TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_V Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 20922231 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:10532751 original size:8 final size:8 Alignment explanation
Indices: 10532738--10532756 Score: 31 Period size: 8 Copynumber: 2.4 Consensus size: 8 10532728 CGTTTTATAG 10532738 AAAAATTC 1 AAAAATTC * 10532746 AAAAATTG 1 AAAAATTC 10532754 AAA 1 AAA 10532757 TGTTTTTTCC Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.68, C:0.05, G:0.05, T:0.21 Consensus pattern (8 bp): AAAAATTC Left flanking sequence: Indices 10532238 -- 10532737 CAAACCGTGTTCCGATTAATACCTTCCAATTACCGAAGTTGATCTATCTTTCATTTTTTTCTTTT TTCTTTTATCGTTGCACTAGTTGCCCACCTATATACGCAAGTACGGTGCTTGACACCGTTGCTTT CCATCTTTTCAATCGCACTTTTCCCGAAAAGATTATCTTATTTCCTTTTTCTCTGCGCCCAGTAA TACCTAGTGTTCATTTCATAGGTCAAATTTTGAAAAAAAGATAAGGTAATCGACATCAACAATCA TAAAATGTTTCAGAAAGAGGATCTTGCTACATGGATGCAAATTTCAATGAGTGGTCAATTTGATG ATACAGCATTAGAGGAATGGAGTACAAATGGTAAAGAACCTGAGATCTGTGAGAAATCTCCAAAA GCTGATGGAGTTACTACGATTATGGAGAGAGCTCTATGTCCATGGGATAGCAGGTAGTAATTTAA TGTTTCATTATTTTCCGACGTTTGATGTGTTGAGACGTTTTATAG Right flanking sequence: Indices 10532757 -- 10533256 TGTTTTTTCCAGAGTCAACTACCAAGAGAGCCGAGAACCTAAATTGATTGCTGAATCAGTTTGTC TATGCCGTAAGAGCCGTGGTTCTACAGGAGCTTTCTGTATGCCAATTGTTCGAAAAGTTCCAATT CTCCGACGTGTCTCTTGTGATCGTTCAACAGGTTTATGGAATTATGTAAGATCAACTGAGCTAAT AACTGTTGGATGTCATTCTGTATTGCCAAGAACTCAAAGAGCAGCACGTCTTGCCCATTTATCAT CTTCTCGTATTATTGTTTAATCATTTTTGGGCTTTATTTATTTTTATATTATATATTTTTACTTT GTTTTATTCTCATTTCTTGTCATTTCTCGTTGTCATTTTCTAATTACGGTTTAATTATGTTGTCT TTCAAATAATCCAATTTACGGGTGTTCTTCAAAACCTTATTCAAACTTTCAATAAAACTTCCAAT TTATTTTCATTCATAATTGTATCGAAAAAGGTTTCTTTGATGGAA Found at i:10535830 original size:8 final size:8 Alignment explanation
Indices: 10535817--10535832 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 10535807 GCTAGGATTG 10535817 ATAAAATT 1 ATAAAATT 10535825 ATAAAATT 1 ATAAAATT 10535833 TGTTCATTTG Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38 Consensus pattern (8 bp): ATAAAATT Left flanking sequence: Indices 10535317 -- 10535816 CCAAATAGTTTGAAATTCTTTAGGATCAACACTTGACTGTTGAAATATCTGAAGAGAAGACACAA GTGCTAGAATAAGAGCAAGACGCATGTCGATGGAAGGACAATGAAAATAGAGCAATCTGAATGAA GTTGAGTAGTAATATGAAAGAATCTGCATTTGACACATCAATTTTTTCATTCTATCCAATTATCT AGTAAATTATACAAATGATGGAAATGATGAATCCGTAAATAATATTTTGGTGCGATTTAGACAAA TATAACAGCGAGAATAGGGGGAAAACGATTGGTTGGGTATATTCTGAATCTTGATGGGAGTGTTT GTAGGTGAATTTGACAGAAAATACTATTTTCGCAAAAGAGCGGATAAAACAATTAACCTTAAATG ATTGATGAAGAAATATAGATATAACTTAACAAACAAGTGGAAGATTTTGGTATGATGAGAAAGAA AATTGGCACAAATTTCGTTTTCCAAATGAAACAATGCTAGGATTG Right flanking sequence: Indices 10535833 -- 10536332 TGTTCATTTGGGGAGAGGCTCCGTTTTAAATTTGGACGAGCTGGTTTAATGAATTAGATAAGAGC AACGGGATAAAAGTGAGGAAAGTGTACTTTTTTAAAGTTTGGGAATAGAGTAGAAGCCATGAGAG TTACACATGCTTGATGTCACGTTGTGTCAGAATTTTCTGGGCCAGCGTAGTAACTGTATGTTCAG GAACACGCAAATCAGTTGGCAACAGTCCATTTGCTGTTACTTTATCCAGAATGCTCTTGAGAGTG ACCATGTCTTCTTCTTGTTTGAAGTCTTCCGCAGCAACAGCCTCATCGAGGAATTGATTTATAAC AGTCTTCACTCGGGACACCCATGCTTCCTCGGCTTCTTTTCGATGAATATTGACTTCTGGTGCAG CAGGGAAACATACAACCACCATCGTCATATTATCCCGACTTCCTTTCACAAGGCATTCGTCGAGA ACATCGTCGCACACCTGAATAATTTTGCAATTATTTAAGTTTCTA Found at i:10537771 original size:7 final size:7 Alignment explanation
Indices: 10537759--10537772 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 10537749 GTTAGTTTTG 10537759 TCGGTTT 1 TCGGTTT 10537766 TCGGTTT 1 TCGGTTT 10537773 GTCGAGAAAC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.00, C:0.14, G:0.29, T:0.57 Consensus pattern (7 bp): TCGGTTT Left flanking sequence: Indices 10537259 -- 10537758 TGCTCGTTTTACTGATTTCATCAAAACTCAAGAATCCTTTCTTGATTCCCTTTTCGAGCAGTTTT AGTGTACTGTCTGTGAGAACTCCGTTGTTTTCCTCCAAAGTTTTGGTCATCTCACGAAACTCTTC GCTTGAAATGAGGTGTTCAAGAAGCTGCGACGATGCTCGATTGGCGATGTGGTGTCCAGCATGTC CATCGAAAACGGCAAAGAATGACCAATCCTTGTAGGGGGAGGATTGAGACATTATAGCCTGTAAC GAAGCAATTTTTCATAGATTAACTCAATTAAAAGTCTAACCTCAGCAATGTGTGAATCTTCCATA CATATTCTCCAGCCCTGCATAGACGACATTCCATATCTGATTCCCTAAAAATTGTTTTTAAATTC ATATCCGGAAAGAAAAAATATATTTAAAATTTTGAGTCACATATGATTTAACTGCATACCCAGAT GGTTCTCAGAAACTCACATTTCCTTCTCCATGGACGTTAGTTTTG Right flanking sequence: Indices 10537773 -- 10538272 GTCGAGAAACGCTCCCATCGTCTTCGCGTCGACTTCTACTAAACCCGCACTGGTAACTCGCCAAA CACGAAGCTCGTCGCTGCTACTGCTTCGAGGCACCACCGGAATGGGCTGGCACTCTGAAAATAAA TTAACTGTGGAGAGAAAGGTTGACGCTGCCGTCGCAACAGCCGAACAGGTTAACGCAGAAACAAA AAAGAAGCGGCCACGAAGCATTATAGCTTTTCGCTTCAAAAAACAAACCGACTCATGCATTGATT ACTCGTGACGAATTATGTGGAATTGAAAGAATATACATGGGTATTGGTGAGAAAAACCATGAGAG AAAATAGTGTTCACGGTTGAGATACGGAGATGGAGAGAGCGGGAAAGCAGAGAAACTAACAATTA CCGCTGGCAGAACACACGTGAAGTCATCGAATTTCAAGTTAACTTTTTGATAGAAAGACAAACAT GACATCATTTTTTTTTGTATATTTTACATTAAAATTCAATGACGG Found at i:10538824 original size:7 final size:7 Alignment explanation
