TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_IV Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 17493785 ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33 Found at i: i:11913201 original size:6 final size:6 Alignment explanation
Indices: 11913190--11913202 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 11913180 GCACTTGCAT 11913190 TTTTTA TTTTTA T 1 TTTTTA TTTTTA T 11913203 GAACAAATTT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85 Consensus pattern (6 bp): TTTTTA Left flanking sequence: Indices 11912690 -- 11913189 GATAAAACTATATATTAATATTCTTAAAATATTTTTGACATATAGAATTTTGAAAAATAGCATAA TTTTTGTAAATTCATTCACTAATTCTTTTAAAATTTTCAGGGAATGTCAATTGTATGCATTCTAA TTCACATTATTCAATCGACACTTCGACCTCCACAATGCTGTCATAACTCTTCAGGTAACAATCAA GTGATGAAAAAGATACGAGTAATTAATCAAAAAAAGAGCTGATTATATTTAATAAGATTGACTGC GGTTTTTAAACACATACTATGAACAAAGGTTTATGTAATTAACATTTTCAGGTACATTAATAATT GGCTTGCCACAAGTACATCCGCATAATTCATTTCAATATGTTCGATTAGAGAGTCAAAATGTGGA AACAGACTCTTGGCACAAAACGGCGTTCCCAGTTTTTGACGTGTAATAACAATTTTTCTGTATTG TATTAACCCTAATAAATGACATAATAATATACGAAGCACTTGCAT Right flanking sequence: Indices 11913203 -- 11913702 GAACAAATTTAAATTTGGAAAAGTGTTTCCCAAAAATAATACAAATGTAAAATATTATATGTGTA TTGATTTTAAATGTACATACCTACAGTAACAAATTAGAGTGTGATAAAACTTTCAAACGTGCAGT AACGGATGATAATTTAATTGAACTTAATTTTCGGCAGCACCGACAAGAAGAAAAATGAAAACTTT TCAGATTTTAGTCGCATAAGTTTTTTTTTGGAATTTTGAATCACTATAAGAATATTACAAGGTTT TTTTTCAGGAATCTTAATATGAAATTTTTCTTTTCATTTGGAGTTTACAGATTGGACGTCTGAGT CGAGTGAAATTTTTCAAATTTTAATTTTGTGGGGTTCGTCTGTGATCCGGGAAACCCCGGGCGTT CCGGTTTGCAAATCCAGTTCTTGAACGGTATGAGTAGAATTATTTCAGAATTGTGAACAACTAAA AATTCCAAAGAAAAAATTCATTATTTGGAAAAATTAAAACTCTTA Found at i:11916750 original size:4 final size:4 Alignment explanation
Indices: 11916733--11916762 Score: 53 Period size: 4 Copynumber: 7.5 Consensus size: 4 11916723 ACTATATTTT * 11916733 CTGC CTGC CCGC CTGC CTGC CTGC CTGC CT 1 CTGC CTGC CTGC CTGC CTGC CTGC CTGC CT 11916763 ACATGTCCTT Statistics Matches: 24, Mismatches: 2, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 4 24 1.00 ACGTcount: A:0.00, C:0.53, G:0.23, T:0.23 Consensus pattern (4 bp): CTGC Left flanking sequence: Indices 11916233 -- 11916732 GTGTTTTTGAGGCAGTTTTGACACAGATTTTTCTAGAAATACTGGTTTAGTTCTAGAAATGTTGA ATCACGTGACAGGCTCTAAAATGTTCCGTTTGAAAAATAAAATTTGCAGAAGAGTGCAATATTTT TCTTAAATTTCTTTGAAATGCATCCTACTTTCTCTGCAACTATTATTTATTCTTGGTACAGTTTT AATTGAGTTTTATTTTAATATTTATGGTTTCACGTAGGCTTGCCTGCCTTTTGCATGCCTACTGC AAGGTGATTGGTGTTTGCACCGTTTAGATTAACGTATTTTTCATTTCAATTAATTTGAAGATAGT TCAACTGGTTAACAATTCACATGTATTTTGTTAATAACATGTGAATACGTCTGGTACGTCTGTAT GTATGTGGTATGTCTGGGCAAGCGCAGGGCTAGTAGGCAGGCATTTCTTTGCCTACCTATCAGGT ATATGAATCGCCGTGTTCAGGTATGTTTAGTAATAACTATATTTT Right flanking sequence: Indices 11916763 -- 11917262 ACATGTCCTTCATAAAATAAACTTTGACAACCAATAAACTATCTATGAATTGTTTCGATTTCTCT TATTCCCTGCCATTTAGTAATCACGAAACTCTTTCAACTTTTAACTTTGTCCTCCACCTTGTTCA CGTTCACCTAGAAAACTTAGATGGTCAAGGTACACTTCTTCTCTTCTCACTTGATAGCTGACCAT TTCCTGAATATTTATCATTATCAGCTGACTATTTTCTTCTGAATCGCTTGCTCCACTACACTACT TTTTTTACCTACATACTGTAGCATCAACATGTTATTCTTGTGGATCATAGATTATTATCTCGTGT ACTTCAAATTTCAACAAATATGTTTACAGTAACTATCAGAAATGGTGTGTATTCTGTGCGATGCT GTTTGTTTGTTGATCTCATGAAAAGCGGGAAATTCGAATGTTTGATGTTCAATACATTTGAAAAT AAATTCCTCTGCAAGAAATTGTATTCTTTGACACATTTTACTTTG Found at i:11919060 original size:6 final size:6 Alignment explanation
Indices: 11919049--11919061 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 11919039 ATAATTGGTC 11919049 TTCCAT TTCCAT T 1 TTCCAT TTCCAT T 11919062 CATTTCTCTC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.15, C:0.31, G:0.00, T:0.54 Consensus pattern (6 bp): TTCCAT Left flanking sequence: Indices 11918549 -- 11919048 AACATGATCTCTTCTCTCTCTTCGTTGTTCTTCTCTGTCGTGCAGAGAATCTACAGTATTCCGAC TTTCCGCCGAGAATGCTCTTTCGAGCTTCCGAACTCTTCCCATCTGTGGAATATTCGCTGGAACT ATGTTTGCAGTGGTGCCTTCTGGTACAATATCATATGCATTTCCTTTGACAGGAATAATTATTCT TCGTGTGAAGACTGGTGTCCCGTGAGGACTGTGCACATTATTTGAAATATCTTGAGTTGAAGCAA CAATTGTTGTAGTCGTTGTTCTAGAAGCTGGCGGAGGTTCATAAGCATTATATCCATGATCAATA CTGTTAGTTTTCATAAATTTAATACTTCTTTTAGTCTCCTCGTTTCTTCGAATTCTTCTTTCCTC TGTCTCTACCAAACTTATTGGTCTTCGATTACTTGGAACTTCTCTTGTCACCCGATCTCTCATTA TATTAGAGTTAGAAACTCCAGAAGGACCTCTTCGTATAATTGGTC Right flanking sequence: Indices 11919062 -- 11919561 CATTTCTCTCATCATTGTCTCGATTCTTGTATTTGCACGTCTCTCTGGTGGTGCCGCAAGTTCCA TTGAAAAATCTGAAAAATATAGAGATATATTTCTCGAATTAGTTTCAAATGTTACCTTTTGAATA TGAAAACAATTTCAAAAATTCTTCTTCAATATTTCTATCATTTCCAACAATCGCGTTCTTCTTGA TGGTCCTCCTAGAATTTTCCACTCGAGATCCATGAAGCTTCAATGGGAGATAGAAACTAAGATCT TGCCGGATCTGAATATTAAATTTTTTAAATTGAAAACTTAGACATTATTTTTGAAAAATTGAAAA AAAAAGCAACTTACATTTCTCTCTGAAACACTGTGACCATGGAATGAAGATGGGCGTTTCTGTCG TTTTCCTCGAAGTGTTTGCATTATTTTGAGACGTTCCAACTGTGCCAAACTGACCAAATGGGATG ATTGAGAGACAATTAAGTCAATCTGAAATTTACATTAAAAAAAAA i:11921107 original size:3 final size:3 Alignment explanation
