TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_I Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 15080552 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:3021089 original size:10 final size:10 Alignment explanation
Indices: 3021061--3021090 Score: 39 Period size: 10 Copynumber: 3.0 Consensus size: 10 3021051 AAAAATCATA ** 3021061 AAAAATTTAG 1 AAAAATTTTT * 3021071 AAAATTTTTT 1 AAAAATTTTT 3021081 AAAAATTTTT 1 AAAAATTTTT 3021091 TACAGTTATA Statistics Matches: 16, Mismatches: 4, Indels: 0 0.80 0.20 0.00 Matches are distributed among these distances: 10 16 1.00 ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47 Consensus pattern (10 bp): AAAAATTTTT Left flanking sequence: Indices 3020561 -- 3021060 GAAAAAATTTATAAAATTTTTCTAAGTTTTTTATGATTTTTTTTTTTTGGTTTTTTTGAAAAAAT TGAAAAAGGGCCAAATTAAATTTGAATTCCCGCGCAAATGAGTGACGTCATTTTCGACATTTTTG CGTTTTATAGGAAAACTAATAGGTTTTACTTTATTTTTTCTTTGTTTTATCGTTTGAAACATAAT TTGCCAAGTTGTCAGGCATATTTCCGTAGACAAAAGTTATGATTTATTTTGAATAATCGATTTTT AGGCCAATTTCCGAGTTTCGGTAAGTTTCTCTTCAAAACTATCAAGTTTTCTTTACAAAAAAATG TCTGAAAAATTGACAAATTATGTTTCAAAATATAAAACAAAGAAAAAATAGGGAAAACCCAATTA GTTTGGCCGTAAAATGCAAAAATGTCAAAAATGACGTCACTCATTTGCGCGGTAATTCAAATTTA ATTCGGCCCTTTTTTTTCAATTTTTTCAAAATTAAAAAAATCATA Right flanking sequence: Indices 3021091 -- 3021590 TACAGTTATATTCGGTATATTGGGGCTGTATTCTGTCATTTAGGGCAAAAAACCCACAGACGCTA CTCCACCTTTAAATAGAAAACTTGAAAAGTTTGCAAATTTGGGAATTTAGCTGAAAATTATAGTT TTTTGAGAAAATTTCGGCCATTGTTGGCCGAATTTTGGAAATTCAGAATGTTTCATTAGAAAATT TGGCAGTTTTGGGCCATTTTTGTCTAAAATTTTATATATTTTTTCAGATCTGCAATGCTCGGAGT TCGAACAATCAATAATCGTGCCAAGCAGAACCGCAATCCGAATGAGTCGAAACGTGGCGGAAGAA GGAAATAATTTTTGAATTTGATTTTTTTTTGTTATTCTAATCCTCTTCCTTGTTACTTCTTGTTT CTGTTCTTTTTATTAATCTGCAAAGATTTGGAAAAAAAATTGATTTTTGTTATTTTTTTCCGGAA ATTTAATTTAGTTTCTTTTTGAACTTTGGTTAATTTCCAATTTTC Found at i:3022067 original size:7 final size:7 Alignment explanation
Indices: 3022055--3022069 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 3022045 ATTTGTCAAA 3022055 AAAAATT 1 AAAAATT 3022062 AAAAATT 1 AAAAATT 3022069 A 1 A 3022070 TTTTTTTCTC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27 Consensus pattern (7 bp): AAAAATT Left flanking sequence: Indices 3021555 -- 3022054 AGTTTCTTTTTGAACTTTGGTTAATTTCCAATTTTCTTTGCCTTTCTCTCGAAAATTCTTTTTTT TTTTTGTTAAAAATATTTAATTTTCATTTCAGCTTTTCCCCAGAAATGCCCCAATACTATTGTCA CAATTGTCGTGCCTCGTTTGACATTGACGAGTCTGCACAAATTGCATGTACCAGATGTCATGGAG AATTCGTTGAGATTGTCAATCGACCAGCTAGTGAGGATGCTTTGTGTTTTGTGGAACAAGAAAAA ATAATCAGAAAAATCAAAATTTTGCCGAAAAAACAAAAAAAATCAATTTTCGTCAAAAAAAAAAT CGAAAACCATTTTTTTTAATGCAAAAAAGTCAATTTTTACCAAAATATTCAGAAAAAATTAATTT TTGACGAAAATAATTACTTTTCCGAAAAACAACTTTAAAAAATCAAATTTTGTCAACAAAAAAAT CAACTTCCGAAAAAACAATAAATTTCTGAAATATTATTTGTCAAA Right flanking sequence: Indices 3022070 -- 3022569 TTTTTTTCTCGAACAAAAAACAATGGATTTTTCTTCCGAAAACAACAGAAAATTTAATTTTTGAC GAAAAAAACTTCTTTTCCGAAAAACAACTTTAAAAATTCCATTTTTTTCAAAAGAAAAAATTAAT TTTGTAAAAAAAACCAAAGAATCAATTTTTGTCAAAAAAAAATTAAAAACCGGTTTTTATCAGAA AACAAAAAAATTATTAAATAAATTAATTTTCATCAAAAAAAAAGCAGAAAAAAGCCAATTTTGCT GAAATATTTTTCGCCAAAAAAAAATCGTTTAAAAATCAATATTTGTAACAAAAAAAATCAATTTC TGTCAGAAAAATTATTTATTTTTATTTTAAAAAAAATCAATTTTTGCCCAATCAATTAGAAAAAC ATTGCCTATAAAATCGAAAAACATTGCCTATAAAATCAAGTTTTGTCAAAAAAAATTAATTTTTG CTAAAAAAAAAACCAAAATCATCAATTTTGCCAAAATGAACCGAT Found at i:3022646 original size:9 final size:9 Alignment explanation
Indices: 3022628--3022647 Score: 33 Period size: 9 Copynumber: 2.2 Consensus size: 9 3022618 CAATTTTTAC 3022628 AACAAAAAA 1 AACAAAAAA * 3022637 AACCAAAAA 1 AACAAAAAA 3022646 AA 1 AA 3022648 TCTATTTGCC Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00 Consensus pattern (9 bp): AACAAAAAA Left flanking sequence: Indices 3022128 -- 3022627 TTTTGACGAAAAAAACTTCTTTTCCGAAAAACAACTTTAAAAATTCCATTTTTTTCAAAAGAAAA AATTAATTTTGTAAAAAAAACCAAAGAATCAATTTTTGTCAAAAAAAAATTAAAAACCGGTTTTT ATCAGAAAACAAAAAAATTATTAAATAAATTAATTTTCATCAAAAAAAAAGCAGAAAAAAGCCAA TTTTGCTGAAATATTTTTCGCCAAAAAAAAATCGTTTAAAAATCAATATTTGTAACAAAAAAAAT CAATTTCTGTCAGAAAAATTATTTATTTTTATTTTAAAAAAAATCAATTTTTGCCCAATCAATTA GAAAAACATTGCCTATAAAATCGAAAAACATTGCCTATAAAATCAAGTTTTGTCAAAAAAAATTA ATTTTTGCTAAAAAAAAAACCAAAATCATCAATTTTGCCAAAATGAACCGATTATATAAAATCAG TTTTTCTCGAAAAATATTTTTTAAATTAAAACATTCAATTTTTAC Right flanking sequence: Indices 3022648 -- 3023147 TCTATTTGCCGAAAAAAATCCAAAAAAAAACCTAACAATTGTTGCACAAAAAAGCCAAAAAACTT CAATTTTGTCGGAAAAAAACAATTTTCCTTTAAAAAACGATTTTTCTGAAAAAAAAAACTTCAAT TTTTGCTGAAAATAACGAAAAAAATCTCAAAAAAACCAGAAAGAAAAATCAATTTTCTTTAAAAA AAAACTATTTTTCTGAAAAAAAACAAAACAAAAACTTCGATTTTGGCTGAAAATAACGAAAAAAT CAATGTTTTCAAAAAAAAAGTCATTTTAAAAAATCCGTTTTTGAAAAAAAAAACGAATTTTGTCA AAAAAAAAACCAAAAAAAATTTTTTTGTAAAAATTTGTTCTTAAAAACTCAAATTTTGTAGGAAA AATTAAATTTTTACAAAAAAAAATAGATATTTACCCAAATAATCAGAAAAGACTGCCAAAAATCA ATTTTCGCCCTAAAAAAACTAATTAAAACCATTTTTTGCAGTGAT Found at i:3023280 original size:9 final size:9 Alignment explanation