Indices: 10538812--10538825 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 10538802 AGTTATTGGT 10538812 CGGAGGA 1 CGGAGGA 10538819 CGGAGGA 1 CGGAGGA 10538826 AAGTGATAAC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.14, G:0.57, T:0.00 Consensus pattern (7 bp): CGGAGGA Left flanking sequence: Indices 10538312 -- 10538811 ATTATCTTTCAGAGAACACTGATTCATAAAGGTTAAGTTCAAACACAATAAGATTTCGGCACATT ATCCAAGACCCATGTATATTCCTAAAACTAAATATCTTTACCTTGGTCCGAGGGAGTTCCGAAAA TAGATAGCGAAGCAATCGTGGACGCAGTTTGCCGAATTTCCGGAGCAAATGATTCGTTGAGATTT CCGTGAGTCTTCGGTTCAGCAGAAGACGCGATTTGCAAATCTGCACGTGAAATCGTCATTCTTCT CGGGGGAAAAAATATATCAAAAGACGAAAACAGGACAACGAAGAAGATGACGACGATATATTCAA ATACGCACTACTGTTCCTTTCCACCACCGACTTCCCGAGTAGTGGGCGGATCAAATTCAATGGGT TGGTTTTTAGAGTTCGATTTAACGTCTTGCGACTTTTGAATGTACACAATTTATTTCTGGTCTTT ATGGACAGCAAGGGTAGCAAATCAACTTTGTACAAAGTTATTGGT Right flanking sequence: Indices 10538826 -- 10539325 AAGTGATAACTACTCTTCAGAAAAGACCGTGAAACTCGTGCTTTTAAAAAAGAGTGACCTGCCTA GAGAGACTGCTGACGTGCCAGATACATTATTTCTCTCACGTACAGAAATTATCTCATTTCGAAGA AGTTGGAAATCATGAAAAAAAATTGAGGAGAGTAGAAGAAAATCACGTGGATAATATGACGTTAA ATTAGATAAAGCTATTTGTGTTCTTTTTCGAGTAAAAAAATGAAAAAAGCAACGAATCAGCGGAG CCACAGGAACTTACATTCTTGTGTAGAAATGAAAAACTTTCTTTCTTATCAGTAAAAATATTACG GCAAAAATGTATTGTATCGCCGATTTCGTTGAGAACTACTGTTCTACTTTTAATTTTTGACAAAT AAAAATAGGCTAACTGGGTTAATAAATCATTAGTGAGCTTTTCCAGTTTTTGAAATAATTTAAAT TTTGCTAAATCGCCGATTTTGTATTAACGTATAATTTTGATAGCA Found at i:10539497 original size:9 final size:9 Alignment explanation
Indices: 10539480--10539498 Score: 31 Period size: 9 Copynumber: 2.1 Consensus size: 9 10539470 ATTCCCGTCC * 10539480 TTCTTTCTT 1 TTCTGTCTT 10539489 TTCTGTCTT 1 TTCTGTCTT 10539498 T 1 T 10539499 AACGTCGTCG Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.00, C:0.21, G:0.05, T:0.74 Consensus pattern (9 bp): TTCTGTCTT Left flanking sequence: Indices 10538980 -- 10539479 GAGGAGAGTAGAAGAAAATCACGTGGATAATATGACGTTAAATTAGATAAAGCTATTTGTGTTCT TTTTCGAGTAAAAAAATGAAAAAAGCAACGAATCAGCGGAGCCACAGGAACTTACATTCTTGTGT AGAAATGAAAAACTTTCTTTCTTATCAGTAAAAATATTACGGCAAAAATGTATTGTATCGCCGAT TTCGTTGAGAACTACTGTTCTACTTTTAATTTTTGACAAATAAAAATAGGCTAACTGGGTTAATA AATCATTAGTGAGCTTTTCCAGTTTTTGAAATAATTTAAATTTTGCTAAATCGCCGATTTTGTAT TAACGTATAATTTTGATAGCAACAGAGAGTGCGAGGAAAGTTTTTCATAATCGGAAAGTTAAAAT GTGAGAAAGAGGTATGACGAAATCAGATTTGTGGTGTCTTCCCGCGCCATCACCGTCTGTTTTCC AAAAAGGAAAAGTGTTTCGAGTGACGGCTCCTTTTATTCCCGTCC Right flanking sequence: Indices 10539499 -- 10539998 AACGTCGTCGTCCACATGGACAGGGAGAAAAGAGGCAAACTGAGAGAGGAAAACAATCGAAAGAT GCGGTCGAATCGAGGGCACACACGCACACTTGGAGAAACGAACGAGTGCAGTAGAAAAATTGAAA CGCGTCAATACAAGCGCACAAAAAGCGCGTCAGCAAGCGATAGTTAACGCAATTGGAAAATAGAG GCGATTCAAATGCATTTTTATCGAACGAAATGAAAGCTTTTTTCTCATTAGCTTCCTAAATCTCA ATAGGGGTTAATTTAAAAATACATACGTCAGAAAAAATCTTATTTGTGAAACTGTAAAAAATGCA TACAAAAAAGGTCACATCGGAATCAGGGGTGTGCGGCAAATGGAAAAAATTGCCGAGCTCGGCAA ATCGACAATTGCTGGTTTTTCAAAATTTGCCGAGCTCGGCAAATTCGGCAAATCTCTTTTTTCAA TATTTGCCGAGCACGGCAAATTCGGCAAATTTGCCAAGCTCGGCA Found at i:10539938 original size:9 final size:9 Alignment explanation
Indices: 10539924--10539941 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 10539914 TTTGCCGAGC 10539924 TCGGCAAAT 1 TCGGCAAAT 10539933 TCGGCAAAT 1 TCGGCAAAT 10539942 CTCTTTTTTC Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.33, C:0.22, G:0.22, T:0.22 Consensus pattern (9 bp): TCGGCAAAT Left flanking sequence: Indices 10539424 -- 10539923 GTCTGTTTTCCAAAAAGGAAAAGTGTTTCGAGTGACGGCTCCTTTTATTCCCGTCCTTCTTTCTT TTCTGTCTTTAACGTCGTCGTCCACATGGACAGGGAGAAAAGAGGCAAACTGAGAGAGGAAAACA ATCGAAAGATGCGGTCGAATCGAGGGCACACACGCACACTTGGAGAAACGAACGAGTGCAGTAGA AAAATTGAAACGCGTCAATACAAGCGCACAAAAAGCGCGTCAGCAAGCGATAGTTAACGCAATTG GAAAATAGAGGCGATTCAAATGCATTTTTATCGAACGAAATGAAAGCTTTTTTCTCATTAGCTTC CTAAATCTCAATAGGGGTTAATTTAAAAATACATACGTCAGAAAAAATCTTATTTGTGAAACTGT AAAAAATGCATACAAAAAAGGTCACATCGGAATCAGGGGTGTGCGGCAAATGGAAAAAATTGCCG AGCTCGGCAAATCGACAATTGCTGGTTTTTCAAAATTTGCCGAGC Right flanking sequence: Indices 10539942 -- 10540441 CTCTTTTTTCAATATTTGCCGAGCACGGCAAATTCGGCAAATTTGCCAAGCTCGGCAAATTCGGC AAATTCGGCAAATTTGCCGTGCTTAACAAACTCGGAAAAATTTGATATTTTTTATGTTTTTTGGA GCACCAAAACTACTGAATTCTTAACACACATCTGGTTTCTGAATAAGTTCCGCGTAGTATGTCTG TTTAAGCATCAAAATAGCTCAATTTTGTGTCATTTTACTAAATTTTTGGCTAAAAAATCAATAGT TTTAGTCAAAATTGTACTGTCAAATTTTTGACGTGTGCGGCAAATTTCGAAATTTGCCGAGCTCG GCAAATTCGGCAAATCTACTTTTTTGAAAATTGCCGAGCTCGGCAAATCGGCAATTGCTGGTTTT TTAAAATTTGCCGAACTCGGCAAATCGGTAAATTTGCCGAATTCGGCAAATCGGTAAATTTGCCG AGCTCGGCAAGTCGGCAATTTTCGGCAAATCGGCAAATTTGCCGC Found at i:10539981 original size:9 final size:9 Alignment explanation