Indices: 11921099--11921111 Score: 26 Period size: 3 Copynumber: 4.3 Consensus size: 3 11921089 TACTTCTATG 11921099 ATC ATC ATC ATC A 1 ATC ATC ATC ATC A 11921112 AATATTTGTT Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 10 1.00 ACGTcount: A:0.38, C:0.31, G:0.00, T:0.31 Consensus pattern (3 bp): ATC Left flanking sequence: Indices 11920599 -- 11921098 AAGTTGGTTGAGGTATGTGAGTGGAACGACGGCGAAGTCCAAGAAGATCCAGGAATGAGGAACGA CTTGTCGCTAAATGTTAAACTTTCAATTTTGAGTGAACCCTTTTCCGATTCTTTAATTTTTTCTT TTCTAAAAAATTATCTTGTTTCTGGTAGGAATGGTAGGCAGGTCCAGTCTCAGGGTCTAACGCCT ACCTGAAACCTGCCGGTCTCATCCGCAAATTTCTCATTTTCTTAAGTCTTAGTTTTCTATTATTT TATACTGGCATGAGCTTCAATTGTACAGAAATTTAATAAAATAATATGAAATTTTGTATGGAAAA TTGTTGAAGAAAGTGTTATTTCAAAATGATCAAATGATCACTCACTCATTGTCTCTGAAGGGTCT CTGGACGAAGAGGCCGATGATGGAGATGTGCATGCTGACGTGGAATTATCATTTTGATGACGTGG AACATTAACAGAATCACATCTTCTTGTTGTATCCCTACTTCTATG Right flanking sequence: Indices 11921112 -- 11921611 AATATTTGTTCATCAATTTCACTATCACTCTGCTCGGGACGAACAATCGGAGGTGCTCTATTTCT TCCATAAGAAACATCTGAAGATGTATTCATTGAATTACTCGTTTCTTTTCTTGGTGGAGTTGATA GTCGTTCTCGTGCTCCATTTCTAATTTCCATTGATTCTGAGGATCGATTGGCTCGCCGAAGTTTC GGGAAGATTGAGGATCCACGATGTTCTAACATTGCAGACATTCGTTGAACCACATTTTTTGTGTT ACGAGGAGCAGGGACTAAACGAGTTTTCAAGCGAAGATTCTCATTTCGAAGAGAACCAATTTCAT CAACGAGGGAGCATAAGACAGCTGAAAAATGATGGACACCATGGAAATAAATAATTGATAACTCA CAAAGAATTGGTGGCCCATCATCAGAAGGGGGTTCACTTTCTTTCACATTTTCATTTGTCTGATC CATCATTTGCTCCAACTCTCGGACGAACTCTTCTTCCTCAGATTC Found at i:11922576 original size:6 final size:6 Alignment explanation
Indices: 11922565--11922577 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 11922555 ATTGACCTTG 11922565 TCAACT TCAACT T 1 TCAACT TCAACT T 11922578 TGGCAGCCGC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.31, C:0.31, G:0.00, T:0.38 Consensus pattern (6 bp): TCAACT Left flanking sequence: Indices 11922065 -- 11922564 TTAGGGTGTTGATTTGACATTATGCACGGCCGCAAAGATCGAATGATGAAATGCAACTAGTTGTC CTTCCTGATGAAATAAGGGTGTAATTGAGCAGTTGGTTGATAGAGGGGACACACCGTCAAAACAC GCGCACTTTGTAACATTTTGGGGAAGGAACGGCGAAAAGGAGAAGAAGATCGGGTTTCCGACTGT TTCCAAAGTAATTCAAGGTTATTGGTTATTGGGTTTTCAATAAATTTAAAGTATGGAAGAAACGG GAAAAGATTGTACACGTTTATTTATAAACGAAACGGAAATTGTTTTTAATTAGCATAATTTATTG ATGCTTTCTTCTTCCACCCTTTCCTTCCGATCCTTTTGTCTCATTTCTACGTGGATGCTCGAAAA GACCACCGATATAGAAGAGAGTCGGGATTTCTTGTGGGTAGGTCTTCTTGAGCTCATCGATTTTC TCGTCTCTCTGAATCTTCGTCAAACTCAAATCAGCATTGACCTTG Right flanking sequence: Indices 11922578 -- 11923077 TGGCAGCCGCAAGACGATCGATGACTCCACTGATATTCTTGCTCACTTCTTCCTTGTGAATGGTC ATGTTCTTTGAGAACTCGGCGTATTGCTCCTGAAATTTTATAGTTAAAATTGAATAACAATTTTT GACAAGTTATATTTTTTGTTTCTAGAAAACGACATTTATTATTTAAATTTTTTCTTAAAAGGCAC GCAAACGTAACATGAAAATCCACATAGACCTAATTTGTGGCACGCATTTCTCATATTGTGTTAAC TGTTTCTAATACTTTAACTAATAATTTCAGATCAATAAAAAAAAATTTCAGATCAATAATCTGAA TATTTTAACGTATTCAACTCACCGAAAGGTTATTATCCTCTGCCCATTTCACAAGTTTATCGTCC TTCTGTTGAAATGAAATTCCTGGATTCTTGACGATTCCAAAGAACGAGCTTCTCTGAGAATTTGT GAGATTTTTCACGAAATCTGGCTCATTTCCTTTCTGATGATGTTT Found at i:11926916 original size:6 final size:6 Alignment explanation
Indices: 11926905--11926917 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 11926895 AAAACTTCCT 11926905 CGATAC CGATAC C 1 CGATAC CGATAC C 11926918 ATTCAAGAGT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.31, C:0.38, G:0.15, T:0.15 Consensus pattern (6 bp): CGATAC Left flanking sequence: Indices 11926405 -- 11926904 GACGGAAAATTGTGGGAAATTGCAATTTTAAAAATACATATACTACTTTTCGATTAAAAAAATGC TGAACCCAATTCCAACATAATCTTTTTCCCGTTTGGAAATCTTTCTCAATTACAGAGGAAATGCA GATGCTTCAGTTTCGGCTGGAAGTTCTGGATCCAACTTCCTCTCTGGTCTTCAAAACTCATCGTT TGGTCAGGCAGTCATGGGCGGAATTAATACATAGTAAGCTATCTATTTCCTTTTTTGTTTTTTAT GTCCACTATTCAACTTTCAGCAATCAGGCAAAAAATTCAAGCGGTGGAAACTGGCAAACGTAAGT TGTTATTTTTCCATAAATTTATCAAAATTGTTTATTTCCAGAGCTGTTGCCAACTCATCAGTTGG TAATTTCTTCCAAAACGGAATTGATTTCTTGTGAGTGCTAGACTGCAATTCGAAATTTATGAATG TTATATTTTCAGCAATGGAATGAAAAATGGAACTCAAAACTTCCT Right flanking sequence: Indices 11926918 -- 11927417 ATTCAAGAGTAGGTTGATTCAAATTTAAATTAAAGTACATGGAATAAACTCTTACATTTCAGAAC CATTGGAAATTCCTCGTTCGGAGAAGTTGTGCAGACTGGAGTTGAATTCTTGTAAGTTCTGGATT AAAATAATTAAGCGTCTTGAGTAGGCTTCTATGAAAGCAGGCCTTCCTTATAGGCCTACGCGATG CCCGCCTCCTGTGTTGTTTTGTAATAAACAAATTAATGTTTCAGCAACAACATCAAAAACGGAAA CTCGCCATTCCAAGGAGATGCTTCTTCCGTCATGTCGCAGTTTGTTCCATTCCTCGCCAACGCAT CAGCCGAAGCGAAAGCTGAATTCTACACAATTCTACCAAATTTCGGAAATATGACAATTGCTGAG TTCGAAACAGCCGTCAATGCATGGGCTGCAAAGTATAATCTGACTGACGAGGTTGAAGCATTCAA TGAAAGATCCAAGAATGCGACTGTTGTGGCTGAAGAACATGCTAA Found at i:11928257 original size:6 final size:6 Alignment explanation