Indices: 3023263--3023280 Score: 29 Period size: 9 Copynumber: 2.0 Consensus size: 9 3023253 CGCTGCTCCA 3023263 CAACAACAG 1 CAACAACAG * 3023272 CAACCACAG 1 CAACAACAG 3023281 GGAGCACCAC Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 9 8 1.00 ACGTcount: A:0.50, C:0.39, G:0.11, T:0.00 Consensus pattern (9 bp): CAACAACAG Left flanking sequence: Indices 3022763 -- 3023262 AAAAAAAACTTCAATTTTTGCTGAAAATAACGAAAAAAATCTCAAAAAAACCAGAAAGAAAAATC AATTTTCTTTAAAAAAAAACTATTTTTCTGAAAAAAAACAAAACAAAAACTTCGATTTTGGCTGA AAATAACGAAAAAATCAATGTTTTCAAAAAAAAAGTCATTTTAAAAAATCCGTTTTTGAAAAAAA AAACGAATTTTGTCAAAAAAAAAACCAAAAAAAATTTTTTTGTAAAAATTTGTTCTTAAAAACTC AAATTTTGTAGGAAAAATTAAATTTTTACAAAAAAAAATAGATATTTACCCAAATAATCAGAAAA GACTGCCAAAAATCAATTTTCGCCCTAAAAAAACTAATTAAAACCATTTTTTGCAGTGATGGCAG CTGCGATGCCCCAAGGATTCGGACAAATGGCATTCGGACACATTGCTGATCTTCTTCGTACTGGA ATTGCTGCAGAAATTCGTGGAGCTCAACAGCAACACGCTGCTCCA Right flanking sequence: Indices 3023281 -- 3023780 GGAGCACCACAAGAACCAGAAACTCCACAAGCTGAGCAACCACAACCACGTGCTGCTGCTGGTGG TAGAGAACAACAGCATACACTTGAAGAATTTATTAGAAACATGTTCAGAGTAAGCTTAAACTATT CTGAAACTCTGCGGCGCATTTTTTTCAGTTTAAAAAAAATTTCCTATAAAAAATGTTTTTTTTTC ACGAAAATCACAACAAAAAATTTTTTTTTGATGATTTTTACGGAAAATTTTCCAGAAAATAACCT TTTTTCTCTTGAAATTTGATATTTTTGCAGTTTAAACGATTTTTTCCAAATTTTCAGTGAATTCT GCGAATGAAAATCAGCACAGAAAACATTTTTTTTAATTTTAGATCAATATTAAACGCTTATTTTT TAATTTTAGTGATAATTTTCCAGAAAAATTCGCTTTTTTCACATTTATCATGGAAAATTTGAAAA CAAAATCCCCATTGGAAAAAATCCCAATCAATTAAAAAATCTTTC Found at i:3023564 original size:7 final size:7 Alignment explanation
Indices: 3023549--3023564 Score: 25 Period size: 7 Copynumber: 2.3 Consensus size: 7 3023539 CTTTTTTCTC 3023549 TTGAAAT 1 TTGAAAT * 3023556 TTGATAT 1 TTGAAAT 3023563 TT 1 TT 3023565 TTGCAGTTTA Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56 Consensus pattern (7 bp): TTGAAAT Left flanking sequence: Indices 3023049 -- 3023548 TACAAAAAAAAATAGATATTTACCCAAATAATCAGAAAAGACTGCCAAAAATCAATTTTCGCCCT AAAAAAACTAATTAAAACCATTTTTTGCAGTGATGGCAGCTGCGATGCCCCAAGGATTCGGACAA ATGGCATTCGGACACATTGCTGATCTTCTTCGTACTGGAATTGCTGCAGAAATTCGTGGAGCTCA ACAGCAACACGCTGCTCCACAACAACAGCAACCACAGGGAGCACCACAAGAACCAGAAACTCCAC AAGCTGAGCAACCACAACCACGTGCTGCTGCTGGTGGTAGAGAACAACAGCATACACTTGAAGAA TTTATTAGAAACATGTTCAGAGTAAGCTTAAACTATTCTGAAACTCTGCGGCGCATTTTTTTCAG TTTAAAAAAAATTTCCTATAAAAAATGTTTTTTTTTCACGAAAATCACAACAAAAAATTTTTTTT TGATGATTTTTACGGAAAATTTTCCAGAAAATAACCTTTTTTCTC Right flanking sequence: Indices 3023565 -- 3024064 TTGCAGTTTAAACGATTTTTTCCAAATTTTCAGTGAATTCTGCGAATGAAAATCAGCACAGAAAA CATTTTTTTTAATTTTAGATCAATATTAAACGCTTATTTTTTAATTTTAGTGATAATTTTCCAGA AAAATTCGCTTTTTTCACATTTATCATGGAAAATTTGAAAACAAAATCCCCATTGGAAAAAATCC CAATCAATTAAAAAATCTTTCACATTTATAAATATAAAAATAAATATAAATGTGAAAGATTTTTA AATTGATTGGGATTTTTTCCAATGAGAATTTTTTTTTTTTCAAATTTTCCATAATAAATGTGAAA AAAAGCAAATTTTTCTGGAAAATCATCACTAAAATGAAAAAATAAGCGTTTAATAGTGGTTGAAC ATTAAAATTAACAAAAAATCATGTTCTGTGCTGATTTTCATGGGAAATACGTTTTTTTTTTCAGA AATTCACTGAAAATTTGAAAAAAAAATGTTCGTAAAAACTCTGCA Found at i:3024081 original size:7 final size:7 Alignment explanation
Indices: 3024066--3024081 Score: 25 Period size: 7 Copynumber: 2.3 Consensus size: 7 3024056 AACTCTGCAA 3024066 AAATATC 1 AAATATC * 3024073 AAATTTC 1 AAATATC 3024080 AA 1 AA 3024082 GAGAAAAAAG Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31 Consensus pattern (7 bp): AAATATC Left flanking sequence: Indices 3023566 -- 3024065 TGCAGTTTAAACGATTTTTTCCAAATTTTCAGTGAATTCTGCGAATGAAAATCAGCACAGAAAAC ATTTTTTTTAATTTTAGATCAATATTAAACGCTTATTTTTTAATTTTAGTGATAATTTTCCAGAA AAATTCGCTTTTTTCACATTTATCATGGAAAATTTGAAAACAAAATCCCCATTGGAAAAAATCCC AATCAATTAAAAAATCTTTCACATTTATAAATATAAAAATAAATATAAATGTGAAAGATTTTTAA ATTGATTGGGATTTTTTCCAATGAGAATTTTTTTTTTTTCAAATTTTCCATAATAAATGTGAAAA AAAGCAAATTTTTCTGGAAAATCATCACTAAAATGAAAAAATAAGCGTTTAATAGTGGTTGAACA TTAAAATTAACAAAAAATCATGTTCTGTGCTGATTTTCATGGGAAATACGTTTTTTTTTTCAGAA ATTCACTGAAAATTTGAAAAAAAAATGTTCGTAAAAACTCTGCAA Right flanking sequence: Indices 3024082 -- 3024581 GAGAAAAAAGGTTATTTTCTGGAAAATTTTCCGTAAAAATCATCAAAAAACTTCTTTTTTTTTTG GTGTGTTTTTTTTGGTTTCGTTAAAATTCTGCAAAAACATCAAATTTCGAGCAAAACTTGTGATT TGTATGAAAAAAATTTGTTTTTCTGAAAATCCTGAAAATCCTGCAAAAAATCAAATTCCGCGGGA AAAAATAGGATTTTCTGCAGAAATTTTTTTTTTTTGTGAAAAACAATTACAAAAAATTGGAAAGA AAATTTTTTAAGAGAAACGTTAAAAAATTTTTAATTATCTTTTTTTTTCATCGCAGAAAATTTGA AAAATCACTAAAATCCTGCAAAATCATCAAATTTCATGCGAAAAAATGTGATTTTCTTTTAAAAA AACGTTTTTTTTTGTGAAAATTGCCGAAATTTTTCGAAAATCCTGAAAATAGCGCAAAAACATCA CATTTTGCGTGATAAAAATGGGATTTTCTGCAAAAAAAACAAAAA Found at i:3024248 original size:9 final size:9 Alignment explanation