Indices: 10539967--10540020 Score: 80 Period size: 9 Copynumber: 6.0 Consensus size: 9 10539957 TTGCCGAGCA 10539967 CGGCAAATT 1 CGGCAAATT 10539976 CGGCAAATT 1 CGGCAAATT * * ** 10539985 TGCCAAGCT 1 CGGCAAATT 10539994 CGGCAAATT 1 CGGCAAATT 10540003 CGGCAAATT 1 CGGCAAATT 10540012 CGGCAAATT 1 CGGCAAATT 10540021 TGCCGTGCTT Statistics Matches: 37, Mismatches: 8, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 9 37 1.00 ACGTcount: A:0.31, C:0.24, G:0.22, T:0.22 Consensus pattern (9 bp): CGGCAAATT Left flanking sequence: Indices 10539467 -- 10539966 TTTATTCCCGTCCTTCTTTCTTTTCTGTCTTTAACGTCGTCGTCCACATGGACAGGGAGAAAAGA GGCAAACTGAGAGAGGAAAACAATCGAAAGATGCGGTCGAATCGAGGGCACACACGCACACTTGG AGAAACGAACGAGTGCAGTAGAAAAATTGAAACGCGTCAATACAAGCGCACAAAAAGCGCGTCAG CAAGCGATAGTTAACGCAATTGGAAAATAGAGGCGATTCAAATGCATTTTTATCGAACGAAATGA AAGCTTTTTTCTCATTAGCTTCCTAAATCTCAATAGGGGTTAATTTAAAAATACATACGTCAGAA AAAATCTTATTTGTGAAACTGTAAAAAATGCATACAAAAAAGGTCACATCGGAATCAGGGGTGTG CGGCAAATGGAAAAAATTGCCGAGCTCGGCAAATCGACAATTGCTGGTTTTTCAAAATTTGCCGA GCTCGGCAAATTCGGCAAATCTCTTTTTTCAATATTTGCCGAGCA Right flanking sequence: Indices 10540021 -- 10540520 TGCCGTGCTTAACAAACTCGGAAAAATTTGATATTTTTTATGTTTTTTGGAGCACCAAAACTACT GAATTCTTAACACACATCTGGTTTCTGAATAAGTTCCGCGTAGTATGTCTGTTTAAGCATCAAAA TAGCTCAATTTTGTGTCATTTTACTAAATTTTTGGCTAAAAAATCAATAGTTTTAGTCAAAATTG TACTGTCAAATTTTTGACGTGTGCGGCAAATTTCGAAATTTGCCGAGCTCGGCAAATTCGGCAAA TCTACTTTTTTGAAAATTGCCGAGCTCGGCAAATCGGCAATTGCTGGTTTTTTAAAATTTGCCGA ACTCGGCAAATCGGTAAATTTGCCGAATTCGGCAAATCGGTAAATTTGCCGAGCTCGGCAAGTCG GCAATTTTCGGCAAATCGGCAAATTTGCCGCACACCCCTGATCGGAATTGAAACGAATCAATTGA AGAAATCTAGAAATAATTCTAGAAGTTTTGGGCGAGATGCAAATG Found at i:10540278 original size:9 final size:9 Alignment explanation
Indices: 10540264--10540281 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 10540254 TTTGCCGAGC 10540264 TCGGCAAAT 1 TCGGCAAAT 10540273 TCGGCAAAT 1 TCGGCAAAT 10540282 CTACTTTTTT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.33, C:0.22, G:0.22, T:0.22 Consensus pattern (9 bp): TCGGCAAAT Left flanking sequence: Indices 10539764 -- 10540263 GGTTAATTTAAAAATACATACGTCAGAAAAAATCTTATTTGTGAAACTGTAAAAAATGCATACAA AAAAGGTCACATCGGAATCAGGGGTGTGCGGCAAATGGAAAAAATTGCCGAGCTCGGCAAATCGA CAATTGCTGGTTTTTCAAAATTTGCCGAGCTCGGCAAATTCGGCAAATCTCTTTTTTCAATATTT GCCGAGCACGGCAAATTCGGCAAATTTGCCAAGCTCGGCAAATTCGGCAAATTCGGCAAATTTGC CGTGCTTAACAAACTCGGAAAAATTTGATATTTTTTATGTTTTTTGGAGCACCAAAACTACTGAA TTCTTAACACACATCTGGTTTCTGAATAAGTTCCGCGTAGTATGTCTGTTTAAGCATCAAAATAG CTCAATTTTGTGTCATTTTACTAAATTTTTGGCTAAAAAATCAATAGTTTTAGTCAAAATTGTAC TGTCAAATTTTTGACGTGTGCGGCAAATTTCGAAATTTGCCGAGC Right flanking sequence: Indices 10540282 -- 10540781 CTACTTTTTTGAAAATTGCCGAGCTCGGCAAATCGGCAATTGCTGGTTTTTTAAAATTTGCCGAA CTCGGCAAATCGGTAAATTTGCCGAATTCGGCAAATCGGTAAATTTGCCGAGCTCGGCAAGTCGG CAATTTTCGGCAAATCGGCAAATTTGCCGCACACCCCTGATCGGAATTGAAACGAATCAATTGAA GAAATCTAGAAATAATTCTAGAAGTTTTGGGCGAGATGCAAATGCGCTCCATTCGGAAACGACAT ACTAGCGGAAGTTTAAATTTTAGTTTTTTGTGCATTTCTCGTACAACGTTAATTTTGCAGTTTTA CTGGAAAAATCATTCATCCAATAAATAGTTATTATTTATTACCAATAAATTTCACGGAGTTCTGG CCTCCGGCAATGTTATCAAAGACGTTTTGCATGTTTTTCCTCCGACTTATATCTTCAGAGGGATA AAAAAGCAGCAAAAAAGTATTTTTCATCCGTACATGGTCAAGAAA Found at i:10541078 original size:8 final size:8 Alignment explanation
Indices: 10541062--10541080 Score: 31 Period size: 8 Copynumber: 2.4 Consensus size: 8 10541052 CTAGAAATTT * 10541062 GAATTGCC 1 GAATCGCC 10541070 GAATCGCC 1 GAATCGCC 10541078 GAA 1 GAA 10541081 AAACAGTTCC Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.32, C:0.26, G:0.26, T:0.16 Consensus pattern (8 bp): GAATCGCC Left flanking sequence: Indices 10540562 -- 10541061 TAGTTTTTTGTGCATTTCTCGTACAACGTTAATTTTGCAGTTTTACTGGAAAAATCATTCATCCA ATAAATAGTTATTATTTATTACCAATAAATTTCACGGAGTTCTGGCCTCCGGCAATGTTATCAAA GACGTTTTGCATGTTTTTCCTCCGACTTATATCTTCAGAGGGATAAAAAAGCAGCAAAAAAGTAT TTTTCATCCGTACATGGTCAAGAAAACCAGGAATGGTTGATAGTATGCCTCAAAACAATCAAAAG TTTTATTAAAGTTAGTTCGAGTTCCAAATTATACTCGTTATTTTTCCCGTAAAAGACAAGCGTCA CAAACTTTCCAGTGGTACTGTAGGATTACTGTAGTTTTGGGAAAAATGAGCTTTTGCTCTAGAAA CTTTGGAAAAATTCGAGAAACTCTGAAGAATTCTGAAAAGTTCTGAAAAATGCTGGAAAATTTGA GAAACCAGGAATGGTTGGTAGCATCTTTAAAAACTCTAGAAATTT Right flanking sequence: Indices 10541081 -- 10541580 AAACAGTTCCGGTAGCGATTAAGCAGACGAAAACATCCAACATCACCATGGAGAAGATGTTCCTT GATTGATGTCAAATGATGAGACAATTCTTGTCGTTCGGTAGCAGCCACTGTTGAACAGTCATGGA ATTTGCTTCAGGTAGATCACTTGATATCTACGTCAAAAAGAGTATTCTGAGCATCTCCAAGAAGT TAGAGATTATAATGCAAACAACCTGGGGGATCCAGTATCTTCACGATTTTCCAGCCATTTACAGA GGTATTGCAGCAAGAAATTTCTTATGGTAGTGAAAATTTTGAGATTTGATAATTATTCGTTTGAC TCGAGCAATGAAGAAAACTACAAAACTGATAATGAGGAACATTATTGATGATGTCTTTGGGAGTC TTGTTGGATTTAATAATATTATCCAAAAGTGGATAAAGTTGGTTTAGAAGTGACGCCGCTTTGAT GAGCTTTATTTTGAGAAGATCAAAGAAGTATAATTTGATTTTGGT Found at i:10543057 original size:7 final size:7 Alignment explanation