Indices: 11928248--11928272 Score: 43 Period size: 6 Copynumber: 4.2 Consensus size: 6 11928238 AGCAAACAAA * 11928248 AATAAG AATAAG AATAAG AAAAAG A 1 AATAAG AATAAG AATAAG AATAAG A 11928273 CAACAATTGC Statistics Matches: 18, Mismatches: 1, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 6 18 1.00 ACGTcount: A:0.72, C:0.00, G:0.16, T:0.12 Consensus pattern (6 bp): AATAAG Left flanking sequence: Indices 11927748 -- 11928247 TTTCATAAACTTTTTATAATTTCAGTGCGTTGATCAAGGAAACTTTTTGACAAACATGTACAACA AGGCATCCGACTTTTTCGCAGGTAGAAATAACAGAACTGATGGTGAAGGAAGCTTCTGGAGTGGA CAAGGACAAAATGGAAATAGCGGAGGATCTGGTTTCTCCTCATTTTTCAACAATTTCAATGGACA AGGAAATGGAAATGGAAACGGAGCACAAAATCCAATGATCGGAATGTTTAACAATTTTATGAAGG TCAGTGAGTTACATAGATTATCATGTATACTAAAATAATTTTCAGAAGAACAACATTACTGCCGA TGAAGCTAATGCAGCGATGGCTGATGGTGGAGCATCTATTCAAATTCTTCCAGCCATTTCAGCTG GTTGGGGTGATGTTGCTCAAGTGAAAATTGGCGGTGATTTCAAGATTGCTGTCGAGGAGGAAACG AAAACCACCAAAAAGAATAAGAAGCAACAACAACAAGCAAACAAA Right flanking sequence: Indices 11928273 -- 11928772 CAACAATTGCACCAGAAGCTGCTATCGATGCCAACATCGCAGCTGAAGTACATACCCAAGTTCTT TAGAAACCGTTTTGAATGAATAAATACATTCGGAAAAGTTATATAAAAGAGTTTTCACATGTTTT CTGAATTCCCTATTATGAGACGTTTCTTTTTCTTGCAAAAAGATCTGCACGAAGTGGGATTCGAA CCCACGCACCCATACGAGTACCAGAACACCCAGTCGACCTCGAACTCGAGGCAAGCAATTGCTTG AGTCTGGCGCCTTAGACCACTCGGCCATCCGTGCGTTCTTGAGAACATCAAATGTGGCTAGACAT TCCTGCTATCGCTCGGGCGGGCGGAGTAGACTGTTGTTAAACGGACGCAGGTTGGACGAATTCGA AAATAATACCCCTGATGATTCCTAAATTTCACAATCTCTACAAAACCTCCCACATTGTTCTCTAT ATAGTTCACCTCCAAATTTCTTCATATTATGTGAATATTGGTATA Found at i:11928515 original size:6 final size:6 Alignment explanation
Indices: 11928501--11928516 Score: 25 Period size: 6 Copynumber: 2.7 Consensus size: 6 11928491 GAACACCCAG * 11928501 TCGACC TCGAAC TCGA 1 TCGAAC TCGAAC TCGA 11928517 GGCAAGCAAT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 6 9 1.00 ACGTcount: A:0.25, C:0.38, G:0.19, T:0.19 Consensus pattern (6 bp): TCGAAC Left flanking sequence: Indices 11928001 -- 11928500 ATGAAGGTCAGTGAGTTACATAGATTATCATGTATACTAAAATAATTTTCAGAAGAACAACATTA CTGCCGATGAAGCTAATGCAGCGATGGCTGATGGTGGAGCATCTATTCAAATTCTTCCAGCCATT TCAGCTGGTTGGGGTGATGTTGCTCAAGTGAAAATTGGCGGTGATTTCAAGATTGCTGTCGAGGA GGAAACGAAAACCACCAAAAAGAATAAGAAGCAACAACAACAAGCAAACAAAAATAAGAATAAGA ATAAGAAAAAGACAACAATTGCACCAGAAGCTGCTATCGATGCCAACATCGCAGCTGAAGTACAT ACCCAAGTTCTTTAGAAACCGTTTTGAATGAATAAATACATTCGGAAAAGTTATATAAAAGAGTT TTCACATGTTTTCTGAATTCCCTATTATGAGACGTTTCTTTTTCTTGCAAAAAGATCTGCACGAA GTGGGATTCGAACCCACGCACCCATACGAGTACCAGAACACCCAG Right flanking sequence: Indices 11928517 -- 11929016 GGCAAGCAATTGCTTGAGTCTGGCGCCTTAGACCACTCGGCCATCCGTGCGTTCTTGAGAACATC AAATGTGGCTAGACATTCCTGCTATCGCTCGGGCGGGCGGAGTAGACTGTTGTTAAACGGACGCA GGTTGGACGAATTCGAAAATAATACCCCTGATGATTCCTAAATTTCACAATCTCTACAAAACCTC CCACATTGTTCTCTATATAGTTCACCTCCAAATTTCTTCATATTATGTGAATATTGGTATAAAAA TGTGAATATTGGTTGGAAATTTGCATAAAACCATTTTTCGGGATGATAATCCATTCAATCATGAT CTTTTCCTTGTGACACTTTCAAATTCGATCGACTTTTCGCTGTTTCTAGCCATTATCAATGATCG AGACTGTGGCAAAAACCGGAATTTCTTTTCAGTCCCGACTTTCGGTCTTCTATAAAATATGTTAT TGCATTTCTAGGTTACGTTCATATATTTTAAAAATTCTTTATCAA Found at i:11929325 original size:6 final size:6 Alignment explanation
Indices: 11929316--11929333 Score: 29 Period size: 6 Copynumber: 3.0 Consensus size: 6 11929306 AGCTTTTCTA * 11929316 GTTTTT GTTTTT ATTTTT 1 GTTTTT GTTTTT GTTTTT 11929334 TTAATTTTTC Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 6 11 1.00 ACGTcount: A:0.06, C:0.00, G:0.11, T:0.83 Consensus pattern (6 bp): GTTTTT Left flanking sequence: Indices 11928816 -- 11929315 GGGATGATAATCCATTCAATCATGATCTTTTCCTTGTGACACTTTCAAATTCGATCGACTTTTCG CTGTTTCTAGCCATTATCAATGATCGAGACTGTGGCAAAAACCGGAATTTCTTTTCAGTCCCGAC TTTCGGTCTTCTATAAAATATGTTATTGCATTTCTAGGTTACGTTCATATATTTTAAAAATTCTT TATCAATGATTTGATACCAGCTTTCGACCGAATTCTTTTGTACATTCAGGCTTGTGACGTCATTG TATTGTTATTTCTAAAATGTAAATCAGTTACAGTATGATTTCAAAAAGTGTGAGATCGGGAGAGT TTTCCGAGAAAGCAACAACGAAAAAGCTGTAAAGAATTCCGAAATTTCTGTTTTTAGGCTGCCAC TATATCTTTATCGAAACGTTTTCTTCCTATTTTTCCAACTCCTGACGCGAGCGAAACTTTTCAGC TACCGTACCCGAGTATTTTTCTATTTTACAACTTTAGCTTTTCTA Right flanking sequence: Indices 11929334 -- 11929833 TTAATTTTTCCGATTTTTCGATAACTTCGCCATCGTTTTTCAAGAAAAAATACGTATTTTCGAAA AAAATTCAAAAAATGCTGAAAAAAGATAGAAAATTGAATTGGAAAATAGAGGAAAAAATATAACT ACCGTACTCGCTGGTACGGTAGCTGACTAATTTTGCGCTAGGACCTTCTTCGTAGCAAGGAAGTA TACCAGGAAAAAATTTTAAGGTTTTTTTGCGCATTACTGGAAAAATTCTGTTAGATTTTCATAAT TCTCATAAATTGAACAATTATCACAGTTTTTGGATTTTAAAGCTATTATTGCCCATTCCCATTCA ATTTTTAAATTTTCAAATATAGTTAAAAGCCATTTCTCCGTTTCGTGAGACGTGATTCATACAGA TCATATTCAACATTTTTGCTGTGATTACATATGTTATGTGTTAATATTATAAATATGGTATATTA TTTAAAAATAAAAAAAACACACAGTTTGGGGTTTTGGCAAATAGA Found at i:11929656 original size:6 final size:6 Alignment explanation
