCGTAAGCTCCCACCC ACCCTCAAACCACACCTCACCACAGCGAACTATCGAACCATTAGCAATTCTACCCACATCCTACT CGCTTAACTTTGACGTAACTGTACTTAGTCACTCCACTTCACTCGCTAACTGCATCTGCTACTGT CTCTTTCCACTCTCGCTCATCTGTGAAACTGTACATACATGCATC Found at i:13653984 original size:11 final size:12 Alignment explanation
Indices: 13653957--13653985 Score: 37 Period size: 12 Copynumber: 2.5 Consensus size: 12 13653947 TTTAACTGGC * 13653957 CAAAAATTCAGG 1 CAAAAATTCAGA 13653969 CAAAAATT-AGA 1 CAAAAATTCAGA * 13653980 GAAAAA 1 CAAAAA 13653986 AAAAAAAGAA Statistics Matches: 15, Mismatches: 2, Indels: 1 0.83 0.11 0.06 Matches are distributed among these distances: 11 7 0.47 12 8 0.53 ACGTcount: A:0.62, C:0.10, G:0.14, T:0.14 Consensus pattern (12 bp): CAAAAATTCAGA Left flanking sequence: Indices 13653457 -- 13653956 TTTGGCTTTGGCTTTGGGTTTTTGCTTGTTTTCCAAGCCGAAACCGAAACTGAAACCAACACCAA AACCAAAAACCAAAAACCGAACTTGGAGCCGCAGCCAAAGCCAAAGCCAAGCCAAGTCAAGGAGG CGGAAAAGCGCGCACGAGAAAAACCTGTTTAGCGTTCAATGATTGTTTTGTTTTGCAGCAAACGA AGAAACAAGAAAACACATTTGTATTTGTTTGTTGCCTGCACGCGCGGAACAGAGAGGCATGCCAC GATCCCCAGCTTACATACATATATAGCTGGATCCACTGCCACACTCGCTCTTCTTGAACCCCACA AACTGAACAATACCAACAACACAGCTTTCCTCGGCGGCGGCAAATTGAACTTTCACTTTTTCGCT GGGAAATTGCTATGGAAATGGAAACGTTGGGCCTTACATGGAGTGCGTTGTTATGTCAAAGATGC TTCTGTCACTCTTCTGCTGCAGTTTAACTATTGCTTTTAACTGGC Right flanking sequence: Indices 13653986 -- 13654485 AAAAAAAGAAATGAAAGGAAACAGGTGCTCCCAAGCACTTTCTCCCACGAAAACAGGAAAAGGGA GCGGGCCATGGATCATTGGGTTTAAGGGGGAAATGGGGGATGGGTTTCGAAAGTGTTAGGACCAA AAACTTACGATCATACGATATGAATAGAATATAGCTACTAATTTCAGCCATTACATATCGTATTG CTGTTTAATTTGGAAACAAAACTGGTTACGAAACCCTATTCGAAGTACACGATTGCTCATGTCAG TTGTTTAGCGTCGAGTGGGGTTTTTTTTTTCTTTTTCTTTCGGGAATCGAATGGTATAACACATG GTATATTGTACTGTTTGGGTTTAGGCAATGCAAAGGTGAGGGAAATTACTCATGGGCAGACGACT CGAGGTGCGGTCTCCATTTGCGTGGGCTGGATGAGTGGCCAAGTTGAGTCGAGTCGAGTTTGCCA ATAGAATCAACAACAGCAGGGCTCCAAAGTGTTCCGAAAACAATT Found at i:13655451 original size:12 final size:12 Alignment explanation
Indices: 13655446--13655484 Score: 71 Period size: 12 Copynumber: 3.2 Consensus size: 12 13655436 GTGTGCGTGC 13655446 GTGTGTGTGTAT 1 GTGTGTGTGTAT 13655458 GTGTGTGTGTAT 1 GTGTGTGTGTAT * 13655470 GTGTGTGTGAAT 1 GTGTGTGTGTAT 13655482 GTG 1 GTG 13655485 CGATAGGGAG Statistics Matches: 26, Mismatches: 1, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 12 26 1.00 ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46 