Indices: 3024234--3024258 Score: 43 Period size: 9 Copynumber: 2.8 Consensus size: 9 3024224 ATTTGTTTTT 3024234 CTGAAAATC 1 CTGAAAATC 3024243 CTGAAAATC 1 CTGAAAATC * 3024252 CTGCAAA 1 CTGAAAA 3024259 AAATCAAATT Statistics Matches: 15, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 9 15 1.00 ACGTcount: A:0.44, C:0.24, G:0.12, T:0.20 Consensus pattern (9 bp): CTGAAAATC Left flanking sequence: Indices 3023734 -- 3024233 AACAAAATCCCCATTGGAAAAAATCCCAATCAATTAAAAAATCTTTCACATTTATAAATATAAAA ATAAATATAAATGTGAAAGATTTTTAAATTGATTGGGATTTTTTCCAATGAGAATTTTTTTTTTT TCAAATTTTCCATAATAAATGTGAAAAAAAGCAAATTTTTCTGGAAAATCATCACTAAAATGAAA AAATAAGCGTTTAATAGTGGTTGAACATTAAAATTAACAAAAAATCATGTTCTGTGCTGATTTTC ATGGGAAATACGTTTTTTTTTTCAGAAATTCACTGAAAATTTGAAAAAAAAATGTTCGTAAAAAC TCTGCAAAAATATCAAATTTCAAGAGAAAAAAGGTTATTTTCTGGAAAATTTTCCGTAAAAATCA TCAAAAAACTTCTTTTTTTTTTGGTGTGTTTTTTTTGGTTTCGTTAAAATTCTGCAAAAACATCA AATTTCGAGCAAAACTTGTGATTTGTATGAAAAAAATTTGTTTTT Right flanking sequence: Indices 3024259 -- 3024758 AAATCAAATTCCGCGGGAAAAAATAGGATTTTCTGCAGAAATTTTTTTTTTTTGTGAAAAACAAT TACAAAAAATTGGAAAGAAAATTTTTTAAGAGAAACGTTAAAAAATTTTTAATTATCTTTTTTTT TCATCGCAGAAAATTTGAAAAATCACTAAAATCCTGCAAAATCATCAAATTTCATGCGAAAAAAT GTGATTTTCTTTTAAAAAAACGTTTTTTTTTGTGAAAATTGCCGAAATTTTTCGAAAATCCTGAA AATAGCGCAAAAACATCACATTTTGCGTGATAAAAATGGGATTTTCTGCAAAAAAAACAAAAAAA TGGAAAGAAACACTTTCAATAGAAACAACGCGGAAATTTTGAAAAAATCGCTAAAATCCTCCAAA ATCATCAAATTTCTTGCGAAAAAAAATGTGATTTTTGGGTGGAAAAAAAACGTATTTTTCGTGAA AATTTTGGCAGAAACGAAGAGAAAAAAAGTTTTTTTTTCGGAAAA Found at i:3025129 original size:8 final size:8 Alignment explanation
Indices: 3025113--3025136 Score: 41 Period size: 8 Copynumber: 3.0 Consensus size: 8 3025103 AGGGTGTCGT * 3025113 TTTTCGAA 1 TTTTTGAA 3025121 TTTTTGAA 1 TTTTTGAA 3025129 TTTTTGAA 1 TTTTTGAA 3025137 AATCGGAAAA Statistics Matches: 15, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 8 15 1.00 ACGTcount: A:0.25, C:0.04, G:0.12, T:0.58 Consensus pattern (8 bp): TTTTTGAA Left flanking sequence: Indices 3024613 -- 3025112 GCGGAAATTTTGAAAAAATCGCTAAAATCCTCCAAAATCATCAAATTTCTTGCGAAAAAAAATGT GATTTTTGGGTGGAAAAAAAACGTATTTTTCGTGAAAATTTTGGCAGAAACGAAGAGAAAAAAAG TTTTTTTTTCGGAAAATCACCGAAAATTTGAAAAAAAATCCGCAAAAAATTTATTGTGTTTAAAA ATGCTTCAAAAACCTCGCCAAGTATGACTTTTGGTTTAAAAATTGAACAAAATTTCAGCCAGATC CACGTGGAGCCGCCGAAGAAGCCGCCAGTGCTCAGCAGCAGCAGCAGCAACCACATCCAAATGTG ACATTCTCATTCCAAATGCCCGGTGGAATTGGTGTTCAGATTCATGCACATACTGCCGGAGGTGG TGGTGGTAACAATCCAGATGGAATGCCATTTGGGATGGAAATTGGGGAACGTGCTGATTTGGAGT CTGCAATGCAGGAGATTCTGGCTCAATTTCAGGTAAGGGTGTCGT Right flanking sequence: Indices 3025137 -- 3025636 AATCGGAAAAATGCACAGAAAATGAACCTTAAAATACTTTTTTTTTTAAATAAATTTTTTCGAAA AAGTAAAAGAAATTATCAAAATTTAGAGTTAATTTTCAAAAAATCGAAAAATTCGAAAAAAAATT TGAAAATTCATTTTAGCTAACAGAAAATCATTGTTTGCCCTAAAAAAAAATTATTTTTGTCAAAA AAAACTAATTTAAAATTTGGCAGAAAATGCATTTTCAATTCTCTCTTTTTTTCGAAAAAATCAAA CATTTTCAATTTTTCGTTAAAAAAATATCAATAACTTAAAAAAGAAAGAATTTAGCATTCACTAT AGCTGACAAAAAAGTTTTATGCCAAAAAACGGAAAATCAAAAAAACCAAAAACAAAAAAATGTTC GATTTATCTATTTAAAAAAACAAAAAAAAAATTGATTTTCCGTTTTTCAAAAAAAATCAAATAAT AAAAAAAAAAGAATTGAAAATGCATTTTCTGCCTTAAAACCCAAA Found at i:3025257 original size:9 final size:9 Alignment explanation
Indices: 3025239--3025262 Score: 41 Period size: 9 Copynumber: 2.7 Consensus size: 9 3025229 GTTAATTTTC 3025239 AAAAAATCG 1 AAAAAATCG * 3025248 AAAAATTCG 1 AAAAAATCG 3025257 AAAAAA 1 AAAAAA 3025263 AATTTGAAAA Statistics Matches: 13, Mismatches: 2, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 9 13 1.00 ACGTcount: A:0.71, C:0.08, G:0.08, T:0.12 Consensus pattern (9 bp): AAAAAATCG Left flanking sequence: Indices 3024739 -- 3025238 AAAGTTTTTTTTTCGGAAAATCACCGAAAATTTGAAAAAAAATCCGCAAAAAATTTATTGTGTTT AAAAATGCTTCAAAAACCTCGCCAAGTATGACTTTTGGTTTAAAAATTGAACAAAATTTCAGCCA GATCCACGTGGAGCCGCCGAAGAAGCCGCCAGTGCTCAGCAGCAGCAGCAGCAACCACATCCAAA TGTGACATTCTCATTCCAAATGCCCGGTGGAATTGGTGTTCAGATTCATGCACATACTGCCGGAG GTGGTGGTGGTAACAATCCAGATGGAATGCCATTTGGGATGGAAATTGGGGAACGTGCTGATTTG GAGTCTGCAATGCAGGAGATTCTGGCTCAATTTCAGGTAAGGGTGTCGTTTTTCGAATTTTTGAA TTTTTGAAAATCGGAAAAATGCACAGAAAATGAACCTTAAAATACTTTTTTTTTTAAATAAATTT TTTCGAAAAAGTAAAAGAAATTATCAAAATTTAGAGTTAATTTTC Right flanking sequence: Indices 3025263 -- 3025762 AATTTGAAAATTCATTTTAGCTAACAGAAAATCATTGTTTGCCCTAAAAAAAAATTATTTTTGTC AAAAAAAACTAATTTAAAATTTGGCAGAAAATGCATTTTCAATTCTCTCTTTTTTTCGAAAAAAT CAAACATTTTCAATTTTTCGTTAAAAAAATATCAATAACTTAAAAAAGAAAGAATTTAGCATTCA CTATAGCTGACAAAAAAGTTTTATGCCAAAAAACGGAAAATCAAAAAAACCAAAAACAAAAAAAT GTTCGATTTATCTATTTAAAAAAACAAAAAAAAAATTGATTTTCCGTTTTTCAAAAAAAATCAAA TAATAAAAAAAAAAGAATTGAAAATGCATTTTCTGCCTTAAAACCCAAAAAAAACTCAGTTTTTG TTGAAAAATCTATCTTCGTCAAAAAATTTTTTTTTCAACAACAATTTTTTGATCAAAAAAAAATT TTCTGGAAAAAAAACCAATTTCGGAATATCGGAAATCGAAAAAAA Found at i:3025506 original size:9 final size:9 Alignment explanation