Indices: 10543045--10543061 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 10543035 TATTTTATCT 10543045 ATTGTTA 1 ATTGTTA * 10543052 ATTGTTT 1 ATTGTTA 10543059 ATT 1 ATT 10543062 ATGATTTTCC Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.24, C:0.00, G:0.12, T:0.65 Consensus pattern (7 bp): ATTGTTA Left flanking sequence: Indices 10542545 -- 10543044 TGTTGATGTCTTTTACATCAAAAAGACCAATTTTCATCAATGATGATAGTGATAAGATACATTCC TAATGATCTGGAAACATAACTTTAATATTGTACTTCCAATTCATGAATTATCACACAAACTCCAT TCTATCATAGAAACGTGATCTTACACATTCTCGAATATATTTTTTGTGAATCATTTGAATGTATC TTCAGATGTCTGCAATGCATTTTTCTATTCCCAGATTGAAAGACAATCTGGCTCCTTGTTGCACT ACACCACAGATCGAAAAAGAAGAGAGCAGCAGTAGCAGTGATGAAAAATCGGTGTAACCGAAATA CTTCCGTTGACGGTGTCTCGATTACAAAGATGCCATTTGGTCACGAAAACGTCGCCACTTTTTCC AGAAGACTTTTAAAGTGCTTCTGAGGAATGCCTCGAAAAAGAAGATCTGAAGACGTCGACGCTAT GGTTATTGCAACTTCTCCTATCAAGGTAACAACTATATTTTATCT Right flanking sequence: Indices 10543062 -- 10543561 ATGATTTTCCAGATAAAAGTTGAACAATTCATTGAAGAAACTTCAAGTATGGATGTATATATTCC AGCACTTGACAGATTTGCTGAGGATACGTCAATGCTAGGTTTCAGATATCTGCACACAAGATATA AAACATGGTTTCGGTACGTTTATGGTTGTTACGTTAAGTAAATTGTGATTTTTGAAAACTTTTCA TGATGTTAAATATTAATTTCGACTATAAATTTATGATAACTTGAAATTTCGTTTTGGAGTAGGTG TGCCCGACAAATTTCAAAATATTTGGTGCTCGACCTATACGATCTTGTTTTCACATAAAAAACCA AACTCTATCAGTGCAATTTCTAAAAAAAATTTCAGAGGCGGCGACTGGTGACCGGCTTATGATCT TAAAGGGGGAGTAGAGTTTGTGGGGAAATATATGTTTCTGACTCTAATTGTGCTCCTGATACCGA ATATCGATGTGAAAAAAATTTAAAAAATTTCCCTGATTTTATATT Found at i:10543543 original size:9 final size:9 Alignment explanation
Indices: 10543529--10543546 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 10543519 ATCGATGTGA 10543529 AAAAAATTT 1 AAAAAATTT 10543538 AAAAAATTT 1 AAAAAATTT 10543547 CCCTGATTTT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33 Consensus pattern (9 bp): AAAAAATTT Left flanking sequence: Indices 10543029 -- 10543528 CAACTATATTTTATCTATTGTTAATTGTTTATTATGATTTTCCAGATAAAAGTTGAACAATTCAT TGAAGAAACTTCAAGTATGGATGTATATATTCCAGCACTTGACAGATTTGCTGAGGATACGTCAA TGCTAGGTTTCAGATATCTGCACACAAGATATAAAACATGGTTTCGGTACGTTTATGGTTGTTAC GTTAAGTAAATTGTGATTTTTGAAAACTTTTCATGATGTTAAATATTAATTTCGACTATAAATTT ATGATAACTTGAAATTTCGTTTTGGAGTAGGTGTGCCCGACAAATTTCAAAATATTTGGTGCTCG ACCTATACGATCTTGTTTTCACATAAAAAACCAAACTCTATCAGTGCAATTTCTAAAAAAAATTT CAGAGGCGGCGACTGGTGACCGGCTTATGATCTTAAAGGGGGAGTAGAGTTTGTGGGGAAATATA TGTTTCTGACTCTAATTGTGCTCCTGATACCGAATATCGATGTGA Right flanking sequence: Indices 10543547 -- 10544046 CCCTGATTTTATATTAATTTTTAAAATCCGCAAATCCATTGGATGCCTATATGAGAGATTTCAAA CGCAAGATTTTCCCGCCAGAGACGCCCCGCCCACGAAACCGTGCCGCACGTGTGGGTTTACGAGA TTAATTTTTTCCTTCTATTTTTATTTAATTTTATGCCGATTTTTTCCATTTTTTCGCTGTTTTAT ATCGAAAATGTTGTTATTTCGCGTTAATTTATGCCTTTTTATTGATAAAAATCAACAAAATTCCA TTGAAGTTCCATTTTCAGCACAACATCGACGGAAAACAAGGAAAATTACGGCGACACGACGTTTC TAGGAAAAGTGAGCATTTCATTTAAAAAACATTTTCAAAAAACAATGTAAAAGTGAAAAGCATTC CGTTCGCTAAAAAATTAGGCCTAAAACATCTTTAAAAAATCAACAGTTTGTCGATTTAGTCGGTA AATTCCAATTTTCATCCAAATACTCATCATATTTCCTTTACAAAT Found at i:10544167 original size:11 final size:10 Alignment explanation
Indices: 10544142--10544166 Score: 43 Period size: 10 Copynumber: 2.5 Consensus size: 10 10544132 CAAACTTCAA 10544142 TTTTTGTTTT 1 TTTTTGTTTT * 10544152 TTTTTGTTAT 1 TTTTTGTTTT 10544162 TTTTT 1 TTTTT 10544167 TTCCCAGAAA Statistics Matches: 14, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 10 14 1.00 ACGTcount: A:0.04, C:0.00, G:0.08, T:0.88 Consensus pattern (10 bp): TTTTTGTTTT Left flanking sequence: Indices 10543642 -- 10544141 CCACGAAACCGTGCCGCACGTGTGGGTTTACGAGATTAATTTTTTCCTTCTATTTTTATTTAATT TTATGCCGATTTTTTCCATTTTTTCGCTGTTTTATATCGAAAATGTTGTTATTTCGCGTTAATTT ATGCCTTTTTATTGATAAAAATCAACAAAATTCCATTGAAGTTCCATTTTCAGCACAACATCGAC GGAAAACAAGGAAAATTACGGCGACACGACGTTTCTAGGAAAAGTGAGCATTTCATTTAAAAAAC ATTTTCAAAAAACAATGTAAAAGTGAAAAGCATTCCGTTCGCTAAAAAATTAGGCCTAAAACATC TTTAAAAAATCAACAGTTTGTCGATTTAGTCGGTAAATTCCAATTTTCATCCAAATACTCATCAT ATTTCCTTTACAAATCACAATAACGAAAGTTCTCCACATTAATACAAACATTTAACATTCCAGAT ATCCGGAATACGTTGATTCGTAGTGCACCCAAGGACAAACTTCAA Right flanking sequence: Indices 10544167 -- 10544666 TTCCCAGAAATGTGATTTTTTATAAATTTTATTGAAAATAAATAGTTTTATAATATATATTTTAT AATACACACGGAATAATGATACATTTATTGTCCATGGTTGCTTCCACCTCGTTTCGCGTCGATTT TGTGTTGAAAATGGAACTTCAATGGAATTTTGTTGATTTTTATCAATAAAAAAGCATAAATTAAC GCTAAATAACAACATTTTCGATATAAAACAGCGAAAAAATGGAAAAAATCGGCATAAAATTAAAT AAAAATAGAAGGAAAAAATTAATCTCGTAAACCCACACGTGCGGCACGGTTTCGTGGGCGGGGCG TCTCTGGCGGGAAAATCTTGCGTTTGAAATCTCTCATATAGGCATCCAATGGATTTGCGGATTTT AAAAATTAATATAAAATCAGGGAAATTTTTTAAATTTTTTTCACATCGATATTCGGTATCAGGAG CACAATTAGAGTCAGAAACATATATTTCCCCACAAACTCTACTCC Found at i:10544591 original size:9 final size:9 Alignment explanation
