TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_III Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 13783317 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:11241239 original size:6 final size:6 Alignment explanation
Indices: 11241228--11241240 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 11241218 GTGTACGGTA 11241228 GTTTTT GTTTTT G 1 GTTTTT GTTTTT G 11241241 CGTTTTTCTA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.00, C:0.00, G:0.23, T:0.77 Consensus pattern (6 bp): GTTTTT Left flanking sequence: Indices 11240728 -- 11241227 TTTTTGGAAAATTTTGGATTAAATCGATTTTTATCGATTTTGGATCATTGCAACCTGCCCTCCAC TGATTAGATTCTAATTATCAGTGACACAAATGTCCTTCTCATGTACTATACTCCAGCAGTCTGCG TCTCTCTCCCTCCGATTGACTGGTTTTTTTCTTGAAGTGACACTAACTAACGAACCGAATTTACA CTACTTTTCTTCTCCATCGAAACTATTTTACAACGTTTCTCACTTTTCGAAATAAGTAAGAGTAA TAGGAATCTGTGAAAGTTGTGAAAGTTTTCAGATTAGATCGCTAGTTAGGCTTTTTAGTTATATA AGTAGTTACCAGTGGCGGATTTTTTTTGACTAATGACTAATTCGATGACTTTCTGTTTTAATTTA GTTTTCTGAATTCCGAAATATTCCCAAAATGCGATTTTTCAATTTCGGAAAAATCGATTTTAAAA CACAAAATCACTGTCTATGGTCTCGGCTCGACCGGGTGTACGGTA Right flanking sequence: Indices 11241241 -- 11241740 CGTTTTTCTAACGTGAAATCGGCAAAAACAATGTTTTTTCGTCAATGTTTCTCTTCAATTCGGCA ATTTTCCTCGTTTTTTGCCGTTTTTGAAAGATACAATTCTTCTGTGCAATTTGCCAATTTTCCTC TGAAATTAGGCAATTTTCCCGTGCAGATCGGCAATTTTCCCTACTATTCGGCAATGTTCCTAGTT TTTACGCCGTTTTTGTAAGAACCAATTTTTATTTGAAATTCGGAAATTTTCCTGTGCAATTCTAC AATTTTCCTGCAGTTCCGCAATTTTCCTATACAGTTCGGCAATTTTTCTAGTTTTTTACGCCGTT TTTAATAGGAAGAATTTTCTGTGCAAATCGGCAATTTTCCAGTACAATTTGCCAATTTTCCTAGT TTTTACTCTTCCTAATAATCCAAATTCCTTGTTGCTTCCCCATCTGCTCCGTCATCATTTCCTCC TCATCAGGCGTTGTCAAGGTGAAAGCCGTGTGAATTCACACGCGT Found at i:11243410 original size:2 final size:2 Alignment explanation
Indices: 11243398--11243416 Score: 31 Period size: 2 Copynumber: 10.0 Consensus size: 2 11243388 TTGCTCTGTG 11243398 TC TC T- TC TC TC TC TC TC TC 1 TC TC TC TC TC TC TC TC TC TC 11243417 ACTTTTTTGG Statistics Matches: 16, Mismatches: 0, Indels: 2 0.89 0.00 0.11 Matches are distributed among these distances: 1 1 0.06 2 15 0.94 ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53 Consensus pattern (2 bp): TC Left flanking sequence: Indices 11242898 -- 11243397 ATTCGGCAATTTTCCAGTGTAATTCGGCAATTTTCCCGTGCAATTCGGCAATTTCCAGTGCAATT