Indices: 3025494--3025513 Score: 33 Period size: 9 Copynumber: 2.2 Consensus size: 9 3025484 CAAAAAACGG * 3025494 AAAATCAAA 1 AAAACCAAA 3025503 AAAACCAAA 1 AAAACCAAA 3025512 AA 1 AA 3025514 CAAAAAAATG Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.80, C:0.15, G:0.00, T:0.05 Consensus pattern (9 bp): AAAACCAAA Left flanking sequence: Indices 3024994 -- 3025493 CGGAGGTGGTGGTGGTAACAATCCAGATGGAATGCCATTTGGGATGGAAATTGGGGAACGTGCTG ATTTGGAGTCTGCAATGCAGGAGATTCTGGCTCAATTTCAGGTAAGGGTGTCGTTTTTCGAATTT TTGAATTTTTGAAAATCGGAAAAATGCACAGAAAATGAACCTTAAAATACTTTTTTTTTTAAATA AATTTTTTCGAAAAAGTAAAAGAAATTATCAAAATTTAGAGTTAATTTTCAAAAAATCGAAAAAT TCGAAAAAAAATTTGAAAATTCATTTTAGCTAACAGAAAATCATTGTTTGCCCTAAAAAAAAATT ATTTTTGTCAAAAAAAACTAATTTAAAATTTGGCAGAAAATGCATTTTCAATTCTCTCTTTTTTT CGAAAAAATCAAACATTTTCAATTTTTCGTTAAAAAAATATCAATAACTTAAAAAAGAAAGAATT TAGCATTCACTATAGCTGACAAAAAAGTTTTATGCCAAAAAACGG Right flanking sequence: Indices 3025514 -- 3026013 CAAAAAAATGTTCGATTTATCTATTTAAAAAAACAAAAAAAAAATTGATTTTCCGTTTTTCAAAA AAAATCAAATAATAAAAAAAAAAGAATTGAAAATGCATTTTCTGCCTTAAAACCCAAAAAAAACT CAGTTTTTGTTGAAAAATCTATCTTCGTCAAAAAATTTTTTTTTCAACAACAATTTTTTGATCAA AAAAAAATTTTCTGGAAAAAAAACCAATTTCGGAATATCGGAAATCGAAAAAAAAACGACAAATT TTTGATTTTCCGCTTAAAAAAATCAATTTTTTTAATCAAAAAATTAAAAAAAAAAATTAAATCCA TTTTAGCTAACAAAAATAAACATTTTATGCTCGTAAAACCAAAAAAAATCAATTTCGAAATATTG GAAAAACTAAAAAAAACGAAATATTTTCGATTTTCCTATTTAAAAAAATCGAATTTTTTTCAAAA AGTTTTAAAAAACGAAACAATTTTTAAATATTTTCTGCCTTAAAA Found at i:3025751 original size:8 final size:8 Alignment explanation
Indices: 3025734--3025755 Score: 30 Period size: 8 Copynumber: 2.9 Consensus size: 8 3025724 AAAAAAAACC * 3025734 AATTTCGG 1 AATATCGG 3025742 AATATCGG 1 AATATCGG 3025750 AA-ATCG 1 AATATCG 3025756 AAAAAAAAAC Statistics Matches: 13, Mismatches: 1, Indels: 1 0.87 0.07 0.07 Matches are distributed among these distances: 7 4 0.31 8 9 0.69 ACGTcount: A:0.36, C:0.14, G:0.23, T:0.27 Consensus pattern (8 bp): AATATCGG Left flanking sequence: Indices 3025234 -- 3025733 TTTTCAAAAAATCGAAAAATTCGAAAAAAAATTTGAAAATTCATTTTAGCTAACAGAAAATCATT GTTTGCCCTAAAAAAAAATTATTTTTGTCAAAAAAAACTAATTTAAAATTTGGCAGAAAATGCAT TTTCAATTCTCTCTTTTTTTCGAAAAAATCAAACATTTTCAATTTTTCGTTAAAAAAATATCAAT AACTTAAAAAAGAAAGAATTTAGCATTCACTATAGCTGACAAAAAAGTTTTATGCCAAAAAACGG AAAATCAAAAAAACCAAAAACAAAAAAATGTTCGATTTATCTATTTAAAAAAACAAAAAAAAAAT TGATTTTCCGTTTTTCAAAAAAAATCAAATAATAAAAAAAAAAGAATTGAAAATGCATTTTCTGC CTTAAAACCCAAAAAAAACTCAGTTTTTGTTGAAAAATCTATCTTCGTCAAAAAATTTTTTTTTC AACAACAATTTTTTGATCAAAAAAAAATTTTCTGGAAAAAAAACC Right flanking sequence: Indices 3025756 -- 3026255 AAAAAAAAACGACAAATTTTTGATTTTCCGCTTAAAAAAATCAATTTTTTTAATCAAAAAATTAA AAAAAAAAATTAAATCCATTTTAGCTAACAAAAATAAACATTTTATGCTCGTAAAACCAAAAAAA ATCAATTTCGAAATATTGGAAAAACTAAAAAAAACGAAATATTTTCGATTTTCCTATTTAAAAAA ATCGAATTTTTTTCAAAAAGTTTTAAAAAACGAAACAATTTTTAAATATTTTCTGCCTTAAAAAC CAAAAAACGAAATGAAAAATCTTCGTCAAAAAAATTTATTCAGCCAACTTGTTCTGAAAATAACC AAAATTAACAGTTTTTGTTCAAAAAAAATTTTCTAAAAACCAATTTCGAAATAATGGAAAATCGA AAATCCATTTTAGCTAACAAAAAAAATTAATTTTTGCCCTTAAAAATTTTTCTGAAAAAAAAAAA ACAAAAAACCATTCGATAAATCGGAAAATCGAATTTTTTAATCGA Found at i:3025824 original size:8 final size:8 Alignment explanation
Indices: 3025807--3025824 Score: 29 Period size: 8 Copynumber: 2.2 Consensus size: 8 3025797 CAATTTTTTT 3025807 AATCAAAA 1 AATCAAAA * 3025815 AATTAAAA 1 AATCAAAA 3025823 AA 1 AA 3025825 AAAAATTAAA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.78, C:0.06, G:0.00, T:0.17 Consensus pattern (8 bp): AATCAAAA Left flanking sequence: Indices 3025307 -- 3025806 TAAAAAAAAATTATTTTTGTCAAAAAAAACTAATTTAAAATTTGGCAGAAAATGCATTTTCAATT CTCTCTTTTTTTCGAAAAAATCAAACATTTTCAATTTTTCGTTAAAAAAATATCAATAACTTAAA AAAGAAAGAATTTAGCATTCACTATAGCTGACAAAAAAGTTTTATGCCAAAAAACGGAAAATCAA AAAAACCAAAAACAAAAAAATGTTCGATTTATCTATTTAAAAAAACAAAAAAAAAATTGATTTTC CGTTTTTCAAAAAAAATCAAATAATAAAAAAAAAAGAATTGAAAATGCATTTTCTGCCTTAAAAC CCAAAAAAAACTCAGTTTTTGTTGAAAAATCTATCTTCGTCAAAAAATTTTTTTTTCAACAACAA TTTTTTGATCAAAAAAAAATTTTCTGGAAAAAAAACCAATTTCGGAATATCGGAAATCGAAAAAA AAACGACAAATTTTTGATTTTCCGCTTAAAAAAATCAATTTTTTT Right flanking sequence: Indices 3025825 -- 3026324 AAAAATTAAATCCATTTTAGCTAACAAAAATAAACATTTTATGCTCGTAAAACCAAAAAAAATCA ATTTCGAAATATTGGAAAAACTAAAAAAAACGAAATATTTTCGATTTTCCTATTTAAAAAAATCG AATTTTTTTCAAAAAGTTTTAAAAAACGAAACAATTTTTAAATATTTTCTGCCTTAAAAACCAAA AAACGAAATGAAAAATCTTCGTCAAAAAAATTTATTCAGCCAACTTGTTCTGAAAATAACCAAAA TTAACAGTTTTTGTTCAAAAAAAATTTTCTAAAAACCAATTTCGAAATAATGGAAAATCGAAAAT CCATTTTAGCTAACAAAAAAAATTAATTTTTGCCCTTAAAAATTTTTCTGAAAAAAAAAAAACAA AAAACCATTCGATAAATCGGAAAATCGAATTTTTTAATCGAACAATTCAAAAAAAAAATTAAACC CATTTTAGCTAACAAAAATAAACATTTTATGCTCTTAAAACCAAA Found at i:3025920 original size:10 final size:10 Alignment explanation