Indices: 11929645--11929657 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 11929635 GCTATTATTG 11929645 CCCATT CCCATT C 1 CCCATT CCCATT C 11929658 AATTTTTAAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.15, C:0.54, G:0.00, T:0.31 Consensus pattern (6 bp): CCCATT Left flanking sequence: Indices 11929145 -- 11929644 CGAGAAAGCAACAACGAAAAAGCTGTAAAGAATTCCGAAATTTCTGTTTTTAGGCTGCCACTATA TCTTTATCGAAACGTTTTCTTCCTATTTTTCCAACTCCTGACGCGAGCGAAACTTTTCAGCTACC GTACCCGAGTATTTTTCTATTTTACAACTTTAGCTTTTCTAGTTTTTGTTTTTATTTTTTTAATT TTTCCGATTTTTCGATAACTTCGCCATCGTTTTTCAAGAAAAAATACGTATTTTCGAAAAAAATT CAAAAAATGCTGAAAAAAGATAGAAAATTGAATTGGAAAATAGAGGAAAAAATATAACTACCGTA CTCGCTGGTACGGTAGCTGACTAATTTTGCGCTAGGACCTTCTTCGTAGCAAGGAAGTATACCAG GAAAAAATTTTAAGGTTTTTTTGCGCATTACTGGAAAAATTCTGTTAGATTTTCATAATTCTCAT AAATTGAACAATTATCACAGTTTTTGGATTTTAAAGCTATTATTG Right flanking sequence: Indices 11929658 -- 11930157 AATTTTTAAATTTTCAAATATAGTTAAAAGCCATTTCTCCGTTTCGTGAGACGTGATTCATACAG ATCATATTCAACATTTTTGCTGTGATTACATATGTTATGTGTTAATATTATAAATATGGTATATT ATTTAAAAATAAAAAAAACACACAGTTTGGGGTTTTGGCAAATAGAGATGTCTTCAATATATTAA AATTTTGTAATAATTGAGGAATTACAAAAATTGCAACAAAAAACACTTCCATTGTTATTGCACCT CACAAAAAGTGATGACAGCTATTAATATATTATCACCTAATAAAATTCCCACTTGAAAACAAATA AAACATTCAAAATGTGTCAAAATGATCAAAATTCAAGTTTTGAATTAGTTTTTATTTAAACCCGA ACTTTGATAGGTATCTTCTCTAACTCAATACCTGTCTCCAATGTGCCTACACCTGTTCCCAAAAT ACACGCAACTTCTGTTTAGCTAACTGTACGAACACCTACATTCAC Found at i:11930572 original size:1 final size:1 Alignment explanation
Indices: 11930566--11930580 Score: 30 Period size: 1 Copynumber: 15.0 Consensus size: 1 11930556 CGTTGAATAT 11930566 GGGGGGGGGGGGGGG 1 GGGGGGGGGGGGGGG 11930581 TCAAACCAAT Statistics Matches: 14, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 14 1.00 ACGTcount: A:0.00, C:0.00, G:1.00, T:0.00 Consensus pattern (1 bp): G Left flanking sequence: Indices 11930066 -- 11930565 TCTAACTCAATACCTGTCTCCAATGTGCCTACACCTGTTCCCAAAATACACGCAACTTCTGTTTA GCTAACTGTACGAACACCTACATTCACAACTAAATACAAAAAAAATTGGAGGCAGGCATGAGACA GGCATGCCCGCCTACCAGCAATAGATTTTCCAATTCTGACAACCTGACCATTCAAATTCGAACAT AAAATTTTAGCACCAAAATTTATTGAATGTACTTCGTATTACTTTATATACATAGGACATTTTGT TACCTTTTGTCATTCAGTTGATTTTTCATCATAAACTTGAACACTCACGTCATATTGAATAGATT ACTATTAAATATTCAATTTCAGAAAAGAGAATATTGGAAAAAAAAACTTGTTTACTAGATTAATG CATTAACCTGTAACTATAAAACAAAGCAGCATGTTCAAATTCTAATAATTCATCTAAAAATATGT AGTACAAATTATTTAATTTTGTAGATTTTTGAACTCGTTGAATAT Right flanking sequence: Indices 11930581 -- 11931080 TCAAACCAATGTAGTTTTCAAATGACGTGATATATCCAAATACTAGTCTTCAAACTGGAAATCCC GTACTCTCGTACCTCCCGTACTCTTCCTTCTTCAACGGTTGAATAGTTATTTTAAACGCTTTTTA CTGGTATTCAACAATATGTTCTGATGATTCATTATTACTTGTTTCATTACGTATTTCCTGTTCTA ATTTCCGTTCGCCAAAGTTCTTGTTAAAACTTCGAGTAAAATTCCGATTTTTGATTCTCTTTTCA GGAGATGTCTTCTCGTCTTTTTGTCTTCTTTCTTATCTGCTACGCAACGGCTGACAAAATCGAGA AAGAGTTGATTTCAGATGGATTTCAGGTTGGGATTTTTTTGTTGAAATTTAAATTAAATTTGAAA TTAAATCTGAAAATGCTTACACTATTTTCCTAAAACTTACCGTCATTTGGAATTTGTTTTTGTTG AGAGTTCCTTTGTTGCTCTAAAAAATCTGAAATATGAAATCTGAA Found at i:11936014 original size:6 final size:6 Alignment explanation
Indices: 11936003--11936017 Score: 30 Period size: 6 Copynumber: 2.5 Consensus size: 6 11935993 AAAAACACCC 11936003 CATACA CATACA CAT 1 CATACA CATACA CAT 11936018 TCTTTCGCTC Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 9 1.00 ACGTcount: A:0.47, C:0.33, G:0.00, T:0.20 Consensus pattern (6 bp): CATACA Left flanking sequence: Indices 11935503 -- 11936002 GTACGGAACAACTGCCATCAGAAACGCCATTTCATAGTGGTAGAAGACAATCGACAGGAGATTTA AATGCAACACGAAGAGCTGATTTCAATGTTTGACATTCAATTGAAACCTCTTCGATATGTTTTTG TAGTAATTCTCGCCATAACGAAAAAAAACTGTAATAATAATAAATTTATCGCTTTTATTGAAACA TTTCAAAGTTTCATCAGAGTGGGGAACTTCATCAAAACAAGTATCAAGGCAATTTTGAAATGAAA ATAAACTTCATAAAATTTCGAAAAAAATTTTGGTTAGTTTTCTTATCAAAGTAGATTTCAGCTAG AAACTGGTAATGTAAATTTTTGATTCACAGATTGTTTTCTTCTCTCAAAATTTTGGTTCTGATAT TCACAGTTAGATTCATATACAAAATTTCAAAACTTTGTTCTAAAGTTTTATTATTCACACCTGAC AACAAATCTAACCTGGAGACTTAGACAGACTTCTAAAAAACACCC Right flanking sequence: Indices 11936018 -- 11936517 TCTTTCGCTCTTTTTCATCTCTCTTACTCTCAATTTTCCGTCATTTTCCACTGGCCTGTTACACT GGTCGAAAAGTATGCTCACATAAGATATAGAGAGACAGATAGCACAATAAATGAGGAGACATTAA TTGTACCAATACCGACAAAGATATCTCACCCCCTTCCCGAAACCATGCTTTGATTTTTTTTTTCA ATCATTTTATTTCGATTTAAAAAATTTTCACAGGAGGTCCCAATTTTTGTTCGACCAGATGCAGC TTTGCAAAATAATATACGAGTTGTAATAGGAGTTAGAGGAAAATATATTTTATGTGCCATGCCTC AAAATAGCTAGGAAAAATAACTTGAACGTTCAGGGAAAACTCATAAGAATATTTTTCTTAAAACT TTACTACTTTTATATGGGGAAACTTTTTGAAATTTTTTAATGATTTTCAAATATTTCAATACAAT ATTAATGTTTTTTTTAAATTTTGAACTTACTCACAATCAAAAAAC Found at i:11937858 original size:6 final size:6 Alignment explanation