Indices: 10544579--10544596 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 10544569 AAAATCAGGG 10544579 AAATTTTTT 1 AAATTTTTT 10544588 AAATTTTTT 1 AAATTTTTT 10544597 TCACATCGAT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67 Consensus pattern (9 bp): AAATTTTTT Left flanking sequence: Indices 10544079 -- 10544578 ACATTTAACATTCCAGATATCCGGAATACGTTGATTCGTAGTGCACCCAAGGACAAACTTCAATT TTTGTTTTTTTTTGTTATTTTTTTTCCCAGAAATGTGATTTTTTATAAATTTTATTGAAAATAAA TAGTTTTATAATATATATTTTATAATACACACGGAATAATGATACATTTATTGTCCATGGTTGCT TCCACCTCGTTTCGCGTCGATTTTGTGTTGAAAATGGAACTTCAATGGAATTTTGTTGATTTTTA TCAATAAAAAAGCATAAATTAACGCTAAATAACAACATTTTCGATATAAAACAGCGAAAAAATGG AAAAAATCGGCATAAAATTAAATAAAAATAGAAGGAAAAAATTAATCTCGTAAACCCACACGTGC GGCACGGTTTCGTGGGCGGGGCGTCTCTGGCGGGAAAATCTTGCGTTTGAAATCTCTCATATAGG CATCCAATGGATTTGCGGATTTTAAAAATTAATATAAAATCAGGG Right flanking sequence: Indices 10544597 -- 10545096 TCACATCGATATTCGGTATCAGGAGCACAATTAGAGTCAGAAACATATATTTCCCCACAAACTCT ACTCCCCCTTTAAATGAGTTTTTATTTAAAAATAAATACTGAAACATATTTAATATGCTTTTCTT CAACGAATTGGTCGCTTGCGATCTATTGCAGAATAGAAACAAGAAAAAGTATAAATAAATCCAGT GCACCAAGTTCGTCTGAAAAGTGCAGGTGAACACTCATTTTCTGCATAAATTCATTAAGGAAAAA AAGAGTACGTCAGGTTTCAAATCAAAACACATATCCAAATCATGTCTGTCACTAAAACACAGACT CATATATTCATATAATTCTCGAATTTCTATTTCAATGCAAAAATATATATTTTTTCGAATTTGAG CACACTTTGTTCACGTGTCAATTTCATTTTAAAATACCACCCTCTTCGACTAACCCACCATTTCC GCTACGAATGTCTTAAATTTCATAAGTGCGTCACGATACATCTTC Found at i:10547137 original size:10 final size:10 Alignment explanation
Indices: 10547124--10547144 Score: 42 Period size: 10 Copynumber: 2.1 Consensus size: 10 10547114 AGAGTTGAAG 10547124 AGATTGCAGA 1 AGATTGCAGA 10547134 AGATTGCAGA 1 AGATTGCAGA 10547144 A 1 A 10547145 TTGTATGTCA Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 11 1.00 ACGTcount: A:0.43, C:0.10, G:0.29, T:0.19 Consensus pattern (10 bp): AGATTGCAGA Left flanking sequence: Indices 10546624 -- 10547123 TTCCGATAATTTCCATGATGTCAAGTGTCTCTCTTTGGATGGTCGTACCTATGAAAGTTTTATCA ATCAATTTTACTCTTATGAACCAACATGGGAAAGAATAACCACGCAAGTCTACTCTGAATATCTG AAAAAAAAAATTCTTATTTTCAGGTATCTTCAACATTCTTTGGCCAGAGAACTCAACAGCACTGC TCTTTGTCTAGGACTATTTTTGACTGAAAAAGGAGAAATTGATGATACAGTAACACCGGTTGTAA ACATGACGCTGGCTTCAATTTCTTTGTTACAACTCGGACAAATTGAAAATTCACTCGGAAAGGCA AACTTTAATTATGGATTGACAATGATGCATGAAAGCACTCGAAGAGTTGTGCTAGGATTGGGTAA GCATGCAAAAGCAAAGAGTTCTATTCCTCATATACTTTCAGCCCATCCACTGATTACTGAAGTAA GAGACTGTGTTACCAAAATGTATGAAAATCTGGAGAGAGTTGAAG Right flanking sequence: Indices 10547145 -- 10547644 TTGTATGTCAAACTAATGCATGGATTTGAAGAATAATAATTATTTTTAGATTTTCAAGAATCGCT ACACTCCACTTATTGAAGCATCTAACGTCCATACAAAAACAAATCCAAATTCGGAATCATTTAAA CTTTACACAGAAGCCATGAAGAAAGTGTTGGCTAAACTGCAAATATTAAAAACAAGAGTTCGAAT GAGTGAATGGAAAGATTTTAAAATTGATTTAAAAGAATTTGAATCATCGTATCGAGAAATAGCAA AAGACCATGTGGAAATTGAAGAAATGCTAAAATTAAGAAAAACTATGGTTACGGATATTCCAGCA TTGGCGAATGAATTATCAGAAACCTTTTTGGCAGCAACAGAAAGTAGAAGAAAGTTTGCAGTATT GACAGGAATTGCTGCAGATGAAAGTTTCAGTGATAAATTTTCAAATTTCTCGAAATGTTTGGATG AACTTCACGAAAAAGCGCCAAATTTAAAGGCAAGAATAATTACTG Found at i:10547695 original size:8 final size:8 Alignment explanation
Indices: 10547678--10547699 Score: 37 Period size: 8 Copynumber: 2.8 Consensus size: 8 10547668 AAAAATTACA 10547678 TTTATTTG 1 TTTATTTG * 10547686 TTTGTTTG 1 TTTATTTG 10547694 TTTATT 1 TTTATT 10547700 CGAAATTTGA Statistics Matches: 12, Mismatches: 2, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 8 12 1.00 ACGTcount: A:0.09, C:0.00, G:0.14, T:0.77 Consensus pattern (8 bp): TTTATTTG Left flanking sequence: Indices 10547178 -- 10547677 TAATAATTATTTTTAGATTTTCAAGAATCGCTACACTCCACTTATTGAAGCATCTAACGTCCATA CAAAAACAAATCCAAATTCGGAATCATTTAAACTTTACACAGAAGCCATGAAGAAAGTGTTGGCT AAACTGCAAATATTAAAAACAAGAGTTCGAATGAGTGAATGGAAAGATTTTAAAATTGATTTAAA AGAATTTGAATCATCGTATCGAGAAATAGCAAAAGACCATGTGGAAATTGAAGAAATGCTAAAAT TAAGAAAAACTATGGTTACGGATATTCCAGCATTGGCGAATGAATTATCAGAAACCTTTTTGGCA GCAACAGAAAGTAGAAGAAAGTTTGCAGTATTGACAGGAATTGCTGCAGATGAAAGTTTCAGTGA TAAATTTTCAAATTTCTCGAAATGTTTGGATGAACTTCACGAAAAAGCGCCAAATTTAAAGGCAA GAATAATTACTGACTTTGAAATATTCAAAATACCTAAAAATTACA Right flanking sequence: Indices 10547700 -- 10548199 CGAAATTTGATAAATAGTAACAAAATGTAATACATAGAAGATCAACGGGGAAAATCGAATAATAC ATAAAATAAGAAAATATTTCAAAGTTTAAAAATCAAGATCTGATTTTAATTTCTATATTTTAAAG AAAACTCGATTCATCCGTGGCGAATGGCTTTCAAGACTTCGAAACCAAGTTTTGATGGCCCAGTC ATATTCTCCAACTCCTCAATATGATGTGTAAGTCTTTTAAGCGTAATCTGAGTTGTGAGTAGGGT GAGCTCAGTGATGGCAAACGACGCCGCCGTGACGTCTTGTTCTAATTGAGTGTATGCGTGCAAAT AAACATTAAACTTGGTACTTTCAACGGAACAAACTTTTTTCAGAGTAAATCTTCTTCACATCAAG TTCTATTTTGCACACTTTAAACAAGAGACTATTCTTCAAGAAAGATCCTACAACTTATTTTTACT TCTTGGTGAGTTTTACTCGATGTGCTTGTAACTTTGAAAGTTTTC Found at i:10550833 original size:9 final size:9 Alignment explanation
Indices: 10550821--10550839 Score: 31 Period size: 9 Copynumber: 2.1 Consensus size: 9 10550811 TTCGTACGTT 10550821 ATCACATAG 1 ATCACATAG * 10550830 ATCACCTAG 1 ATCACATAG 10550839 A 1 A 10550840 AACATTCATA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.42, C:0.26, G:0.11, T:0.21 Consensus pattern (9 bp): ATCACATAG Left flanking sequence: Indices 10550321 -- 10550820 GCTGTTGGAAGAGAAAGCATCATATATAGAACTTTTTCAAAATTTGAGAGAAACGGCAAGTCTGA AAATTGTCACATATTATTTTACTGTAAAAACGGACAGGAGCCTACCATAATTCTCAAGTATTAAG TGAGCTATGTATATAGGAATCACACAAACTGCAGGGACAAGTGTCTGAATCGTCAAAGCAAGATC AAACTTCTTGGCTTGAGCAGCAGTTTTATCAGTAAATAAATGTTTTAAACTGTTGAGTTTAATTT GTATTAGTCTGGAAACACATTGGTAAGTATTTCTTCGAAACTCAAATTTATTACCTAATAAACAC AATACTCATGATTGGTGGGACGAAAATGCTTATCATATTCAAATTTGTTGCTAACCAGCTCCAAA AATGTTTTTGATATCCAGTGATATCCGCATAGTACCGGAAATCATATTGTGTTGAATGAAACTTC CTGGTCTCTGAAGCAACCTCAAGAGATTCGTCTGGTTCGTACGTT Right flanking sequence: Indices 10550840 -- 10551339 AACATTCATATTTCCATTCTAGATCAATCACGAAAAGCAAAACTCACCCCCACAATTAAAGATAG AAGGTAAGAGCTTAAAAGAATCATTCTGATTTGATTTTTAGTTATGTTTTTCATATTAATATTTG TTACTTTTGTATATTTGTAAAACAATGTAGCAGGAATTGCAAAGGACGAGGCATCAAAGACTAAC TGAATTTTGAATATTTGTAAAAAATAACAATTACAGGACACTTACCTGGAAAAAATCAAAACTGA AAAAGCAAGCATTTTTATGAGTGTGTCTACAAAACCCGCTAAAAAGATATGCTGACGATTCTGGA TTGTTCACAGGTCTGAAGGAACAGTGTTAGCTAAAAATTAATATTATCGTACAACTAACCTGACT TGTGTGAAGACAACTATTATGCACATGAAAAACTGTAAAGTTGAAGAATTGACAAGAAAGACACG AAAATCTTTGAATACTACGGGCGTTTTAAAAACAACTAAAAGCAC Found at i:10551297 original size:9 final size:9 Alignment explanation