Indices: 3025905--3025924 Score: 33 Period size: 10 Copynumber: 2.0 Consensus size: 10 3025895 GAAATATTGG * 3025905 AAAAACTAAA 1 AAAAACGAAA 3025915 AAAAACGAAA 1 AAAAACGAAA 3025925 TATTTTCGAT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 10 9 1.00 ACGTcount: A:0.80, C:0.10, G:0.05, T:0.05 Consensus pattern (10 bp): AAAAACGAAA Left flanking sequence: Indices 3025405 -- 3025904 ATTTTTCGTTAAAAAAATATCAATAACTTAAAAAAGAAAGAATTTAGCATTCACTATAGCTGACA AAAAAGTTTTATGCCAAAAAACGGAAAATCAAAAAAACCAAAAACAAAAAAATGTTCGATTTATC TATTTAAAAAAACAAAAAAAAAATTGATTTTCCGTTTTTCAAAAAAAATCAAATAATAAAAAAAA AAGAATTGAAAATGCATTTTCTGCCTTAAAACCCAAAAAAAACTCAGTTTTTGTTGAAAAATCTA TCTTCGTCAAAAAATTTTTTTTTCAACAACAATTTTTTGATCAAAAAAAAATTTTCTGGAAAAAA AACCAATTTCGGAATATCGGAAATCGAAAAAAAAACGACAAATTTTTGATTTTCCGCTTAAAAAA ATCAATTTTTTTAATCAAAAAATTAAAAAAAAAAATTAAATCCATTTTAGCTAACAAAAATAAAC ATTTTATGCTCGTAAAACCAAAAAAAATCAATTTCGAAATATTGG Right flanking sequence: Indices 3025925 -- 3026424 TATTTTCGATTTTCCTATTTAAAAAAATCGAATTTTTTTCAAAAAGTTTTAAAAAACGAAACAAT TTTTAAATATTTTCTGCCTTAAAAACCAAAAAACGAAATGAAAAATCTTCGTCAAAAAAATTTAT TCAGCCAACTTGTTCTGAAAATAACCAAAATTAACAGTTTTTGTTCAAAAAAAATTTTCTAAAAA CCAATTTCGAAATAATGGAAAATCGAAAATCCATTTTAGCTAACAAAAAAAATTAATTTTTGCCC TTAAAAATTTTTCTGAAAAAAAAAAAACAAAAAACCATTCGATAAATCGGAAAATCGAATTTTTT AATCGAACAATTCAAAAAAAAAATTAAACCCATTTTAGCTAACAAAAATAAACATTTTATGCTCT TAAAACCAAAAAAAAATCAATTTCGAAATTTTGGAACAACGAAAAAACGAAATTTTTTTATTTTT TTGTTTTTTCGTTTTTCCAGAAAATCTAATTTTTTTTCAGAAAAA Found at i:3026023 original size:8 final size:8 Alignment explanation
Indices: 3026010--3026027 Score: 29 Period size: 8 Copynumber: 2.2 Consensus size: 8 3026000 TTTCTGCCTT 3026010 AAAAACCA 1 AAAAACCA * 3026018 AAAAACGA 1 AAAAACCA 3026026 AA 1 AA 3026028 TGAAAAATCT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.78, C:0.17, G:0.06, T:0.00 Consensus pattern (8 bp): AAAAACCA Left flanking sequence: Indices 3025510 -- 3026009 AAAACAAAAAAATGTTCGATTTATCTATTTAAAAAAACAAAAAAAAAATTGATTTTCCGTTTTTC AAAAAAAATCAAATAATAAAAAAAAAAGAATTGAAAATGCATTTTCTGCCTTAAAACCCAAAAAA AACTCAGTTTTTGTTGAAAAATCTATCTTCGTCAAAAAATTTTTTTTTCAACAACAATTTTTTGA TCAAAAAAAAATTTTCTGGAAAAAAAACCAATTTCGGAATATCGGAAATCGAAAAAAAAACGACA AATTTTTGATTTTCCGCTTAAAAAAATCAATTTTTTTAATCAAAAAATTAAAAAAAAAAATTAAA TCCATTTTAGCTAACAAAAATAAACATTTTATGCTCGTAAAACCAAAAAAAATCAATTTCGAAAT ATTGGAAAAACTAAAAAAAACGAAATATTTTCGATTTTCCTATTTAAAAAAATCGAATTTTTTTC AAAAAGTTTTAAAAAACGAAACAATTTTTAAATATTTTCTGCCTT Right flanking sequence: Indices 3026028 -- 3026527 TGAAAAATCTTCGTCAAAAAAATTTATTCAGCCAACTTGTTCTGAAAATAACCAAAATTAACAGT TTTTGTTCAAAAAAAATTTTCTAAAAACCAATTTCGAAATAATGGAAAATCGAAAATCCATTTTA GCTAACAAAAAAAATTAATTTTTGCCCTTAAAAATTTTTCTGAAAAAAAAAAAACAAAAAACCAT TCGATAAATCGGAAAATCGAATTTTTTAATCGAACAATTCAAAAAAAAAATTAAACCCATTTTAG CTAACAAAAATAAACATTTTATGCTCTTAAAACCAAAAAAAAATCAATTTCGAAATTTTGGAACA ACGAAAAAACGAAATTTTTTTATTTTTTTGTTTTTTCGTTTTTCCAGAAAATCTAATTTTTTTTC AGAAAAAAAAAACGAAAAAATGTAGATTTTTCAATTTTTTTTTTTGAAAAATTTTTAAACAGTAA AAAAAAACCCTATGATTCCAGGCTGCGGGTGGTGAAGGTGGACAA Found at i:3026149 original size:7 final size:7 Alignment explanation
Indices: 3026133--3026150 Score: 29 Period size: 7 Copynumber: 2.6 Consensus size: 7 3026123 ATTTCGAAAT * 3026133 AATGGAA 1 AATCGAA 3026140 AATCGAA 1 AATCGAA 3026147 AATC 1 AATC 3026151 CATTTTAGCT Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.56, C:0.11, G:0.17, T:0.17 Consensus pattern (7 bp): AATCGAA Left flanking sequence: Indices 3025633 -- 3026132 CAAAAAAAACTCAGTTTTTGTTGAAAAATCTATCTTCGTCAAAAAATTTTTTTTTCAACAACAAT TTTTTGATCAAAAAAAAATTTTCTGGAAAAAAAACCAATTTCGGAATATCGGAAATCGAAAAAAA AACGACAAATTTTTGATTTTCCGCTTAAAAAAATCAATTTTTTTAATCAAAAAATTAAAAAAAAA AATTAAATCCATTTTAGCTAACAAAAATAAACATTTTATGCTCGTAAAACCAAAAAAAATCAATT TCGAAATATTGGAAAAACTAAAAAAAACGAAATATTTTCGATTTTCCTATTTAAAAAAATCGAAT TTTTTTCAAAAAGTTTTAAAAAACGAAACAATTTTTAAATATTTTCTGCCTTAAAAACCAAAAAA CGAAATGAAAAATCTTCGTCAAAAAAATTTATTCAGCCAACTTGTTCTGAAAATAACCAAAATTA ACAGTTTTTGTTCAAAAAAAATTTTCTAAAAACCAATTTCGAAAT Right flanking sequence: Indices 3026151 -- 3026650 CATTTTAGCTAACAAAAAAAATTAATTTTTGCCCTTAAAAATTTTTCTGAAAAAAAAAAAACAAA AAACCATTCGATAAATCGGAAAATCGAATTTTTTAATCGAACAATTCAAAAAAAAAATTAAACCC ATTTTAGCTAACAAAAATAAACATTTTATGCTCTTAAAACCAAAAAAAAATCAATTTCGAAATTT TGGAACAACGAAAAAACGAAATTTTTTTATTTTTTTGTTTTTTCGTTTTTCCAGAAAATCTAATT TTTTTTCAGAAAAAAAAAACGAAAAAATGTAGATTTTTCAATTTTTTTTTTTGAAAAATTTTTAA ACAGTAAAAAAAAACCCTATGATTCCAGGCTGCGGGTGGTGAAGGTGGACAACGTCAAGGTGGAT TCACAGAAGCTGAAGTGAAAGAGTATCTTCCAATGAAAAAAGTGACACAGGAGCATATTGATAAT GGAGCACAGTGTACTACGTGTTTTGATACATTCAAGTTGGATGAG Found at i:3026393 original size:8 final size:8 Alignment explanation
Indices: 3026367--3026395 Score: 44 Period size: 8 Copynumber: 3.6 Consensus size: 8 3026357 AAAAACGAAA * 3026367 TTTTTTTA 1 TTTTTTTG 3026375 TTTTTTTG 1 TTTTTTTG * 3026383 TTTTTTCG 1 TTTTTTTG 3026391 TTTTT 1 TTTTT 3026396 CCAGAAAATC Statistics Matches: 19, Mismatches: 2, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 8 19 1.00 ACGTcount: A:0.03, C:0.03, G:0.07, T:0.86 Consensus pattern (8 bp): TTTTTTTG Left flanking sequence: Indices 3025867 -- 3026366 GCTCGTAAAACCAAAAAAAATCAATTTCGAAATATTGGAAAAACTAAAAAAAACGAAATATTTTC GATTTTCCTATTTAAAAAAATCGAATTTTTTTCAAAAAGTTTTAAAAAACGAAACAATTTTTAAA TATTTTCTGCCTTAAAAACCAAAAAACGAAATGAAAAATCTTCGTCAAAAAAATTTATTCAGCCA ACTTGTTCTGAAAATAACCAAAATTAACAGTTTTTGTTCAAAAAAAATTTTCTAAAAACCAATTT CGAAATAATGGAAAATCGAAAATCCATTTTAGCTAACAAAAAAAATTAATTTTTGCCCTTAAAAA TTTTTCTGAAAAAAAAAAAACAAAAAACCATTCGATAAATCGGAAAATCGAATTTTTTAATCGAA