Consensus pattern (12 bp): GTGTGTGTGTAT Left flanking sequence: Indices 13654946 -- 13655445 CTTTGGAGGAGCATGACGTATGTGTCAAGAAATTTAGAAATCACTAAAAGATAAAAAAGAACCTC TAATTCACACACACACACACAGAGAGAAACATGCTGATGGTTGCGAAGGGGGGCGATGCGGGGGG CTTAGGAGAACTATGATGAAGGAGCATTTGTTGAGCAATTGGCGCAATGAAATGTGATTAAATTT TTTAGCAGATAAGAACCGAAGTAATATGTTACGTTCCACAAATTTCAGACTGTGCGCACACAGCA ATATCATGATTAATTGTTAATTATAAAATATTAAAAAGATATTTCATATGAACAGCTTGGTATGC TCGGATAATTTGGAAAAAGGGCGGCTTTAGAGTATTGCACCAAAAAGGTATGCTGTAATATTTAA TTTGGATGCTTTATAATGGTAATCATGGAGTTCTGAAAATCATAACTCAATCAACAATTTCGTTC TGTGCAGATGTGCCCGAATGCATGTGTATGCGATAGTGTGCGTGC Right flanking sequence: Indices 13655485 -- 13655984 CGATAGGGAGAAAAGGAGAAAACCGGTTTTGGCGATGCTTAGGAACCGCAAGGCGAAAGGGGAAC GTCGGCGAGAGGGGAGGGGGCGGTGTGTGCTAAACGTATTCTGTTCGTTTTAACCAAATGTGACA CACTGCAAAGTGCCACAGTGAGAAGAAGAAGAAGAAGACAACGAAGAACGAACAGGGGTAAGAAG CCGAAAAGAGGGAGGAGGAGGAGAAACAAACGGCAGTTCGCGTTTTCCCAGTCGCTTCTTGTTTT TGCCTTTGTTTGCATTTGCTTCTGCTTTTGCCCCGGCTGCATTTTCACTCTGCACGGAAATTTGC GCAGAGCGAAATGGAAAACTGCAGGGGTATGCAAATGTCGCTGTTCGCTCACCTTTATGATCAAT TCTATCTCGGGCACATCGAATTTACTGCTGCCGTTCGTCTCCTGGCTCTGCTGCGATTCAACTTC CGACATTGCGATATTGTTATTATTTTTATCGTTTATTCTCGATAT Found at i:13664782 original size:13 final size:12 Alignment explanation
Indices: 13664764--13664791 Score: 40 Period size: 13 Copynumber: 2.2 Consensus size: 12 13664754 TTTAAATTAT 13664764 GTATATAACTAGC 1 GTATATAACT-GC * 13664777 GTATATATCTGC 1 GTATATAACTGC 13664789 GTA 1 GTA 13664792 ATTTGCATTA Statistics Matches: 14, Mismatches: 1, Indels: 1 0.88 0.06 0.06 Matches are distributed among these distances: 12 5 0.36 13 9 0.64 ACGTcount: A:0.32, C:0.14, G:0.18, T:0.36 Consensus pattern (12 bp): GTATATAACTGC Left flanking sequence: Indices 13664264 -- 13664763 TACTGTCCGGCAGGCAGGCGAATATACCACAAAATATACTGCAGCTCAAAAGGGCCACTCTAAAA TATCAAATACATATTGCATTGCATTACATTGTTTTTTTTTTTTTAATCTAGCAACGTTATTATTT AAAATTGTAAATTTAATTACAATTCCACTTAGTTATTTTTTTAGCTTGCAATAATTTTAATCCAT TTAAAGTCGGGATTTTGAAATATTTGAGGTCTAAATTTCAAACATTGAAATTTTAATATTACTCT TCTTGAGTTTTTAACTTATATCCACTATTTTTACTTTTGAACCCAAAAGGTTAGCCAAAACTACA ATTTTAGATCCCATAGCTCGAAATATATTATTATTTATATTTATATATTATTTACCTTATGATTA TTTTTAAATAAAAGTTGAATGAATGGAAGTTTCGTGTACAAGTTTTGTATATTTAAAGGTTTTGG TCTGCCGCGTTTACATTTTGGTTAGTACAGAAACATTTAAATTAT Right flanking sequence: Indices 13664792 -- 13665291 ATTTGCATTAAGTTAGCATAGGAAGCCACAACAACGCGATGGAGCAGATGTACCGCATGGACCAG