Indices: 10551280--10551297 Score: 29 Period size: 9 Copynumber: 2.0 Consensus size: 9 10551270 TTGAAGAATT 10551280 GACAAGAAA 1 GACAAGAAA * 10551289 GACACGAAA 1 GACAAGAAA 10551298 ATCTTTGAAT Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 9 8 1.00 ACGTcount: A:0.61, C:0.17, G:0.22, T:0.00 Consensus pattern (9 bp): GACAAGAAA Left flanking sequence: Indices 10550780 -- 10551279 TCTCTGAAGCAACCTCAAGAGATTCGTCTGGTTCGTACGTTATCACATAGATCACCTAGAAACAT TCATATTTCCATTCTAGATCAATCACGAAAAGCAAAACTCACCCCCACAATTAAAGATAGAAGGT AAGAGCTTAAAAGAATCATTCTGATTTGATTTTTAGTTATGTTTTTCATATTAATATTTGTTACT TTTGTATATTTGTAAAACAATGTAGCAGGAATTGCAAAGGACGAGGCATCAAAGACTAACTGAAT TTTGAATATTTGTAAAAAATAACAATTACAGGACACTTACCTGGAAAAAATCAAAACTGAAAAAG CAAGCATTTTTATGAGTGTGTCTACAAAACCCGCTAAAAAGATATGCTGACGATTCTGGATTGTT CACAGGTCTGAAGGAACAGTGTTAGCTAAAAATTAATATTATCGTACAACTAACCTGACTTGTGT GAAGACAACTATTATGCACATGAAAAACTGTAAAGTTGAAGAATT Right flanking sequence: Indices 10551298 -- 10551797 ATCTTTGAATACTACGGGCGTTTTAAAAACAACTAAAAGCACGACGGAAGTTTGACTGAACATGG GTAAAACCAAAATAAACCCAAAAATAAATTGGAAATATGACAGTGTCGTAAAAGGTCTGAAATTA AAGTAACTGGCAATTACTTAAATGATAATCACAGATATTTTTCATATATGACAGGCAATGAAAGA TTGGCATTTTAGTATATTTTTAAAAGTTTATTTTAAAAAGCAATCTTCCAATTGATTTTTCCTCA TAAATACCTAACTAGGAGACTCACCATTGGTGGAAAAAGAAAAATTACTCACATTTGCTTCCATT GTCATAATACTAGAGTTGGCATTCTCATTGGATACATCCATGTGGTAGAAATTCTGAAATTCGTA ATAAGAATATTTTTGTGAAAAATATCCAAGAAGTAACGAGGATGTTTACAATCTGGTAGATTTTT CTCGATTCGGGGAAATATATACTCCCTGTGGTAATATATTACCTA Found at i:10553714 original size:7 final size:7 Alignment explanation
Indices: 10553702--10553716 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 10553692 TTCCTAAAGT 10553702 ATTTTAA 1 ATTTTAA 10553709 ATTTTAA 1 ATTTTAA 10553716 A 1 A 10553717 CCATAAACTA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53 Consensus pattern (7 bp): ATTTTAA Left flanking sequence: Indices 10553202 -- 10553701 AATTTTATAATAATTACATAACAATAGAAAAGTGCAATAGCTAAGAAAAGTGCAATAATAACATA ATAGCTGAGACTAGTTGGCAGAAAACACAAATAATAAAAATAAATTTAGAAGTAAATTACTACAT CAATTTTTTAAAAAATGGTGAAAAAGATACGTGACGAGCCTGTTCCTTAATAGTCTGGTAGTAAT TCTCCCTTATCTAATGGAAACACATCTAGTTCAGAGATGAATAAATTCTGCGAAAGTCTTCAATG ATAGCATTCCTAGAAGATTTTCAAGCTGTTAATGTGATGTAATATGAGCAATCAGGTCGATTCGT CCACAGTTCCAAGAAAATTCTCATTTTTCACAATACTAATTGGAACTGAGAGTTTCATGAAATTT AATGGAACTTAACAGGAAGATTTGAGTTAAATTCCCATTTAGAATATGTTTCCTTTATTTATTCC GACTTAGAAAACAACTTCCGTTATTGTTAAATTTTTTCCTAAAGT Right flanking sequence: Indices 10553717 -- 10554216 CCATAAACTATGATTCTACTGTATTTTTGTAATGCAGACTATAAATATCAAAGAAGTAAAATATT CATGATGTCAAGAACTAATCCAAAATAACAAAACAAAATTGTAAATTTTAAGCCCTGAAGACGAT TGTGTTCCTGATGAATTGAACAAATACGTTAATTTTTCAACAACTAGTGTTCTGACATATCGACC TCAGCCGATAACAAATTTGAGCCTGGAGCCAATCAGGTTTGTCCCAAAACGTGACTTATTGAAAC GAAAAATATTCAATCAATTTAGGTGTGCATATCAAACAAATAACGGCTTATCAAAGCAATTTTTC GAGGTAAGAAAATGTGGTAAATAAGTGAGTGAAAAAAATCAATTCAATTATTTCAGATTGAACCC AACGTTCCTATTCAAATTCCTCATTATAACTTTTTGGTTTCTTGCAAAAGAAATGAAAAAGAAGT GTTTGTGAAGCCATTCGTCAATTTTGGTGTAATACCAAAGGTTTG Found at i:10554270 original size:7 final size:7 Alignment explanation
Indices: 10554258--10554271 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 10554248 GGCATTCAAA 10554258 TTTTCAG 1 TTTTCAG 10554265 TTTTCAG 1 TTTTCAG 10554272 AAATTTGAAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.14, C:0.14, G:0.14, T:0.57 Consensus pattern (7 bp): TTTTCAG Left flanking sequence: Indices 10553758 -- 10554257 TAAATATCAAAGAAGTAAAATATTCATGATGTCAAGAACTAATCCAAAATAACAAAACAAAATTG TAAATTTTAAGCCCTGAAGACGATTGTGTTCCTGATGAATTGAACAAATACGTTAATTTTTCAAC AACTAGTGTTCTGACATATCGACCTCAGCCGATAACAAATTTGAGCCTGGAGCCAATCAGGTTTG TCCCAAAACGTGACTTATTGAAACGAAAAATATTCAATCAATTTAGGTGTGCATATCAAACAAAT AACGGCTTATCAAAGCAATTTTTCGAGGTAAGAAAATGTGGTAAATAAGTGAGTGAAAAAAATCA ATTCAATTATTTCAGATTGAACCCAACGTTCCTATTCAAATTCCTCATTATAACTTTTTGGTTTC TTGCAAAAGAAATGAAAAAGAAGTGTTTGTGAAGCCATTCGTCAATTTTGGTGTAATACCAAAGG TTTGTAGCAAACTTATTTTTATAATAGTATAATGTGGCATTCAAA Right flanking sequence: Indices 10554272 -- 10554771 AAATTTGAAAACAGTTTCAAATCTTGGTACTAATAAATCTTGAAAAACCTATTGAAGCAATTTTT CCAAAACATTTTTTATTTTTAAGGAAGTGCCAGGAGAATCTGTTGCTGTAATATTACTTCCATCT ATAAATCATATGCTTTTTACCAAGAAAATAATACGAACCAAAACTGTTATGCAAAAGAACGGTTT CAAATTTGCTCAAATGTTGAATATGGTAACATTTGACATCGAGAATATGTTTCTAATTATTAGAT TTCAGAAAGAAACCAAACCATTTCTGGATCTTCTTTTAGAACTTGGCATTTCTAGTGAAATTAGT GTATTTCAACAAGCAAAGAAACATAATTTTACTACTTTCTTTTCCGGACCCCAACAAATTCGGGA ATTAATCGATGTAGACTACGATACTATGGAACATAGAAATTATATTTCCAATAATCTTATTGATG AGAACTTTTGTCTTCAAGATGGAAGGGTTTCTTTTTTGTGAATTA Found at i:10555896 original size:7 final size:7 Alignment explanation