Indices: 11937847--11937859 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 11937837 GGCTTTCAGG 11937847 TCAATT TCAATT T 1 TCAATT TCAATT T 11937860 TTTCAAACTC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.31, C:0.15, G:0.00, T:0.54 Consensus pattern (6 bp): TCAATT Left flanking sequence: Indices 11937347 -- 11937846 CCGTTTCATTTTTTTGTCATCTTTTCATTTTTGCGTTTTAGAATGTCTAAGGACGTCTCACTTCA TTGGTTGGATTATGCGATTTTTGGATTGAGCATTGGATTATCATTGAGCACAGGAGTATATCATG CAATTAAGTGAGTTAATTTGTTTTTGAAACAATTTTTACTCATTTTTAGCAATTTCTGTCATCAC AAAAAACTCAGATCTCCAAATTCTTATAACTTCTGAATCAAATGTGGCACGTATACTTTAAATAT TTTGCTTCAAATATTTTATTAAACAAAAAAAAAGAGCTTTTCATTGCGATTTCGTAGCTTCTATT TGAGAAATTTCAATTTTCTATAGTTTTTTGATAAAATTGAAATTTTGAAAATTTCCAATTAAAAA ACAATTACAAAAAGCACTATCTCAACTTTAGGACAAAACAGTTGGCACACTTTTTGGGGAATTCC TCTCTTTTTAGGATTAAAAAAAATCAGCAAAAAAAGGCTTTCAGG Right flanking sequence: Indices 11937860 -- 11938359 TTTCAAACTCAATACTTTAGTATTGAAAAGTCCCTCGATTTTTCTAAATAATAATGTTGAAAATT TTTTAATATTTCCATATTGTCAAAAGTTATTAAATTACTTTTTAGAAAAAATCCAGAAAAAATCC ATCTCCAATTTGTTCTTTATTCCAGAAGTCGAATAATTCTCCGTCGAGGGGACAGAACAGCAAAA GAGGAATATTTGATGGGAGGTCGACAACTTCCCCCACTTCCAGTTGCTCTGTCCCTTTTAACGAC ATTTCTTTCTGGAATCCTTATGCTTGGGGTACCGGCTGAAATGTTCCAGAGAGGTGCTCAAATCT GGTTGAACTTTGTGATTGGGGTGGCGTCATCGATTGTCACGTGTTTTGTGTTTCTTCCGGTTTTT CACAAAATGAAGAGCACATGTCTACATGAGTATTTCATTCATCGGTGGGTTATTTTCAGATTCAA AATTTTCCAGAAAATTGTGAAATCTTTAACGTCGAGGAATTGTAA Found at i:11940703 original size:6 final size:6 Alignment explanation
Indices: 11940692--11940704 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 11940682 CTGGAAAAGA 11940692 TTTTAT TTTTAT T 1 TTTTAT TTTTAT T 11940705 ATCATAAATA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85 Consensus pattern (6 bp): TTTTAT Left flanking sequence: Indices 11940192 -- 11940691 CCAACTTATGATGCTCATTATGGAAATCCGGATACTTTGTACATTTCAAGAATATCCACGTATTC TTACGCAGGAGTCGGCTTTGTACTTATGATCATCATCGGATGGATCGCCTCACTTTTCGAAGAGT CTGATCATAAAGTTGAGAAGATCCGACATTTAACATTTTCTGGCAGAAAGTAAGTTTAAGATTTT ATTATAATCCCGAAATAACTTTTATCATTTACAGCGAGCCCTGGCCAGATACACATCATGAGTTT GACCATTTCTTGAAAGAAATCAAATAGAAAGCATGACAAATTGCGTGTTAATTAGGATGAAAGCT AGATTGTGTTTTGATAAAAACGGGTGATCCGGAAATTTGAAATAAAATTATTCCATTCAAGCTTT TGCCATTTGTTCCTTGAAATCCGACATGTCAATATTGCAACATAAACGAGAACCTCCATCGATTA TAATACTTTGTCCGACTATACATTCAGACACTTTTCTGGAAAAGA Right flanking sequence: Indices 11940705 -- 11941204 ATCATAAATAACGTTTTCTCTAGTGGAGGCGTCTCGGGAGCGCATTTTCCCGTTATTTATTGTCC AGTCAGATGGCAGATTTTTTTGTTAGTGTTCCAATTATGTTTCGTGTTGTTTGATTTTATAGGAG ATTATTTTACTCATTCTAGATTTTTTGAAATCCCGATCAACTTTGTGATTTGTTTTTAGATTATC TACAGTACATGTGACTAGCTCCTGCCCGCTTTCACTTTCCCGGACCTCCAAAAAAAATGAAATCC AAAAAATTGAAATACAGGGATCCAATAAAGTGGCATTGTGGCAACAAATTGCACACAGAGGATAC AATATACACTGTTGAGCACAAGGAGCGCGAGTTAACGTGGGTTAGAGGCGCTTACATGACGCCAC AAGTGACTGATCTACCGTAGTCAGCAAACATTGAAAATAAGTTTTAAATGCATTTTGAAGCAATT TTCTTCCTTTAAAGAATCTCACCTGTCGGCCAAAAATAATATAGT Found at i:11943501 original size:6 final size:6 Alignment explanation
Indices: 11943490--11943502 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 11943480 GTTCTCTAAT 11943490 TCGAAC TCGAAC T 1 TCGAAC TCGAAC T 11943503 TCATCAGTTT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.31, C:0.31, G:0.15, T:0.23 Consensus pattern (6 bp): TCGAAC Left flanking sequence: Indices 11942990 -- 11943489 CAATGTACATAGAATATTACTCTCCAATCAGATCAATTTATGTTCGAAACAATCAACTCCTATCC GTTTTTATTCTTTACCAGCCGTGGTCCGCTCCTTCGGCGCGGCCCCCGACTTCTAGGGCTGAAAA TTAATTTTTATGAAACTACCGTAACCCTACAGTATTCCTACCGTACCACTATTGTACCACTACAG TACCCCGACTATATCCCTACACTAACCCCAACTCACTATCCCTCCAGAAGTCAAAACTTCACAGA CTACAAAGACTACACAGACTACAAACTATGGACACACAGAATAAGCGCTTTATATATATAGTAAA TGATTTCTACAAATGACATCCATCCCAAAACCGTAAAAACGCTCTTTTGTGAGTAATCAAGAGAC GTGTCCTCCGTCGGAACATCTTTTTACTATAGTCCATTGCGACGCGACATTTGAAATCGTCACGC ATTAGTTCGATTTCACAAACTTCAGAAGACACTCGGTTCTCTAAT Right flanking sequence: Indices 11943503 -- 11944002 TCATCAGTTTTTGTCGGTCTTCAATTGTCGATTTGTAGGATGTACACCTAAACAAACAAATTAAT TTAATTTAATTGTACTTGATGTGATTGCCTTCCAAGTGCATCCTCGTAAATACTCAAATTATCAA ATTGAACAACTTTCGGTATGTAGATGGAACGGGACGGCTGAAATTTTGTGAAACTTTTTAAAAAA TTTTGTGAAAAATTTTTTAAAAATAAATGTTCAACTGTACTTAATTTTCGTACTTTCTCCATTAA AAATATTTCGTTTGATTAATAAAAAAGAAGTTGCATTTTTTGTACTATTTAACCTTTTACTACTT AAAAAAAAGTTCTGATCAGCTCAAAAATAACTGTGGTTATGTATTTATAGGTAGGCTGTGAAAAT GACTGATGTTTTCCACATGAAAAAATAATGAATTGCCGTTTTTCCTAGGGAAACAGTGTTAAATT GATAAATTTAAGTTCAAATTTGTTGCCATATTTTACTATTTAAGA Found at i:11943573 original size:5 final size:5 Alignment explanation
Indices: 11943563--11943578 Score: 32 Period size: 5 Copynumber: 3.2 Consensus size: 5 11943553 AACAAACAAA 11943563 TTAAT TTAAT TTAAT T 1 TTAAT TTAAT TTAAT T 11943579 GTACTTGATG Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 11 1.00 ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62 Consensus pattern (5 bp): TTAAT Left flanking sequence: Indices 11943063 -- 11943562 TCTTTACCAGCCGTGGTCCGCTCCTTCGGCGCGGCCCCCGACTTCTAGGGCTGAAAATTAATTTT TATGAAACTACCGTAACCCTACAGTATTCCTACCGTACCACTATTGTACCACTACAGTACCCCGA CTATATCCCTACACTAACCCCAACTCACTATCCCTCCAGAAGTCAAAACTTCACAGACTACAAAG ACTACACAGACTACAAACTATGGACACACAGAATAAGCGCTTTATATATATAGTAAATGATTTCT ACAAATGACATCCATCCCAAAACCGTAAAAACGCTCTTTTGTGAGTAATCAAGAGACGTGTCCTC CGTCGGAACATCTTTTTACTATAGTCCATTGCGACGCGACATTTGAAATCGTCACGCATTAGTTC GATTTCACAAACTTCAGAAGACACTCGGTTCTCTAATTCGAACTCGAACTTCATCAGTTTTTGTC GGTCTTCAATTGTCGATTTGTAGGATGTACACCTAAACAAACAAA Right flanking sequence: Indices 11943579 -- 11944078 GTACTTGATGTGATTGCCTTCCAAGTGCATCCTCGTAAATACTCAAATTATCAAATTGAACAACT TTCGGTATGTAGATGGAACGGGACGGCTGAAATTTTGTGAAACTTTTTAAAAAATTTTGTGAAAA ATTTTTTAAAAATAAATGTTCAACTGTACTTAATTTTCGTACTTTCTCCATTAAAAATATTTCGT TTGATTAATAAAAAAGAAGTTGCATTTTTTGTACTATTTAACCTTTTACTACTTAAAAAAAAGTT CTGATCAGCTCAAAAATAACTGTGGTTATGTATTTATAGGTAGGCTGTGAAAATGACTGATGTTT TCCACATGAAAAAATAATGAATTGCCGTTTTTCCTAGGGAAACAGTGTTAAATTGATAAATTTAA GTTCAAATTTGTTGCCATATTTTACTATTTAAGAAGTGATGATCGGCTCCTAAAATAATTGAGGT AAAGTGATTGAAATAAATGGAAATTTTATATAAAAAAGCTTGAAA Found at i:11949845 original size:6 final size:6 Alignment explanation