ACTATGTGGCGTTCATGTCTGCAATGGAGCACGTCTGGTTCACCTTGAAGATGTTGGACAGCTCG TCCAGCAGTGTCTCATAGCGATAGGCCACACGGATCTCTGGCACATTGGTGCGCGTGATGTCGTT GCCCATGATACCGTCCTCGTAATAGATGGGTCCCAGCCACTGCTGTTTGATCTGTGGATGAAATC GGAATTGGAATCATTTGTCCGAACATAAAGCAGAAAGCATGCTTGGAACTCACGGCATGTGGGAA TCCGCTCATCATCACACTGTTCCTGGCCAGCTCGCACATGTCGCATGAGCTGAGCTTCCACACCT GTGCCGCAATGCTGTACTCCTCCATGAGGGGTTCCTGAAAAGCGGACATGGGTTAATTTAATGCT GAATATTAAAGCATATATTGTCTAGCCCACCTTGGTGAAGTGGAA Found at i:13673877 original size:11 final size:11 Alignment explanation
Indices: 13673848--13673878 Score: 41 Period size: 11 Copynumber: 2.8 Consensus size: 11 13673838 ATCTTGAGTG * * 13673848 TTTGTGTTTTT 1 TTTGTTTTTGT * 13673859 TTTATTTTTGT 1 TTTGTTTTTGT 13673870 TTTGTTTTT 1 TTTGTTTTT 13673879 TATGTAATTC Statistics Matches: 16, Mismatches: 4, Indels: 0 0.80 0.20 0.00 Matches are distributed among these distances: 11 16 1.00 ACGTcount: A:0.03, C:0.00, G:0.13, T:0.84 Consensus pattern (11 bp): TTTGTTTTTGT Left flanking sequence: Indices 13673348 -- 13673847 AAGGCCATACGTTTTGCTACCAACTGGACTGCTGTGTTTTCGCGCAGTGCACGAGGTCAGTGGGT GGCGGTTGGGTGGTTCGTGTGGCTCGTGTGGCTTGTGTCGTCGCGATGCATTCACTTACATGGGC AGCGGCTGGGGAACTGGCGACTTACATGTCGCCCTTAGGGAACTCGGCTTTTGGGGCATGGACAT GGAGGTGCAGGCGTTGAGGGACTTGCCGCTGGCCTTGCTGCCCAGCGGACCGGCCGCATTGGTGG CCGCATGGGACATCATCGATCCGTCAAAGGAGTCCACATCCTGGACGCGCAGCTCGACGGGCGAA CCGTCCGAGGTGCTCAGCATTCCGCGGTACGACATCTCGGCAATTGAGATCCTGGATCCTGGGAT CCTGAACGGTCTATATTGGCTAACGGCTAATCCAAATGAGTGTTTCGTGTTGATTTGTTTCGATT TTTCTCCGATGTTTACTGATTTGTGTGTTGTGAAAATCTTGAGTG Right flanking sequence: Indices 13673879 -- 13674378 TATGTAATTCCCCCGGTGACAGGTGTCGCCGCTCTGCTCGATATTCTGCTCTGGGGCAATGTCTT TGGGCAACTGTCGGTTCGGATCGGTGGAATATATATACCGCCCGCGATCGACTGCACTTAATTTA GTTTGAATTCCGTTCGACGCAATTCGCGCATCTCCTACGCGTCTGTCTTTCGCTTTTTTCTTTGT CTACGCCTCAGTATTTTCCTCTGCTTTCTCTCCTCTCTCACTCTTTATATAGTTTCACACCTCTC CCGATCCCAGCGGATCCAAAGTTTATATATCGGGTAAAGTTGGTAGGGAGCTTTCTAGTCACTAG CAAACACGGCTGCGGCACAAAGCTCGGAAAGCCCACAATGTTTGCTAATTATAAACAATATTTTG GATAAACAAACTGCATATAGCCACGCCGAATGGGTGGAACGCCAAAGGGGGTTTTCAAGATCAAA GCTCTTCGAACCCAGTAAAAAAAATAGATATATACATATGTACAA Found at i:13675382 original size:12 final size:12 Alignment explanation