CAATTCAAAAAAAAAATTAAACCCATTTTAGCTAACAAAAATAAACATTTTATGCTCTTAAAACC AAAAAAAAATCAATTTCGAAATTTTGGAACAACGAAAAAACGAAA Right flanking sequence: Indices 3026396 -- 3026895 CCAGAAAATCTAATTTTTTTTCAGAAAAAAAAAACGAAAAAATGTAGATTTTTCAATTTTTTTTT TTGAAAAATTTTTAAACAGTAAAAAAAAACCCTATGATTCCAGGCTGCGGGTGGTGAAGGTGGAC AACGTCAAGGTGGATTCACAGAAGCTGAAGTGAAAGAGTATCTTCCAATGAAAAAAGTGACACAG GAGCATATTGATAATGGAGCACAGTGTACTACGTGTTTTGATACATTCAAGTTGGATGAGGATGT TGGTGCACTCGACTGTAATCACATTTTCCATCGTCCGTGCATTGAGCCGTGGCTTAAGACTAAGA ATTCGTGTCCGGTGTGCCGTCAGAAGGTTAATATGAAAGAATGGAAAAAGAATCATCTGAAAAAG GTACGGGCTTCGTTTTTTTTTTTTAACAAAAAAAGTAATATATTTAGAATTTTTTTTTTTAATAT GTGAAACTTGCGGTTTTAACAAAAAAAATTCCATTTTTTTGGAAA Found at i:3027002 original size:7 final size:7 Alignment explanation
Indices: 3026990--3027003 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 3026980 CTTACAATTC 3026990 TTCAAAA 1 TTCAAAA 3026997 TTCAAAA 1 TTCAAAA 3027004 ATTTCCCATT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29 Consensus pattern (7 bp): TTCAAAA Left flanking sequence: Indices 3026490 -- 3026989 CCCTATGATTCCAGGCTGCGGGTGGTGAAGGTGGACAACGTCAAGGTGGATTCACAGAAGCTGAA GTGAAAGAGTATCTTCCAATGAAAAAAGTGACACAGGAGCATATTGATAATGGAGCACAGTGTAC TACGTGTTTTGATACATTCAAGTTGGATGAGGATGTTGGTGCACTCGACTGTAATCACATTTTCC ATCGTCCGTGCATTGAGCCGTGGCTTAAGACTAAGAATTCGTGTCCGGTGTGCCGTCAGAAGGTT AATATGAAAGAATGGAAAAAGAATCATCTGAAAAAGGTACGGGCTTCGTTTTTTTTTTTTAACAA AAAAAGTAATATATTTAGAATTTTTTTTTTTAATATGTGAAACTTGCGGTTTTAACAAAAAAAAT TCCATTTTTTTGGAAAAAAATCGCAGTTTTAATTTTTTTTTTGAAAAATGGAGGTTTTCAGGGTT TTTTTAACCACTAGTTTCACAGAAAAATTGAAATTCTTACAATTC Right flanking sequence: Indices 3027004 -- 3027503 ATTTCCCATTTTGTTTTAAAAAAATAGTAATTTTATTACGGGGAACACAAAATTTTGAGAATACG TACTGTGCAACATATTTGACGCGCAAAATATCTCGTAGCGAAAACTACAGTAACTCTTTAAATGA CTACTGTAGCGCTTGTGTCGATTTACGGGATCTCGATGTTTTTATTTATCGGCAGAATATTAGGC AAAAACAAAAAATAAGGCAAAAACAAAAGAGAAAATACTACGAAAAAAACGGCGGAAAATTGAAT ATCCCTGTTCGAGCCCGTAAATCGACACAAGCGCTACAGTAGTAATTTAAAGAATTACTGTAGTT TTCGCTACGAGATATTTTGCGCATTCTCGGAATTTTGTGTTCCCGTAATAAAATGTTCAACTAGT AATTTTAGAATAAAACAGGGTGGGCAGCAATTGCCAATTCGTCGATTTGCCGCAATTTTCATTTT CGGCGAATTGCCGGGTTGCCGGAAATTTGAAAAATGGCAAATTGC Found at i:3028080 original size:10 final size:10 Alignment explanation
Indices: 3028062--3028083 Score: 37 Period size: 10 Copynumber: 2.2 Consensus size: 10 3028052 TTTCCTATTG 3028062 AAAAAACGAA 1 AAAAAACGAA * 3028072 AAAATACGAA 1 AAAAAACGAA 3028082 AA 1 AA 3028084 CCCGCGCCCT Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 10 11 1.00 ACGTcount: A:0.77, C:0.09, G:0.09, T:0.05 Consensus pattern (10 bp): AAAAAACGAA Left flanking sequence: Indices 3027562 -- 3028061 GTCAAATTGCCGGGTTGCCGGAATTTTCCATTTTCGTCAAATTGTTGGTTTGCCGAAAATTTGAA AAAAAACGGCAAATTGCCAATTTGTCGATTTGCCGGAATTTTTCATTTTCGGAAAATTGCCGACT TTGCCAGAAATTTGAAAAATAGCAAAATGCCGGTTTGCCGGAAATTTGAAATAACGGCAAATTGC CGGGTTGCCGGAAACTTTTATTTTTGGCAATTTTGAAATCTTATCATCGATCTCAAATAGGGCCT GAACGTTGCCGAATTTGAAGTCGTGAAAGTTGGGTTTTGCAAGCCGCCGCACGCTTTCTTTCGTA TTTTTCGCTTTTTCAACAGGAAATTTCAAACGGAATTCAATTGAAAATAGATTTTTATTGAAAAT TACATTCTTTTTCTGAATAGCTTTATTTGAGCCAAATTAGTTGGAAAAGAATATAATTTTCAAAA TAAAAATCAATTTTCAATTGATTTTCCCATCGAAATTTCCTATTG Right flanking sequence: Indices 3028084 -- 3028583 CCCGCGCCCTCTGCCTATTATATACAATAAATATCTGTTTTTTTTCAGCTCCAGGAAGCTGATCT CGATTCGCTCGACTAGAAGCAGTGATCACATCTGCAAACGTGTAAATTTCTTTCTACTTGTGTAC ATTTTCTTCTTCTCCTCTGTTAGCTTTTTTATGTCTACCTAAATCAAAACGAACACCATCTTTCC GTTGTGCGTCTTCTCCAGTCTTGATTCCATAATGTTTTGACCATTCATTAAATACCCAATTTTTC ATTCATAAGCGTTAAATAGAAATGCTTAAGAAGAAATAAATAGTTTTAAATAAATCATTGGACTA GTGTCACAGGTGCGGAAAACAAATAAATTAGAGATAATATTCCCGGTATTTAAAAGCAAAATGAT ATATTAGTTTTCCTTATGCAACAGGACGAAGAGACCGAGGAAGGCGAGTACGGCGTATTTGAGCT TTGGATAGTCGTTCATAATGATTGTCACCATTCCAACATATGGAA i:3028820 original size:9 final size:9 Alignment explanation
Indices: 3028803--3028820 Score: 29 Period size: 9 Copynumber: 2.0 Consensus size: 9 3028793 AAAATTTTTT * 3028803 TTTGGAAAA 1 TTTGAAAAA 3028812 TTTGAAAAA 1 TTTGAAAAA 3028821 AAAATTGCCG Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 9 8 1.00 ACGTcount: A:0.50, C:0.00, G:0.17, T:0.33 Consensus pattern (9 bp): TTTGAAAAA Left flanking sequence: Indices 3028303 -- 3028802 TTCCATAATGTTTTGACCATTCATTAAATACCCAATTTTTCATTCATAAGCGTTAAATAGAAATG CTTAAGAAGAAATAAATAGTTTTAAATAAATCATTGGACTAGTGTCACAGGTGCGGAAAACAAAT AAATTAGAGATAATATTCCCGGTATTTAAAAGCAAAATGATATATTAGTTTTCCTTATGCAACAG GACGAAGAGACCGAGGAAGGCGAGTACGGCGTATTTGAGCTTTGGATAGTCGTTCATAATGATTG TCACCATTCCAACATATGGAAGAAGTCCCTTTGTTCGGCCAACGACGTCTGTACGGCTGAGCCAA AGTTGTCCAGGAGCATAGAGGCCACGATCATCGACTTGATTATTGTCTCCTTTTGTTAGAATCTT TGTGTTGTCAGCTGACTTCTCGTGGACCTGAAAATCATTTTGAATTATAGATTTCTAAATAAAAG TAGGAATCGGGGGTGGGCGGAAAACGACGACTGAAAAAATTTTTT Right flanking sequence: Indices 3028821 -- 3029320 AAAATTGCCGGAAATTTTCAATTCCGGCAATTTGCCATTTTGCCGGAAATTTTCAATTCCGGCAA ATTGTTGTTTTTCCAATTTGCCGGAAATTTGTAATTCCGACATATTGCCGATTTGCCGGAAATTT GTAATTCCGACAAATTGCCGATTTGCCGGAAATTGTTTATTCCGGCAATTTGTCGTTTTGCCAGT TTGCCGGAAATTTTCAATTCCGGCAAATTTAAGATTTACCGGAAAAACGGCAAATTTCCGAAAAT TTTCGGCAAATTGTGGTTTTGCACATTTTTTGGAAATTAAGAAATTTCAATTTTAATCGGCAAAT TTGTACGCATCCTAATTATAATTTCCGGCAAATCGGGAATTTTTGGCCGATTTGCCGAACAGCAG TTGCCGGCCACTCCTGGTAGGAATCTCCGATCAAATTGAGGCTTCACCGATCGGAAAAACGGGAG AACTCAAACCACGCCATTTTTCTGTGCCGCACGCAATTTTTTCTG Found at i:3029337 original size:7 final size:7 Alignment explanation