CGGCAATTTTCCCGTGCAATTTGGCAATTTTCCAGTGCAATTCGGCAATTTTCCCGTGCAATTTG GCAATTTTCCAGTGCAATTCGGAAATTTTCCATTGCAATTCGGCAATTTTCCAGTGCAATTCGGC AATTTTCCAGTGTAATTCGGCAATTTTCCCGTGCAATTCGGCAATTTTCCCGTGCAATTCGGCAA TTTCCAGTGCAAATCGGATGATTTTTCTCGTTTTCTCGCAATTTTTAAAAGAAAACCCAAAGTTT TTCAAAAATTTCAATCGAAATTTGATAATTCGAACCATGCGAAAAAGCGTGAATTTGTAATTCTC TCTGAATTGTTGCAAACCGCGGGTGGGGGGAGTGAAAAACGAGAGAAAGACGCTCCCCAATACAA TATAGACACCATCAAATTTAAAGAGACGGATGCGCTTGCTCTGTG Right flanking sequence: Indices 11243417 -- 11243916 ACTTTTTTGGTTGAAGGGACGTTTCTATGTCTCTTTCTCTCTCTCTCATCTCTCTGGTTAGGTTG ATCGTTCTCTGGTGCACTCTGTCGATTGACGTACTATTTCTTGTGTATGTGTCACCTCCCCAGTG TCCGTCCGCAGGTTTCTCTTCGCTTACACCAGACCACCTTTCCACGCTTTGTGTCAAATCAGCAC TATCGATTGATTTGAACTTTTTTTTTTGGAATTTTTTTTCTGGTGGGGGGATTTTCGACCAATTT AAGTTAAAAATTTAAAACAAACTTTTTTTCAAAAAATAAACTTTTCGGTTTAAAATTATAAGAGT ATTTTAAATAGTTGACTTTTAAAATTCTTTTGCGAAATTTGAAAATATCGAAAAAAAAAAATTCT TTTTCTCCTGTCATATCTTTAATTTGACGACTTTTTCTCGAAAAAATACCAATAAATTCGGTAAA TTTCCGTTTTTAGTGAACAAAAAATACATTTTCTCTGAAAAATAC Found at i:11243459 original size:2 final size:2 Alignment explanation
Indices: 11243446--11243471 Score: 36 Period size: 2 Copynumber: 12.5 Consensus size: 2 11243436 CGTTTCTATG * 11243446 TC TC TT TC TC TC TC TC TC ATC TC TC T 1 TC TC TC TC TC TC TC TC TC -TC TC TC T 11243472 GGTTAGGTTG Statistics Matches: 21, Mismatches: 2, Indels: 2 0.84 0.08 0.08 Matches are distributed among these distances: 2 19 0.90 3 2 0.10 ACGTcount: A:0.04, C:0.42, G:0.00, T:0.54 Consensus pattern (2 bp): TC Left flanking sequence: Indices 11242946 -- 11243445 CAATTTCCAGTGCAATTCGGCAATTTTCCCGTGCAATTTGGCAATTTTCCAGTGCAATTCGGCAA TTTTCCCGTGCAATTTGGCAATTTTCCAGTGCAATTCGGAAATTTTCCATTGCAATTCGGCAATT TTCCAGTGCAATTCGGCAATTTTCCAGTGTAATTCGGCAATTTTCCCGTGCAATTCGGCAATTTT CCCGTGCAATTCGGCAATTTCCAGTGCAAATCGGATGATTTTTCTCGTTTTCTCGCAATTTTTAA AAGAAAACCCAAAGTTTTTCAAAAATTTCAATCGAAATTTGATAATTCGAACCATGCGAAAAAGC GTGAATTTGTAATTCTCTCTGAATTGTTGCAAACCGCGGGTGGGGGGAGTGAAAAACGAGAGAAA GACGCTCCCCAATACAATATAGACACCATCAAATTTAAAGAGACGGATGCGCTTGCTCTGTGTCT CTTCTCTCTCTCTCTCACTTTTTTGGTTGAAGGGACGTTTCTATG Right flanking sequence: Indices 11243472 -- 11243971 GGTTAGGTTGATCGTTCTCTGGTGCACTCTGTCGATTGACGTACTATTTCTTGTGTATGTGTCAC CTCCCCAGTGTCCGTCCGCAGGTTTCTCTTCGCTTACACCAGACCACCTTTCCACGCTTTGTGTC