Indices: 13675355--13675382 Score: 42 Period size: 12 Copynumber: 2.3 Consensus size: 12 13675345 GAGCCAAAAT * 13675355 TGGAATTGGAAT 1 TGGAATTGGAAA * 13675367 TGGAATTGGCAA 1 TGGAATTGGAAA 13675379 TGGA 1 TGGA 13675383 GTATCGGTAT Statistics Matches: 14, Mismatches: 2, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 12 14 1.00 ACGTcount: A:0.32, C:0.04, G:0.36, T:0.29 Consensus pattern (12 bp): TGGAATTGGAAA Left flanking sequence: Indices 13674855 -- 13675354 CCATTTTTGTAACCCAAAATTTGCGAAAATGGCAACAATTTAGAATTTTTATATTGAAATACTAA ATGAAAAACTACTTTTCAAACTCAGCGAGGTACGATACATCATTTTAGGTAAATTTGTATAAATA ATTTGGCCAAAAGGCGGACCTTATTGGTCAAAAATGCATTATACTGTGCCACTCTTTAAATTGAT TATGGAATTGGTTATTTCTCAACTTGAAACCACCTATATGCTCATTTATCATTGTCAAATACATA ATTTCTGCATAATACTTGTAGACCACCAAATTAATGATCCATTTTGGCGATGTTTCGATCGAATC GATCGACAAGTGATAAGTACGATAAGGCTGCCTCCTTGACACACCACTTCAAATTCGTAGTTTGC TATTCCGTATTCTAGTCTGGTAACTTTCCTCTATTAGGAGGGCTCGGCTCGATTTGTTTAACGCC CTGTCAGAAGTGGCTTATCAATAGCCCCCAGATGGGAGCCAAAAT Right flanking sequence: Indices 13675383 -- 13675882 GTATCGGTATCGGTGGTTAGCGGTGGGTTGTTAATAACCCATGTGAAGTTTTTTCAGCTTTTTTT CTTTTTTCTTTGATAGCTTCATAGGCCAATTGGTTTGTTCAACCTGGTGGTATTGTGCGCTTTTC GCCATGTCTGCAAGTCATTGTCAGTTCATTTGCCTTATTTGCCGAGTGTGCGATATGCAAACATT CATACATATACTATGCAAATATATATGTTTATGTATATATAGATATATATATTCATATGTATATA TTGAAAGATGGGCATTCTTATAGACGTGCATATATGCGTTTGTTTATCTGTTGTACGTTTCAATT TATTATTCGATTGTGCTTAAGCTCATTTCATTTTATCTCGTTATATTTTTGGCAACGCTCTTTGT TTTGTGTTTATTGACCGAATTGCGAACTTATTAATTGCTGCGTTCGGGATTTTCGTGTTTTTTTT TAAATTTTTCTTGGGCAAAGTGCCCGCTGAGATGGCCACTATTGA Found at i:13675975 original size:12 final size:12 Alignment explanation
Indices: 13675960--13675983 Score: 34 Period size: 12 Copynumber: 2.0 Consensus size: 12 13675950 TTAGCCGCGG * 13675960 CTTTACTTTCGA 1 CTTTACGTTCGA * 13675972 CTTTCCGTTCGA 1 CTTTACGTTCGA 13675984 TTCGACTTCG Statistics Matches: 10, Mismatches: 2, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 12 10 1.00 ACGTcount: A:0.12, C:0.29, G:0.12, T:0.46 Consensus pattern (12 bp): CTTTACGTTCGA Left flanking sequence: Indices 13675460 -- 13675959 ATAGCTTCATAGGCCAATTGGTTTGTTCAACCTGGTGGTATTGTGCGCTTTTCGCCATGTCTGCA AGTCATTGTCAGTTCATTTGCCTTATTTGCCGAGTGTGCGATATGCAAACATTCATACATATACT ATGCAAATATATATGTTTATGTATATATAGATATATATATTCATATGTATATATTGAAAGATGGG CATTCTTATAGACGTGCATATATGCGTTTGTTTATCTGTTGTACGTTTCAATTTATTATTCGATT GTGCTTAAGCTCATTTCATTTTATCTCGTTATATTTTTGGCAACGCTCTTTGTTTTGTGTTTATT GACCGAATTGCGAACTTATTAATTGCTGCGTTCGGGATTTTCGTGTTTTTTTTTAAATTTTTCTT