Indices: 3029322--3029338 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 3029312 TTTTTTCTGC 3029322 AAATGTT 1 AAATGTT * 3029329 AAATTTT 1 AAATGTT 3029336 AAA 1 AAA 3029339 CAGGACAACG Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41 Consensus pattern (7 bp): AAATGTT Left flanking sequence: Indices 3028822 -- 3029321 AAATTGCCGGAAATTTTCAATTCCGGCAATTTGCCATTTTGCCGGAAATTTTCAATTCCGGCAAA TTGTTGTTTTTCCAATTTGCCGGAAATTTGTAATTCCGACATATTGCCGATTTGCCGGAAATTTG TAATTCCGACAAATTGCCGATTTGCCGGAAATTGTTTATTCCGGCAATTTGTCGTTTTGCCAGTT TGCCGGAAATTTTCAATTCCGGCAAATTTAAGATTTACCGGAAAAACGGCAAATTTCCGAAAATT TTCGGCAAATTGTGGTTTTGCACATTTTTTGGAAATTAAGAAATTTCAATTTTAATCGGCAAATT TGTACGCATCCTAATTATAATTTCCGGCAAATCGGGAATTTTTGGCCGATTTGCCGAACAGCAGT TGCCGGCCACTCCTGGTAGGAATCTCCGATCAAATTGAGGCTTCACCGATCGGAAAAACGGGAGA ACTCAAACCACGCCATTTTTCTGTGCCGCACGCAATTTTTTCTGC Right flanking sequence: Indices 3029339 -- 3029838 CAGGACAACGAAGCTCCGAACGCATTCGCAATAAACAACAAGCCGTGCGTTATTTCGGAGCTTCG TCGTCTTGTTTGAAATTAAAATTTTGCAGAAAAACTTGCGTGCGGCACAGAAAAATGGGCGTGGT TTTAGTTCTCCTGTTACACCATTTCTCCATTCGGCGGTGCCTCGGGGATACGGGAAACATTGCAA AAACCGTGCCAGAGTTACAAACAATATATCCGAGAGAAAGGCCAAAAATGCCCCTTTTTTTGCAA CTCTGGCACGGTTTTTTTTTGCTCCGCCCGCAATTTTTCCTGTTCAATTTTTTTGAAAAAATAGG AAATAGGACAAAATTTGTGCTAAAACTTCAAATTTCGCCAACTTTTCCGTGTCGCAGAGGCCGGA AATAGATTTTTACTCGATAATTGTCCTTTTAGTCGCTTATCTCACGTTTTTTCGCCAATTTGAAG CTATTATTAATGTGCTTAAATTATTGAAATAACCTGAGTTAAACG Found at i:3029669 original size:7 final size:7 Alignment explanation
Indices: 3029657--3029671 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 3029647 TTTTTTGAAA 3029657 AAATAGG 1 AAATAGG 3029664 AAATAGG 1 AAATAGG 3029671 A 1 A 3029672 CAAAATTTGT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.60, C:0.00, G:0.27, T:0.13 Consensus pattern (7 bp): AAATAGG Left flanking sequence: Indices 3029157 -- 3029656 CTAATTATAATTTCCGGCAAATCGGGAATTTTTGGCCGATTTGCCGAACAGCAGTTGCCGGCCAC TCCTGGTAGGAATCTCCGATCAAATTGAGGCTTCACCGATCGGAAAAACGGGAGAACTCAAACCA CGCCATTTTTCTGTGCCGCACGCAATTTTTTCTGCAAATGTTAAATTTTAAACAGGACAACGAAG CTCCGAACGCATTCGCAATAAACAACAAGCCGTGCGTTATTTCGGAGCTTCGTCGTCTTGTTTGA AATTAAAATTTTGCAGAAAAACTTGCGTGCGGCACAGAAAAATGGGCGTGGTTTTAGTTCTCCTG TTACACCATTTCTCCATTCGGCGGTGCCTCGGGGATACGGGAAACATTGCAAAAACCGTGCCAGA GTTACAAACAATATATCCGAGAGAAAGGCCAAAAATGCCCCTTTTTTTGCAACTCTGGCACGGTT TTTTTTTGCTCCGCCCGCAATTTTTCCTGTTCAATTTTTTTGAAA Right flanking sequence: Indices 3029672 -- 3030171 CAAAATTTGTGCTAAAACTTCAAATTTCGCCAACTTTTCCGTGTCGCAGAGGCCGGAAATAGATT TTTACTCGATAATTGTCCTTTTAGTCGCTTATCTCACGTTTTTTCGCCAATTTGAAGCTATTATT AATGTGCTTAAATTATTGAAATAACCTGAGTTAAACGACAAAAATTAGCAAAAAATGACAATAAT CAGATAAAATTCAATTTCCGGCTGCTGGGACACAAAAAATTCGGCAATATTAGGTTAAGTACGTC GTTTTTTCATAATTTTTCATTGTAAAATTCGATTTTTTGGCGCCATTTCGTGTCAGTCACTCCTT CGAAGGTAGTACCTTGATAACTCTGTGCACAATTGGAATTTCGCGTCCTTCAACCTTGAAAACTG TGATATCACCGACGCGTACTGGATCCTCAAGATCATTGGTCAACAGAAGCAGATCTCCACGGTAG AATGCTGGCTCCATTGAGCCGGAGAGAACGACAACTACTGGAGAA Found at i:3031278 original size:7 final size:7 Alignment explanation
Indices: 3031262--3031279 Score: 29 Period size: 7 Copynumber: 2.6 Consensus size: 7 3031252 TGGATTTTAA 3031262 AAAAAGT 1 AAAAAGT * 3031269 AAAAATT 1 AAAAAGT 3031276 AAAA 1 AAAA 3031280 TATTGTGAAA Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.78, C:0.00, G:0.06, T:0.17 Consensus pattern (7 bp): AAAAAGT Left flanking sequence: Indices 3030762 -- 3031261 TGGAAAAAAGCCTATTTTTTTGATGAAAATCATCACAAAAAATTCATTTTTAAAAAAAGAAAATT CCAAATATTTCGAAAAAAATTTTTACGAATTAAAAACTCCTGCGCGGTCCTGAAAAGAAAAACAT ATTTTCCATGAAAAATATTAAATTTGTCTTAAAAACTAAATTTTCTCTGGATTTTTCGATGATTT CCTATAAAAATACACCCTTTTTCCACTGAAAATCCCTTTTTTTCGCTCGAAAATAATTTTTTTGC AAAATTCAGTACCTGACGAATATTCATCTGGCGGATCTCGCTGAACATCGCAACATCGGGAAGGA ACTTCATCTGAAATGGGATTATGCGAGTTTTAAGTCCAATTAAAGAATATAAATGAGGAGAATAT AAAAAAAAAGATATTAAAAATGGTAAAAAACCAAGTTTTAAGTTCCAAAAAGCAAGTAAAACCAA TAAAATGAGATCCTTTAAGGTTTAAACGTAACAGATGGATTTTAA Right flanking sequence: Indices 3031280 -- 3031779 TATTGTGAAATAACGTGGTGATAGATAAATTATGATACAGCGAATCGTTGAAAACCAGATCATTC CGCTTGGCACAGTCCGAGAAAATCGTCCATCAAGGTTCCGATGGCAAAAATGTCGTTAGCATCGA CACGTGTTCCGATGAGCTTCACACGGATCTCATCATCATTCCGAATCACATTCGCCTCATCATTG GTCTTGTAGCACGGTTTCTCACTGTTCGGATCGAATTCCATGTCTGGTGGAATACAATGACGACT GATGAAGCATGAAAGTGGTCCGATATCACAGAAAATGCCGACTTTATTGACCTGTGTGACGACTC CATCGACGACTTGTCCTTTGAACGGGCGGAACACGATGGCCTTGTAACGGACCGGGTAGATGACG AATCCACGGCCAGGCTGGATCAGGCCGTGGCCGATCGTGTCGATTGTGGTGACTGCGATGACGAA TCCGTACTTTCCTGTGCACGTTCCCTCGACTTCGTTGAACAGCTT Found at i:3033524 original size:9 final size:9 Alignment explanation