Indices: 11949834--11949852 Score: 31 Period size: 6 Copynumber: 3.2 Consensus size: 6 11949824 GCGGAAAGAT * 11949834 TTTAAA TTTAAA TTGAAA T 1 TTTAAA TTTAAA TTTAAA T 11949853 CAAAGTTGAA Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 6 12 1.00 ACGTcount: A:0.47, C:0.00, G:0.05, T:0.47 Consensus pattern (6 bp): TTTAAA Left flanking sequence: Indices 11949334 -- 11949833 ACAGAAACGAGAAATTACGAAAGCTTTTACCTTTTTATCCTTATTCATAACTTTCAAACAAAACG GCCCATCCTTTGTAATTGGCATTGCTGTTGTATTTATCACATGGAATATCTGAAACTCCTATGAG TTTCCAACTCTAGATCAATTCCAACTAACCACTCTATTATTCAAATCATAAACTTTATAATCACT TCTTGCATGTTTCCTTTGCAATGATTCATTCATGTGCAAGTCGCGAAACAATGAAAATGCGGCTG CATTCTTCAGACGACCCCATTGTTGAGTTTTATCAACTGTCTGAATTTAGAATGATTTATATAGA ATCAGTTGAATTGTGTTACCTGCTCGAACTCAATTTCCGCGGTGTCTTCTATCAAAGTTTCTCCT TTTTCGGACATTTTTGATAATTATTGAATAAAAAGTCTTTTTTAAAGACAATAAACGTAGGAATG AATCAGTTTTGAAAGAAATTGACGGAAGCGAAAACGCGGAAAGAT Right flanking sequence: Indices 11949853 -- 11950352 CAAAGTTGAACAAGTTGAACAGGCCACGTTAAACTTTTTAAACAGAATTTTCAAATTCCTAACGA ACCAAAGTTCGGACAATATTGAATTCATATATTGAATTCAATGCGACATTTTTTAGATTTCAAAT AAAAATAAATAAAAAATCTAACTGTTACTGTATCGTCAATTGGGTCTAATTATACTCAAAGTAGT TCAAAAATGACCAAATATCATAATTAAACACTCCAAAAGTGTTTAGATTTTTCCAAATTTTCAGC CAAAGTTTTCGCATATTGCCAAATTTTCCAGAAGTTTTGGCATTTTGAGAAGGTTCGAGTATTGC TGCAAATTAGAATCTCATACATCTCATACAACATTCAAATAAAATAATGAGAACATTTTTTGAAA ATTCAAATCATGAAAAAACATGAAACTCCCAAAAATATGATCGGGGAAACTGAGTTTTCCCCAAT TTTTAATGTAAATCATTTCAAAAAATTTTCGACAACATTAAATGA Found at i:11951833 original size:6 final size:6 Alignment explanation
Indices: 11951822--11951839 Score: 29 Period size: 6 Copynumber: 3.2 Consensus size: 6 11951812 ATCGTACCTT 11951822 TATCAA TATCAA TA-CAA T 1 TATCAA TATCAA TATCAA T 11951840 TCTCCACAAT Statistics Matches: 12, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 5 4 0.33 6 8 0.67 ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33 Consensus pattern (6 bp): TATCAA Left flanking sequence: Indices 11951322 -- 11951821 CAGGTTTTCCGCCAAAATCAAAAACCTACCGAGACCCAACGTTTTGTGGCGGGGCGTTTTTGCAC CTTGATTTCAAAAGGGGCATTTTTTGCGTCCCCAATAATCAGCATGTTTGAAAACCAAAACGATT AATTGCGCAATGGTCATTTAGACTTTTTTCAAATTTTCAGGTGTGTCTCTCCTCGAGAACAATGT ATCAAATCCGAGTTGTGTTGTATGAGATGCAAAACGACGAACTGATATACCTGAAGGAAACGAAA TTCGACGAAATGATATTCATCACTTGCACTGAATATCGTGGACAAGTCAATCGTGAATTGAAGAA GAGTATGAATCGTTTCTCAAGAAAAAGAAAGTATGAAATCAGTGGAACAAAGTGCCAGCGTTCGA AACGTCCAGCAAAACTTCCTGTCGAATCTCTAGATGAGAAGGAACTAAAAAATGCTGAAAAGGGA ATCATGAGTTTGCTTGAATCATCACCTTCGTCACCATCGTACCTT Right flanking sequence: Indices 11951840 -- 11952339 TCTCCACAATCAATACCATCTTCTATTTATGACTCTCTCTACCCATCGTCTCCAGAAGAATATCA GATGGTTCATACTTTTCCACAAACAGACCAATTATCTCCTAGTTTTCAAACTTCGCCCACAGTCC ATTATGATTTTTATAATCAGCAATATTATGACAATTCATTTCATGAAAACTATTTCCAGTCATAC AATCGGTTATAACTTTCGATTTATGCTTATGTCTAGATTTATCCGGTTTCAAATTACTAACCTGT TTTTCTTTTTTATCACAACTAACAAGCTCACGTTTTATCATTCTTGAAATTTTTTCAATAAATAA TGAAAATAAAATCAAAAGTGTAGAATTTGTTCTTAAAGGCGCATGAATTCATTCCAATGGGTCTC GTCGGGAGAAAAAGTTTATGGTAGCGCGTCTTGGTGCTCGGATTTTTTAATTATTTTTTTTCCAT TTTAAAAATATTTTATGCTCTATGTTTGGTTATGGAAGCGACCAC Found at i:11952482 original size:6 final size:6 Alignment explanation
Indices: 11952473--11952486 Score: 28 Period size: 6 Copynumber: 2.3 Consensus size: 6 11952463 ATCGAAAGAG 11952473 AAACAA AAACAA AA 1 AAACAA AAACAA AA 11952487 CTGGTATTCA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 8 1.00 ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00 Consensus pattern (6 bp): AAACAA Left flanking sequence: Indices 11951973 -- 11952472 ATGATTTTTATAATCAGCAATATTATGACAATTCATTTCATGAAAACTATTTCCAGTCATACAAT CGGTTATAACTTTCGATTTATGCTTATGTCTAGATTTATCCGGTTTCAAATTACTAACCTGTTTT TCTTTTTTATCACAACTAACAAGCTCACGTTTTATCATTCTTGAAATTTTTTCAATAAATAATGA AAATAAAATCAAAAGTGTAGAATTTGTTCTTAAAGGCGCATGAATTCATTCCAATGGGTCTCGTC GGGAGAAAAAGTTTATGGTAGCGCGTCTTGGTGCTCGGATTTTTTAATTATTTTTTTTCCATTTT AAAAATATTTTATGCTCTATGTTTGGTTATGGAAGCGACCACCGAAAAAGCCACATTCTTCAAAA ATTTCTGTCAAATCTCTGGGGGAGAAATAAAATTTAAAAATCGGTTGTCTTATTCTGAAGATTAT TTACGAAGAATCAAAGATGTCGATCAGTAAAACAAATCGAAAGAG Right flanking sequence: Indices 11952487 -- 11952986 CTGGTATTCAAAATTCGTTGAATGAGATTTTTGACGCGAATTTAGCGAGACACTGTCTCGATTCT TTCTCAGATGACGTCGATTGACCCTGCTTCTTTTGTTTTGTTGCTATGCAGATCGTATGTCCTAT GCAATAGCACCACACAATATGGGCGAAGATCAATGACACTCGTCCCACTCTTCTTTTTTCCTTCT TCAAATAGGCGGAGCATCTTTTCTCTATTTTTCCCCCGAATGTTGCCTCTATTTCTCTCTTTCTC TAAATATCTATTTGCCAGTCACCTCCTCCTCCTCCTCCATGAAACGCTATCTTTTGCTTGCAGTT TCATCGGTCTCGCCCACCGATGATGGTTGCGCGTTGTCCTGTAAACAGTTTTGTGTTGGGCTCCT CTAGTTTTGAATAGTTATGGCGCCCGCGTCCCCAGGACGAGCTTTTCGTGGCCTAGAAGCGTTTG CCTACTCGCGGGCGGTGCCACATTTTTTTTAGGAAAAAAGGTTTT Found at i:11952776 original size:3 final size:3 Alignment explanation