GGGCAAAGTGCCCGCTGAGATGGCCACTATTGATTTTCACATGAAAATATGGCCGTGACTTGCGT AATGGCAGCCAGGAAAAGTCGGCAAAAGAACGACTTTAGCCGCGG Right flanking sequence: Indices 13675984 -- 13676483 TTCGACTTCGCGCCGACAACTGATTCTGATTTTCCACTCAGTTTTGGTCGGTTTGATTGGAAAAT CTGCCACACGTATATGTTATAATAAACAGTTTTATTTGGCATGACTATCTGCATTTAGTCTTGAT TTCCGCCGTCGGAAAAGTAAGAGAAAAGCCAGTCGGAAAAGAGAAGGCTGAGCGTAAGAAAAGCC AAGAGAGTCGGCATTTGTTTTGTCACAAATAAATCATTTAGGGGCTTAGAACGATACAGGTACAT ATGTACATATACATATATATGATTGTATCCAAAGGGGTGGGAAATGCAGTATTGTTTTCTATTTG CCGCTCGCCTTTTTTGTTATTATTATTATTTGTTTCTAATTGGAAAACCCTGACCCTGGCCTACG ATGGACAGAAGCCAGCTGCCGTGGGCACAGTGCTGGCTAACAATATACAACCAGGTGATCTTGAT TTGAAACAAAGGATAAGTTAAATTATTAATAATATGTTTATTGAA Found at i:13676687 original size:19 final size:18 Alignment explanation
Indices: 13676654--13676691 Score: 46 Period size: 19 Copynumber: 2.1 Consensus size: 18 13676644 AGTGGATGAT * * 13676654 GATATAAGTATTAGAATGG 1 GATATAAGCACTAG-ATGG * 13676673 GATATGAGCACTAGATGG 1 GATATAAGCACTAGATGG 13676691 G 1 G 13676692 CAGATAGTAG Statistics Matches: 16, Mismatches: 3, Indels: 1 0.80 0.15 0.05 Matches are distributed among these distances: 18 5 0.31 19 11 0.69 ACGTcount: A:0.37, C:0.05, G:0.32, T:0.26 Consensus pattern (18 bp): GATATAAGCACTAGATGG Left flanking sequence: Indices 13676154 -- 13676653 GAGAAGGCTGAGCGTAAGAAAAGCCAAGAGAGTCGGCATTTGTTTTGTCACAAATAAATCATTTA GGGGCTTAGAACGATACAGGTACATATGTACATATACATATATATGATTGTATCCAAAGGGGTGG GAAATGCAGTATTGTTTTCTATTTGCCGCTCGCCTTTTTTGTTATTATTATTATTTGTTTCTAAT TGGAAAACCCTGACCCTGGCCTACGATGGACAGAAGCCAGCTGCCGTGGGCACAGTGCTGGCTAA CAATATACAACCAGGTGATCTTGATTTGAAACAAAGGATAAGTTAAATTATTAATAATATGTTTA TTGAATGTGCTTTCTTGTTGTTAAAATCACATTTTAGAGCCCCACTAAGGTACATTGTAGCTTAA GTTGTAATTATGTGAATGGATCGAGACTTTTGCCATTCGGTTCCTTAGTTTTCCGCGTTGATTGA ACATAACACAGTACACACAATGACTGCCCTAATTGAGTGGATGAT Right flanking sequence: Indices 13676692 -- 13677191 CAGATAGTAGATAATAAACCCGGTACCGATTCCCACGAATTATGAACGCGCACGTTCTTATGTAC ATACATATGTACATATGTATGTATATGCATACATCTGTGTGTTTGAATGCGAATAGCACTCAAAT TTTGGTTGTTGTTATTCACCAAGTGTATTTATATAGACCGATAAGAGAAGTAATTCCGCGTACAA TTTTATTTCATATTTCTATCACTATCGTATATCAATGATTCAATGGAATACAAAATTGGGTCGCT GCGATTTGATATGTGAGTAGTTACAAATAGGTTTGAATCAAGTATGAATAAACTTGCAATAAGAT TATTATTTTTTACTGTGCAAAAGTAGCTGGCATATCTGAGTTGCTGATAAGGGAACATAAACAAG AAGAGGAAACGTAGAGAAGTGGAAAAAATAAAAGAATTTGCTGTTTTCTATAATAGCATTAAAGC TATTATCGTTTATATTATGCAGATTATTAGTTATGATCATCTGAG Found at