Indices: 10555880--10555897 Score: 29 Period size: 7 Copynumber: 2.6 Consensus size: 7 10555870 TTGATTTTTT * 10555880 CTTGTTA 1 CTTCTTA 10555887 CTTCTTA 1 CTTCTTA 10555894 CTTC 1 CTTC 10555898 GAACGTTTTT Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.11, C:0.28, G:0.06, T:0.56 Consensus pattern (7 bp): CTTCTTA Left flanking sequence: Indices 10555380 -- 10555879 ACAATGTAAAATCAAAAAATGGTAGACCAAAGGTAAATAGTAATAATTTCAATGCAATTTTAGTT TTCAAAAAATAAAGGGAGCGCGAAAATGCCTAATATGTAATGCCTAATATGATACATGTGGATTC CATTATAGATCGACAATTCTAGCATACGTGTAACACCTTCCGAATGCAATTTTGCATTAAATTGA AGGTTACATATTTGTACGGTACCCAATATTTTCTGATTCGTTAAAAATATGAGAACATTGAGCAC GCGAATAGACTCCAGGCAAGTAATAGTTTTTAAACATGCAAATTGTTTTCATAGAAATGATATGT TCATTCAAAGATTAGAAATTTGTTCTCTGAGAAAAAAGTTTCCAGAGAGAAATCAAACAAATAAT CTCTGAAAAAAGTTTGGATTGTGTTTCGAAGAACAAACAGAAAAATTGACAGAAAATTGAGTATA CCTTCCAATACTCATAATAATATTTTTCTATACATTTGATTTTTT Right flanking sequence: Indices 10555898 -- 10556397 GAACGTTTTTCTTGAATATACAAAATAAATTTGAAACCAATTTTTCAAAGAAAACTCAAAAACTG AACTTTAAAACTAAAAAGTGTTTACTGTATATTATTGTTTCAGAGAAGTAACAGATGAGCAATCT AAAAATCCATTTTTCGCAGTCAGACTTTCCGACACTTTAATGAAATCTCATAAGACAGAATCACA CTTTCTTCATTTAAACTTTCATAGGTAATTCATCAAAGTCTCTTAAAATTGAATCGATTCAATTT TCAGACTGTTAACTACTTCTAATTCTTATCATTTGATAATGAACTTACTTGATCCAAAAACATCA TTCAATCTTTCTCCATTTTCATTACAGTCAACAACAAGATCTTGCCAATCAGAAAACTTATCCGA CGAAATATGTCTTTGTATGAAACCGGTGAGAAAATGAAAACAAAAGCATTTATTGGTATAACAAT ATAAAATGTAATTTAGATTCCAGTTCCTGATTTCATAAATCCAGT Found at i:10557551 original size:9 final size:9 Alignment explanation
Indices: 10557535--10557553 Score: 31 Period size: 9 Copynumber: 2.1 Consensus size: 9 10557525 CTCCTGGACC 10557535 TCCACCCCA 1 TCCACCCCA * 10557544 TCCTCCCCA 1 TCCACCCCA 10557553 T 1 T 10557554 TGTCGTTTCA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.16, C:0.63, G:0.00, T:0.21 Consensus pattern (9 bp): TCCACCCCA Left flanking sequence: Indices 10557035 -- 10557534 AAATATTTAAACATTTATTTTTCAGCATTTGTGTTCTATAAAAATCAAAAAAAGGAGAATGAAAC ATCATAACGGGACGTTTGTGTCATTGAAAAGAGATCGAAACAAATGAGCAACAACTACTAAAAAT GATGGATATGTTCTTAATAAATAATGGCATTTTTCATCCCATAAAATTGTTCAATAATCCACCAA ATCCTGCGAGAGGTCCTTGCATCATTCCTTGACTTTGATGACTTTGTTGCAAAGCGTTCACATTT GCAGACATTCCAGAATTTCGACAATTATAGCTACTGATTGGGAGACCGATCAAGTTGATTCCAGA TGTTTGACACTAGAAAAACAATAGGATTAATTTTCAAATTATTAAAATTAAGTCTTACATTATAT TGATCTTGCTTTGCTGCAATATGGTTTCTATTCATATTTTTATTCCAATTTTTCTGTTGAAATCC AGGTTGTTGCCATCCTCCTGGACCCCCTCCCCATCCTCCTGGACC Right flanking sequence: Indices 10557554 -- 10558053 TGTCGTTTCACTCGGCTCTGAAAATTTTAGCATAAATAATTATTCAATTTTAATTTTTATTCGAA TTGGGCGTTGGAGAATTGTGTTCTCAAAAAAAAAAAAATAAAGAGGGAAATTTATTCTCACTAAA TAATCATGCTCAAATTTGGCAAGAACAATTAAATTAAATGAAAATATTTTCTAGAATTAAAAAAA TCTAACCTGAATTAATCCGCCGGATATAATCGAAACCAGGAACAAAAGTAAAATAATAATTCGAG TATTCATAATTTATCAGTGATTTGGGACACAGGACACGATCATCAATAATGCCTTCATTTTTATA CGGAAATCAAAACTCAACCTGACCGGCCTCCTATCCCCTTATTTGACAACCTGTTATGTTGGACG AGTGTAATATTTCAGATCGGATCGGGCGAACAGAACAAAAATCAAAATAAAAGTTACGTTGGAAT TGTAATGAATCGGCCAAACAGACCGTTTTCTTCATGACTTAATTG Found at i:10558397 original size:8 final size:8 Alignment explanation
Indices: 10558386--10558403 Score: 29 Period size: 8 Copynumber: 2.2 Consensus size: 8 10558376 AAAGTAAGTG 10558386 TTCATCTT 1 TTCATCTT * 10558394 TTCATGTT 1 TTCATCTT 10558402 TT 1 TT 10558404 AAAACATTAA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.11, C:0.17, G:0.06, T:0.67 Consensus pattern (8 bp): TTCATCTT Left flanking sequence: Indices 10557886 -- 10558385 CAAAACTCAACCTGACCGGCCTCCTATCCCCTTATTTGACAACCTGTTATGTTGGACGAGTGTAA TATTTCAGATCGGATCGGGCGAACAGAACAAAAATCAAAATAAAAGTTACGTTGGAATTGTAATG AATCGGCCAAACAGACCGTTTTCTTCATGACTTAATTGAGTTCCTGCAAGTGTCATTTTGTTTTT TCAAAGTTACACAAGACACAATTCGGAGATTTCGAATTCGTAGTAAATGACGAATTCTCGAAATG TCTTCATTGTTTTTCTTATGAGATGAACTTGATCAACATGTTTCTTAAATGGCCGTATCGTATTC ACTAGTAAAGGGAACAGCCTAACTTTAAAACTAATCATTTTTGGAAACAAATGAACCTGGAAGCT GGTTCGCCGGAATAATTTATCATACGCCTTGCTATCAGGGAAGATCTGAAAACTACACCGACTTA ATTGGAATTTAAAAAATGGGAATACATTTTGTAATAAAGTAAGTG Right flanking sequence: Indices 10558404 -- 10558903 AAAACATTAACCAAATTTTCGAGAGTCATAGTCCAATCTTGTTTGAAAATATTTGTGAGAACCCC GTAGTGCACTACATAAGGTTAAAACGGAATAAATGTTTTGCGCTCTCATATTCATTATTTTTCTC ATTTTGACTTTTCTATTTGATAGTAATAACTTTGAGTCAGTGAGAAACACTGCCTATGAATGCTT TTCTTGCTTTCTAATTTGAACACCTTTCAAGCCAAGTTCAAAACCGGTTGTGAATTATTTTCAAA CTTTATCTTGAAGATCTTCCAGAGATTTCTTGACTTTGCCCCAAACTAGCCTGTTAGATTAAATA CTACAGACAGCTTGAAGTTGGACTATCGTCAGTGGGGTAATACCTTAATCTAAACATATCCTGAT GAATAGATATAAATAAATAAATAAACATATAACATTCTAACATGTCCGAATATACCTAATAATGA TGAAAAAAATCTAAAACTTTTTTACAATCTTCCAAACAAAACCAA Found at i:10558825 original size:8 final size:8 Alignment explanation