Indices: 3033503--3033524 Score: 30 Period size: 9 Copynumber: 2.4 Consensus size: 9 3033493 TTATACCAGA * 3033503 AATAATAAT 1 AATAATAAG * 3033512 AATAATACG 1 AATAATAAG 3033521 AATA 1 AATA 3033525 TTTCAGAAGA Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 9 11 1.00 ACGTcount: A:0.64, C:0.05, G:0.05, T:0.27 Consensus pattern (9 bp): AATAATAAG Left flanking sequence: Indices 3033003 -- 3033502 ACATATGTACACACTTTCGGCGGGTATCTGGGAGAAATTCTTCAAGAAAAAAGACTATTATGTGG TGATAGTCGGTCTGGATAATGCTGGAAAAACTGTAAGTCTCTTGAATTTGAGATCTCACCGATTA ATATCAGAAATTATCGATTTCAGACGTTTCTGGAGCAAACAAAATCTCACTTTGTAAAGGACTAC GGGGTTCTGAATCCATCAAAAATCACGGCGACAGTTGGTTTGAATAGTAAGCCTCTAAAATGAAT TAAAAATCAAAAAATTTTTTTTTTCAATTTTCAGCTGGAAATGTCGAGCTCAACAACACATGTCT TCATTTCTGGGATCTCGGAGGCCAGGAGAGTTTACGAGAACTCTGGGCGACATATTACGACGATG CAAATGCCATGATTTTTGTTGTGGACGCAACAAGGAGCGATCTCTTCCCAATAGTAGCATCTCAG TTTAGTAAGTAGTTTGAAATTGAAATAAATCAAATTTATACCAGA Right flanking sequence: Indices 3033525 -- 3034024 TTTCAGAAGAAGTAATGGCCAACGAAATAGTTCAAAATATTCCAGTTTTAGTAGCGGTGAATAAA AGTGAAATGGAAGGAGCCGCCGCTGCCGCTGAGGTCAGATTTTTCTCAAAAATCGAAAAAAAAAA CCGAAATTCCTGCATTAAAATCATATTTTCCAGGTCCGAATGCTGCTCGAAGACGACAATCACCG CTCGGACCTTGCAGTTCTTCCGGTTTCGGCGCTAGAAGGAACAAATATCGAAAGATGTGTTCACT GGATCGTCCGATCGTTGGCTAGCCAGCCATTATACCTTTAACCTCTCGGGTAGCTGTATATAATA ATTATAATCTATTGCATACTGACATGAATAGAAGAATCCTGTGATGATTTCCTAACCTCACTGCA ACTTTTTTGAATGAGGGACGAGGAAATACGGTTTCTAGGCCACGGCCGGGGATCCGACAAGATTT AGCGGCAATTTATTTTGCTTTGTTTTCCGCGTTTTTTCTTTGGTT Found at i:3034725 original size:8 final size:8 Alignment explanation
Indices: 3034712--3034733 Score: 30 Period size: 7 Copynumber: 2.9 Consensus size: 8 3034702 AAATGATATT 3034712 AGTATTTA 1 AGTATTTA 3034720 AGTA-TTA 1 AGTATTTA * 3034727 AATATTT 1 AGTATTT 3034734 TTGTTTATAT Statistics Matches: 12, Mismatches: 1, Indels: 2 0.80 0.07 0.13 Matches are distributed among these distances: 7 6 0.50 8 6 0.50 ACGTcount: A:0.41, C:0.00, G:0.09, T:0.50 Consensus pattern (8 bp): AGTATTTA Left flanking sequence: Indices 3034212 -- 3034711 GACCGCTGAAAAAGTTTTGAGATTTTTAAAATTCAACTTTTTTGGTGAAAAAGTCGATATTTTCG CACAAAATGTTGAATTTTAAAAATCTCAAAACTTTTTTTCAGCGGTCTCGTTATGAAAATCAAGT AGTTTCAGCATCTAAGCAGTATATATATCATGTTTCGGAAAAAGTTTAGGTTTGGTATGCCTGTA ATCCATCATATTACATTGATCATTTTCACCGCTTCTTGCCGATTGTTCTAGCATCTGCGAAAAAA TATTTATCCATCAGTTTTAATAGGAAAAACGGGAAAAAAAACTGTGAAAAACAAAAAAAAAAACA AGCGGAAAACAAAGCAAGATAAATTGCCGCTAAATCTTGTCGGATCCTCGGCCATGGCCTAGAAA CCGCATTTCCTCGTCCCTCGTTTAAGAAAAGTTGCAGTGAACCCCTTCCCCTCTACCATGTTTTA ATACGGTTTCGGCTGATCTGACTTATTACACAAAAAAATGATATT Right flanking sequence: Indices 3034734 -- 3035233 TTGTTTATATCGTGCAATAAAAATTCTTTTTTTAATTGATTATTTACAAAATTTCAGAAAACGAA AGCTTGTGAGTTATGAGATTAAATAGGAATTGGCACCGCGTGGATGGTTAAAGAGATCGGGAAAA ATAAAACGCTACTCCAGAAATAATTCGAGTTCGAGAATTGAAAAATATTTTAAAAATTTGAAAAA GTGGAAGAAAAATCAATAAATCGATAATAACTGTTGAAATTAAAAGATCGATTCGTGAAAAGAGG CAGAGCGTAATTTTGCAATCCTGCGGCACGGTTTTGCTGATTTTTTCTATAAAATTTCGATTTGA ATTCTCTTTTTTTTTTAATAAAAAGACTATCCAATTTAGTTTTTATTTAAAAAAAAAGAGAATAA AACGGGCGTCAAAATAGGTGGAAAAACCGTGCCGCAAGGTTGCGAAATTACGCTCCGCCTTTTTT TCTGTGCACGGCTATCGATCGTTGACTTCCAACAGTACACCAAGA Found at i:3034927 original size:9 final size:9 Alignment explanation
Indices: 3034906--3034928 Score: 32 Period size: 9 Copynumber: 2.6 Consensus size: 9 3034896 GAGAATTGAA * * 3034906 AAATATTTT 1 AAAAATTTG 3034915 AAAAATTTG 1 AAAAATTTG 3034924 AAAAA 1 AAAAA 3034929 GTGGAAGAAA Statistics Matches: 12, Mismatches: 2, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 9 12 1.00 ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35 Consensus pattern (9 bp): AAAAATTTG Left flanking sequence: Indices 3034406 -- 3034905 AATCCATCATATTACATTGATCATTTTCACCGCTTCTTGCCGATTGTTCTAGCATCTGCGAAAAA ATATTTATCCATCAGTTTTAATAGGAAAAACGGGAAAAAAAACTGTGAAAAACAAAAAAAAAAAC AAGCGGAAAACAAAGCAAGATAAATTGCCGCTAAATCTTGTCGGATCCTCGGCCATGGCCTAGAA ACCGCATTTCCTCGTCCCTCGTTTAAGAAAAGTTGCAGTGAACCCCTTCCCCTCTACCATGTTTT AATACGGTTTCGGCTGATCTGACTTATTACACAAAAAAATGATATTAGTATTTAAGTATTAAATA TTTTTGTTTATATCGTGCAATAAAAATTCTTTTTTTAATTGATTATTTACAAAATTTCAGAAAAC GAAAGCTTGTGAGTTATGAGATTAAATAGGAATTGGCACCGCGTGGATGGTTAAAGAGATCGGGA AAAATAAAACGCTACTCCAGAAATAATTCGAGTTCGAGAATTGAA Right flanking sequence: Indices 3034929 -- 3035428 GTGGAAGAAAAATCAATAAATCGATAATAACTGTTGAAATTAAAAGATCGATTCGTGAAAAGAGG CAGAGCGTAATTTTGCAATCCTGCGGCACGGTTTTGCTGATTTTTTCTATAAAATTTCGATTTGA ATTCTCTTTTTTTTTTAATAAAAAGACTATCCAATTTAGTTTTTATTTAAAAAAAAAGAGAATAA AACGGGCGTCAAAATAGGTGGAAAAACCGTGCCGCAAGGTTGCGAAATTACGCTCCGCCTTTTTT TCTGTGCACGGCTATCGATCGTTGACTTCCAACAGTACACCAAGAATTATCTAAACTGGAGTAAG TGTATGAATTGGATCTAAAAGAGAACTATCGATAATTTGTGTGGGATCAGCGGCGAGAGAAGTCG CCGAATTTCGGCGTTGTTGAGGAGTTATTGCCCATCGGAAGCGTTCGTAAAGTGTGCCGGTACCG CTGAGCAGGTAGATTATTGCGAAGACAGGAATTGCGAGGACTGAG Found at