Indices: 11952768--11952784 Score: 34 Period size: 3 Copynumber: 5.7 Consensus size: 3 11952758 TTGCCAGTCA 11952768 CCT CCT CCT CCT CCT CC 1 CCT CCT CCT CCT CCT CC 11952785 ATGAAACGCT Statistics Matches: 14, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 14 1.00 ACGTcount: A:0.00, C:0.71, G:0.00, T:0.29 Consensus pattern (3 bp): CCT Left flanking sequence: Indices 11952268 -- 11952767 CGGATTTTTTAATTATTTTTTTTCCATTTTAAAAATATTTTATGCTCTATGTTTGGTTATGGAAG CGACCACCGAAAAAGCCACATTCTTCAAAAATTTCTGTCAAATCTCTGGGGGAGAAATAAAATTT AAAAATCGGTTGTCTTATTCTGAAGATTATTTACGAAGAATCAAAGATGTCGATCAGTAAAACAA ATCGAAAGAGAAACAAAAACAAAACTGGTATTCAAAATTCGTTGAATGAGATTTTTGACGCGAAT TTAGCGAGACACTGTCTCGATTCTTTCTCAGATGACGTCGATTGACCCTGCTTCTTTTGTTTTGT TGCTATGCAGATCGTATGTCCTATGCAATAGCACCACACAATATGGGCGAAGATCAATGACACTC GTCCCACTCTTCTTTTTTCCTTCTTCAAATAGGCGGAGCATCTTTTCTCTATTTTTCCCCCGAAT GTTGCCTCTATTTCTCTCTTTCTCTAAATATCTATTTGCCAGTCA Right flanking sequence: Indices 11952785 -- 11953284 ATGAAACGCTATCTTTTGCTTGCAGTTTCATCGGTCTCGCCCACCGATGATGGTTGCGCGTTGTC CTGTAAACAGTTTTGTGTTGGGCTCCTCTAGTTTTGAATAGTTATGGCGCCCGCGTCCCCAGGAC GAGCTTTTCGTGGCCTAGAAGCGTTTGCCTACTCGCGGGCGGTGCCACATTTTTTTTAGGAAAAA AGGTTTTGATGCCTCTGCCAATTTTTTTTGATTTAAATATTTTTAAACGAGCTATAACTTAAATA ATTTCAAACTGCCGCTGAAAATTATTAAAGGCGCATGGATTTCGTGACGAGACCTCCTGGCATTT TCCTTACTTTTCGATTCCGCCCGGATCTTTTCCTCCTTTTTGCACTTTGGCTTCTTATGTAAAAT CTCTTATTTGTTTAAATTTTAATTACAAAATATTTTATTTTCAGGTAATGTTGAGCACTCTTTCC AGAGGCGCCCGCTCGGTCGCTGTCCGAAGCTATTCGGCCGCTACT Found at i:11956441 original size:6 final size:6 Alignment explanation
Indices: 11956427--11956442 Score: 25 Period size: 6 Copynumber: 2.7 Consensus size: 6 11956417 CTGCTTCTCT * 11956427 TCTCAC TCTCGC TCTC 1 TCTCAC TCTCAC TCTC 11956443 TCATCCTCAA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 6 9 1.00 ACGTcount: A:0.06, C:0.50, G:0.06, T:0.38 Consensus pattern (6 bp): TCTCAC Left flanking sequence: Indices 11955927 -- 11956426 TCGAAGTGTACGCAAATGTTTGAGGGAAATATTTAGAATTGGAGATTTTTTTGAATTTTTGCAGT TACAGAGAAATTTTGGAATGTGCATATCGTGTAGTTTCACAGATTTTAATAGCATACATTTTCAA GGCGCACGGATTTATTCAGACGGGTCTCGTCGCGCCGAAAAGTTTATGGTAGCCTTCTAAAAATT CAAAAAGACTACCATAAACTTACACTTTTATAATATTTTGGTCTGTGTTTGTTCCCATGAAGTTT CAGAAAAGGCGAACCAAAATAAATTATAAAATTTTAAATTTCAAAAGCTCAATAAAAATCCATAT AAGCCTGGGTGGCCATCATCTTCATCATCATCTGACGATTTTTCGTTGCATTTTTCATCATCTTC TCACTGCCAAGTTCATTCAATTCCACACCGCTCGTTTCGTCGTCGACAGTCGACACTGCACCGCA ACATAAAAAAGCGTTGGCTGATGGTCTGATCTTCTCTGCTTCTCT Right flanking sequence: Indices 11956443 -- 11956942 TCATCCTCAACGATTAGAGACCCACGTGGGTGAGAGTCGCAGAGATATTTGCGGAAACCGATGTC ATGGCGCGACGAAAAGAGAATCGTCTCGTTTTTTCTCGCTTTTGCACGTATAACAAGTCGAGGAC AAAGAAAATGTGTTGGGTGGGGTGACATCTGAAGTCAGATGATGACCGGGAGATGATTGGGGGAT TCCCCTTAAATCATAGGATCATGTTTTGGCTCGAGGTCAGCTATCAGGAGGGAGCTCAGGGCCAC GTGGTATTTTTGTTATGAGGAAGTTCGTCCTCTATTAAAATACAATAGGTTAATATTAAGCTGGG GGTCAGCGATTAAGTCATTAATTCTGAAACCGAGATGCAAGAGCGCTCCAACGCCAAACGAAATC GCTCCGCCCCCAAACGTTGAGTCTCGTTAGGTATTTCGTCGACTTTATTATTATTGGCTTTTTCG TCGTGAGACCCATGGTGCCATACAAAATATTATATTCAAAAGTAA Found at i:11958298 original size:6 final size:6 Alignment explanation
Indices: 11958287--11958300 Score: 28 Period size: 6 Copynumber: 2.3 Consensus size: 6 11958277 TGTTCGAACG 11958287 TTATTT TTATTT TT 1 TTATTT TTATTT TT 11958301 TATAATGTCG Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 8 1.00 ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86 Consensus pattern (6 bp): TTATTT Left flanking sequence: Indices 11957787 -- 11958286 ATTGAATCGCTTGACGAACGTCTCGCATAAGATCCAGTTGATGTTTGATGTTGTGAACTGATACT AGATGACATCCTACCGTTTCCTGGAAAATTATTGAGATTTAATTAAATTTAGCTAAGAACATTCT CAAATTTGTTCAAAATGGATCTATTGAGACTTGAATTTTTTTTAAAATAAAATTCGACATCAAAT AGTATTATTGAAATGTCCAAAACTTTGCAAAAAATCTGCAAAAGTCTAACTTTTGTAGGGTGCGT TTATGAAACTTTTTTAAACGTATTTTGTCAGGACTACGGTAGGCCCGATAATGACGGGATAACAG GTAAGTAACTATTGGAAATTGTGTTTAATTTTGCAAATGGAGACATATTTTTGTGATGCTTTTTT CTCTATTATGTGTAACAGAGAGAGATTTTTTATTGATTTTTATGGTATTTACTTTGACAAAAGTT TTTTTTTGGTTTCATGGTTTTGACAAAAAAAATTGTGTTCGAACG Right flanking sequence: Indices 11958301 -- 11958800 TATAATGTCGTTTCTAAAAAGTGGTCTGAATATTTTCAACGTTTTACGGCAAAATCTAATTACGT TTTCAGCTGTAAATCATTACAGTTTTGCAAATAAACGGAAACATGGAAAATTTTGAATTTTTTAA ATCAGTAAGTTGAAAAATACATTATTTTGAAAAAAAGCTCACTTTTCCAACAATCGAATGAATAT ATGCTCTCGTATAGTTCTTGCATGTATTACATTCACATTTCTTATCAATCGGCAAAAAATCTTCC TTATATCGTTTCTGATTCAATTGCATCAATCCACCTCTTCTGACCATTGCTGTTCCAAATCTTGC AGTTCTTGTTGGATATACACAATCAAACATATCAGCTCCCAAAAATGAACAGATTACTAAATCAA CTGGAAATCCAACTCCCATCACATAACGAGGAAGATGAGGGGGTAAAGCTGCACAGCATGCTGCC ACAACTCTCCAGAAATGATCCTTTTCTTCTCCTCCAGATAATCCT Found at i:11961525 original size:5 final size:5 Alignment explanation