Indices: 10558804--10558825 Score: 30 Period size: 8 Copynumber: 2.8 Consensus size: 8 10558794 GAATAGATAT * 10558804 AAATAAAT 1 AAATAAAC 10558812 AAATAAAC 1 AAATAAAC * 10558820 ATATAA 1 AAATAA 10558826 CATTCTAACA Statistics Matches: 12, Mismatches: 2, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 8 12 1.00 ACGTcount: A:0.73, C:0.05, G:0.00, T:0.23 Consensus pattern (8 bp): AAATAAAC Left flanking sequence: Indices 10558304 -- 10558803 TTGCTATCAGGGAAGATCTGAAAACTACACCGACTTAATTGGAATTTAAAAAATGGGAATACATT TTGTAATAAAGTAAGTGTTCATCTTTTCATGTTTTAAAACATTAACCAAATTTTCGAGAGTCATA GTCCAATCTTGTTTGAAAATATTTGTGAGAACCCCGTAGTGCACTACATAAGGTTAAAACGGAAT AAATGTTTTGCGCTCTCATATTCATTATTTTTCTCATTTTGACTTTTCTATTTGATAGTAATAAC TTTGAGTCAGTGAGAAACACTGCCTATGAATGCTTTTCTTGCTTTCTAATTTGAACACCTTTCAA GCCAAGTTCAAAACCGGTTGTGAATTATTTTCAAACTTTATCTTGAAGATCTTCCAGAGATTTCT TGACTTTGCCCCAAACTAGCCTGTTAGATTAAATACTACAGACAGCTTGAAGTTGGACTATCGTC AGTGGGGTAATACCTTAATCTAAACATATCCTGATGAATAGATAT Right flanking sequence: Indices 10558826 -- 10559325 CATTCTAACATGTCCGAATATACCTAATAATGATGAAAAAAATCTAAAACTTTTTTACAATCTTC CAAACAAAACCAATTCGGAAATGTGTTGAACATTTGAACTTTTGTTCCACTTCACACAGTCATTG TTTTGACCTATTCTAATTAAGCCAAACTTTGACGTCATCCAGATTTTACGTAGGTTTTTTGGTGT CTCGTCTCTTTTTTAAGACTTATTTCGTCAAATTCATTCCGAAAATTAAGTTGAGGCTAGTAATT TGTCAAACAGGTTCTTCTATCGGTCGATGAATGCAACAATCGAAATGTAAGTGGTAGATGATTGA AATGTTGAAATGATGAAGGTTGATTGATTGGGGTAATTGAAAAATTTACATATAAATGAAAAGAG ATGCTTTTTTGAATAATTAACGTACCAGACTTTAAAAAACATTATTTCTATACTTGTTTGTCTAA TAGTTTTCAAGATGGAAAATATTCGAGACCAAGTTTCGCTTTTTT Found at i:10558929 original size:8 final size:8 Alignment explanation
Indices: 10558916--10558934 Score: 31 Period size: 8 Copynumber: 2.4 Consensus size: 8 10558906 CGGAAATGTG 10558916 TTGAACAT 1 TTGAACAT * 10558924 TTGAACTT 1 TTGAACAT 10558932 TTG 1 TTG 10558935 TTCCACTTCA Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.26, C:0.11, G:0.16, T:0.47 Consensus pattern (8 bp): TTGAACAT Left flanking sequence: Indices 10558416 -- 10558915 AAATTTTCGAGAGTCATAGTCCAATCTTGTTTGAAAATATTTGTGAGAACCCCGTAGTGCACTAC ATAAGGTTAAAACGGAATAAATGTTTTGCGCTCTCATATTCATTATTTTTCTCATTTTGACTTTT CTATTTGATAGTAATAACTTTGAGTCAGTGAGAAACACTGCCTATGAATGCTTTTCTTGCTTTCT AATTTGAACACCTTTCAAGCCAAGTTCAAAACCGGTTGTGAATTATTTTCAAACTTTATCTTGAA GATCTTCCAGAGATTTCTTGACTTTGCCCCAAACTAGCCTGTTAGATTAAATACTACAGACAGCT TGAAGTTGGACTATCGTCAGTGGGGTAATACCTTAATCTAAACATATCCTGATGAATAGATATAA ATAAATAAATAAACATATAACATTCTAACATGTCCGAATATACCTAATAATGATGAAAAAAATCT AAAACTTTTTTACAATCTTCCAAACAAAACCAATTCGGAAATGTG Right flanking sequence: Indices 10558935 -- 10559434 TTCCACTTCACACAGTCATTGTTTTGACCTATTCTAATTAAGCCAAACTTTGACGTCATCCAGAT TTTACGTAGGTTTTTTGGTGTCTCGTCTCTTTTTTAAGACTTATTTCGTCAAATTCATTCCGAAA ATTAAGTTGAGGCTAGTAATTTGTCAAACAGGTTCTTCTATCGGTCGATGAATGCAACAATCGAA ATGTAAGTGGTAGATGATTGAAATGTTGAAATGATGAAGGTTGATTGATTGGGGTAATTGAAAAA TTTACATATAAATGAAAAGAGATGCTTTTTTGAATAATTAACGTACCAGACTTTAAAAAACATTA TTTCTATACTTGTTTGTCTAATAGTTTTCAAGATGGAAAATATTCGAGACCAAGTTTCGCTTTTT TTTAATTTGTGATTGCCGAAAACATATTTATGTATTATGTGTTCACTATTCAAGCTCAAAATATC ATACACTTCAAATTTGTTTCCGTTTCTGAAAAAAAATGTTTTCAA Found at i:10559160 original size:8 final size:8 Alignment explanation
Indices: 10559147--10559167 Score: 35 Period size: 8 Copynumber: 2.6 Consensus size: 8 10559137 TGGTAGATGA 10559147 TTGAAATG 1 TTGAAATG 10559155 TTGAAATG 1 TTGAAATG * 10559163 ATGAA 1 TTGAA 10559168 GGTTGATTGA Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 8 12 1.00 ACGTcount: A:0.43, C:0.00, G:0.24, T:0.33 Consensus pattern (8 bp): TTGAAATG Left flanking sequence: Indices 10558647 -- 10559146 TGTGAATTATTTTCAAACTTTATCTTGAAGATCTTCCAGAGATTTCTTGACTTTGCCCCAAACTA GCCTGTTAGATTAAATACTACAGACAGCTTGAAGTTGGACTATCGTCAGTGGGGTAATACCTTAA TCTAAACATATCCTGATGAATAGATATAAATAAATAAATAAACATATAACATTCTAACATGTCCG AATATACCTAATAATGATGAAAAAAATCTAAAACTTTTTTACAATCTTCCAAACAAAACCAATTC GGAAATGTGTTGAACATTTGAACTTTTGTTCCACTTCACACAGTCATTGTTTTGACCTATTCTAA TTAAGCCAAACTTTGACGTCATCCAGATTTTACGTAGGTTTTTTGGTGTCTCGTCTCTTTTTTAA GACTTATTTCGTCAAATTCATTCCGAAAATTAAGTTGAGGCTAGTAATTTGTCAAACAGGTTCTT CTATCGGTCGATGAATGCAACAATCGAAATGTAAGTGGTAGATGA Right flanking sequence: Indices 10559168 -- 10559667 GGTTGATTGATTGGGGTAATTGAAAAATTTACATATAAATGAAAAGAGATGCTTTTTTGAATAAT TAACGTACCAGACTTTAAAAAACATTATTTCTATACTTGTTTGTCTAATAGTTTTCAAGATGGAA AATATTCGAGACCAAGTTTCGCTTTTTTTTAATTTGTGATTGCCGAAAACATATTTATGTATTAT GTGTTCACTATTCAAGCTCAAAATATCATACACTTCAAATTTGTTTCCGTTTCTGAAAAAAAATG TTTTCAATAAAAATTGTTATAAGTGTACGGTTTTTCATAAATCGTCTAATAATCTTTTCTGACAT ATTGTATATTTTTTTAGATTTCAGAATATTTTTTAATGGAACAAGTTGGGACTAGAAGTTTCTGA AAAATAAATTTTACACTTGAAATCCAAAAAAATCATATACAATTCTAAGAATATCAATATAATTA CAAATTGTCTGAAGCTCTGAGGCTTAATTGTATAAAAAAGTGTCT Found at