Indices: 11961515--11961528 Score: 28 Period size: 5 Copynumber: 2.8 Consensus size: 5 11961505 TCTGCAAGGA 11961515 AAATT AAATT AAAT 1 AAATT AAATT AAAT 11961529 AGGTTGAATA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 9 1.00 ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36 Consensus pattern (5 bp): AAATT Left flanking sequence: Indices 11961015 -- 11961514 CCAGCAGGCAAAATAGATGCTACATGCATTGAAAGAGTTTCTGGAATTTTCACAAGAAAATGGAG AGTTGGAACAGCAACATAGTCGGCATAACCATGACTGCACATCTCATCAGTTGGCCATACGATTA CTTTATCTCCAATAGTCAGATCATAGTCACCAGGTGTGCATTCAGCGCCGAATGACTCAACAATT CCGGAAACTTCATATCCTGCAATAACGGATTTCGAAAATGTTATTTTCATTAGTTCAAGCCAAAT TAATCTAAATTTCAAACCTGGAAACAAGCTGGTATCTTTGATTCCGTTGGTAATTCTTGCTTGCT TCGTGTTGGAAACTTCTCTATCAGTAAGGCAAACTCCTGCATAACAAACTTTAACGCGTGCTCCC TTTGGTGGGACATCTGGGATTGGCTCCTCGTCGAAAAACTTCACTTCCCGAAGATCCTTTGGAGA TCCCAAAGAAATTCTTCGGTTTGTTGCTGGCATTTTCTGCAAGGA Right flanking sequence: Indices 11961529 -- 11962028 AGGTTGAATAAACACTTCAATATCAATAAATTTGTTAACAAAGAATAAACCATCAAAGTGAGAGC ATGGGTCACGTGTGTGTTTTTTGAAGAGACACAACTTTTTAGAGAAAAATCAATAGAATCAACAT TGTAAACACTTGGAGAGAAATAAAATATTAGTGTTTTCAGTTTAAATGATAGAAAAATTGGTTCA ATCACTTGAGACATTAAACTTTGTTGAGAAACAACGTGCCGAAAACAAAAAATCCGATTGAAAAA CGGAAAGTGCGCCTAGTCACGATAACGGGGTCAAGAATGGCTTTGCGCACTTTGCGTGCCTTTTG GCGGAATTTTAAATACTAGTTTTTAATAAAGAAAACTTTTTTGCATTTTTCCGGCAAAATTACAG TTACGATTATTATGAAAGAATCTACTTGACTTACAATTAGAATTAGAGATTCAAATTAACTATTG ATGTTTTGAAAGCTCTATCAACTTAGGCTTTTTGAGAATAAGCTT Found at i:11961964 original size:6 final size:6 Alignment explanation
Indices: 11961949--11961965 Score: 27 Period size: 6 Copynumber: 2.8 Consensus size: 6 11961939 TCTACTTGAC * 11961949 TTACAA TTAGAA TTAGA 1 TTAGAA TTAGAA TTAGA 11961966 GATTCAAATT Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 6 10 1.00 ACGTcount: A:0.47, C:0.06, G:0.12, T:0.35 Consensus pattern (6 bp): TTAGAA Left flanking sequence: Indices 11961449 -- 11961948 TTCCCGAAGATCCTTTGGAGATCCCAAAGAAATTCTTCGGTTTGTTGCTGGCATTTTCTGCAAGG AAAATTAAATTAAATAGGTTGAATAAACACTTCAATATCAATAAATTTGTTAACAAAGAATAAAC CATCAAAGTGAGAGCATGGGTCACGTGTGTGTTTTTTGAAGAGACACAACTTTTTAGAGAAAAAT CAATAGAATCAACATTGTAAACACTTGGAGAGAAATAAAATATTAGTGTTTTCAGTTTAAATGAT AGAAAAATTGGTTCAATCACTTGAGACATTAAACTTTGTTGAGAAACAACGTGCCGAAAACAAAA AATCCGATTGAAAAACGGAAAGTGCGCCTAGTCACGATAACGGGGTCAAGAATGGCTTTGCGCAC TTTGCGTGCCTTTTGGCGGAATTTTAAATACTAGTTTTTAATAAAGAAAACTTTTTTGCATTTTT CCGGCAAAATTACAGTTACGATTATTATGAAAGAATCTACTTGAC Right flanking sequence: Indices 11961966 -- 11962465 GATTCAAATTAACTATTGATGTTTTGAAAGCTCTATCAACTTAGGCTTTTTGAGAATAAGCTTTT TAAGTAACCGGAACAACAACTAACTGACATAAACTTTGTGAAATGGAAAACGAAAATATTGCAGA TGAAAAATAACAGTGGGAGAGTAACGAGACGCAGGACCCTACAGATGCCGAAGCATCTATTCGTC CCTCAATACATGTGCTTTTCACGTGCACACAAACGAATTTCATCATGACTTCTAGGGGAGAATGA GAGTAGAAAAAAATCTCGAATATTTTCCAAAAAATTGAAACATTTTTCAAAAAAAAAGTTCAAAA AAAATAATTTGAAATATCTCCAAAAAAATCCAATATTTTGCAAAAAAATAATTTGAAATTTTTCC ATAAAAAAGTTCGATAATAAAATAGTTTGAGTACATCGAAAATGAGGAAACATCAATTTGTGGTT CGACGTTGTGAACATTTGAAATCAATAGATCATACACATTTTAAA Found at i:11966054 original size:5 final size:5 Alignment explanation
Indices: 11966044--11966056 Score: 26 Period size: 5 Copynumber: 2.6 Consensus size: 5 11966034 CAGAGGATAC 11966044 TTGAA TTGAA TTG 1 TTGAA TTGAA TTG 11966057 TTTCTGAAAT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 8 1.00 ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46 Consensus pattern (5 bp): TTGAA Left flanking sequence: Indices 11965544 -- 11966043 AATTAAATTACATAGGAATAGGTTTCTAGGCCACAATTATACATTTGATATACGGGTATTGATGT TAAGATTTTTCGAAAATTGCATTCCACGTCACTTTCCTTTTTCTTTATAATACGTCTGAAAAAAT AGTTTTATAAATCCAGGAGCCATTGTATAAATAAATTACCTCAAATGTCAAGAATTCATCCTTCT TACTTCTCTTCTTTGACCTCTTCTTTGATGCTTGACGTGGCTTTACAATTTCCTTAGATTTTGGG ATTATTGGCATCATCACAGTTTCGTGAGACGGGGTTTCAAAGAATGGGCGGTACACCAACTTCCA GAACTCTTCCAAATCTTCAGACTCTTTTTCAGGTAGATGTTGCTGAATTTATCTCATTATTCGAA TAAAAAAAATTTGAAGAAACTTACATGTGCAAAATTCCTTTGTTCTTCACTCATTTCCTTTTCAA TTCGATTCCACGAACGTAGATGAAGTTGGCGATGCCAGAGGATAC Right flanking sequence: Indices 11966057 -- 11966556 TTTCTGAAATTTTTTGTTGAATTTCTAATTTCAATAAAAAAAACTTACTTCCTTCTCAAACTTTT CAAAGTGATGCCACATCTTCAGGTATGAATAATAAGCGAAACCAAATGGAGATACAATTACGAAG AAAAGTATGAAAAACTGGATTAACTGAAATGCAAATTTTTTTCCTAACACTAACATTTCCGGGTC TTACATCGTAGAAATAGTAATATTCAAGATCATTTTCAGGACTCGGAAAGGGTCTGAAGAATGCA GATACGGCGAATATAATCGAAAAAGCTGGTGCAGTTGTCCATCTCCATTTCCAGATGGGCCACGT GTAAGCTCGACTCCATTGGTCATTGGATGGCTGTCCCATAAGTTCATGAATATCTCCATAGATTG TGTCTAAACCATATAATTCGAGGACAATAAATAGTTCTGCAGTTATGAATATTCCGGTTGCAACT GTTTGAATATCTTGAATCATTGTCAGGTACAATGGCCCACTCTTT Found at