AAATCAGCACTATCGATTGATTTGAACTTTTTTTTTTGGAATTTTTTTTCTGGTGGGGGGATTTT CGACCAATTTAAGTTAAAAATTTAAAACAAACTTTTTTTCAAAAAATAAACTTTTCGGTTTAAAA TTATAAGAGTATTTTAAATAGTTGACTTTTAAAATTCTTTTGCGAAATTTGAAAATATCGAAAAA AAAAAATTCTTTTTCTCCTGTCATATCTTTAATTTGACGACTTTTTCTCGAAAAAATACCAATAA ATTCGGTAAATTTCCGTTTTTAGTGAACAAAAAATACATTTTCTCTGAAAAATACAGGAAAATTC CGTTTTTGGTGTAAAAACCGAATTTTTAATAACAATTTTGTTTAA Found at i:11245210 original size:6 final size:6 Alignment explanation
Indices: 11245199--11245211 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 11245189 TGGCTGACGT 11245199 GTTCGA GTTCGA G 1 GTTCGA GTTCGA G 11245212 CTGGAAGGCC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.15, C:0.15, G:0.38, T:0.31 Consensus pattern (6 bp): GTTCGA Left flanking sequence: Indices 11244699 -- 11245198 ATTTTAGACTCTTTTTTTTCTTTTAATTGTCATTTAAAAAAAACCTGAAATTTCAAAAAAAAAAT CGATTTAAAAGGAGGATTTTTCTTTTAATTGCAAATTAAATATAATTTTCCACATTTCAAAATGC ACGAAAAAAAAATCAAAAATTTAAAAATTCCCAGAAATCGACAGAAAAATGTGTTTTTTTTGTGC GTTTATTTCTATTATTAATTATCGTATCTCTGTATCTCTCTATCTTTTTCACAAAAATCAATCGA TATTCCCATTATCTTAATAATTTTTTACCTTCTTGCAGGTTATACGAACCAATTTATATATTGTA CACATTTGGATGGGCTGATCTCTTTGGAAACACACACCACTCCGTGCTGCTCCAAATTATCACTG CTTTTTTCCTTATTAATTACAAAAAATACAAATATCTATAATAGTACCTAATTAATTTTTTTTGT GATAAAAAATCCACAAAAACACGAAAAAAAAACGATGGCTGACGT Right flanking sequence: Indices 11245212 -- 11245711 CTGGAAGGCCACGAGTCACAGGCATCGCCACAGCGTCATGCGTGAGTTTTTTTTTTTGGGTAAAA ACATACAAATTGTGGGGAAAATCGGTTTTTTGCTTTAAATTTTCTGCGAAAATTGATGAAAAATT GCAGATTTTTCGTATTATAAAGTCAAAATCTGTACAGTTATAATAAAATTGATAAAAATTGAAGT TTCTGTAAAAACTTGTTAAAAACTTTAAAGGTGTTTTCACGAAAAATTTAAAATTTGCACTGGTT TTCAGGTTTTTGTTATCGAAAAAATGCTAAAATTTCGAATATTCCACAAAATTTTTCGGTTTTTT GAAAAAATTCAGATTTTTCCGACAAATTCGAAATCTGCAGTTTTTTGGAGAAAATAATTGCATTT TCAAATTTTCTACAATTATTGTAGAAAACTGGTGAAAATTTCGATTTTTTCCAACTAAAATTGTG ATTTTCTGGAATTTTAGATTGAAAAATGACATTTTCGACTGTCAA Found at i:11247319 original size:6 final size:6 Alignment explanation
Indices: 11247304--11247320 Score: 27 Period size: 6 Copynumber: 2.8 Consensus size: 6 11247294 AACCTGGAAA * 11247304 AATGTC AATTTC AATTT 1 AATTTC AATTTC AATTT 11247321 TTCACTCAAA Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 6 10 1.00 ACGTcount: A:0.35, C:0.12, G:0.06, T:0.47 Consensus pattern (6 bp): AATTTC Left flanking sequence: Indices 11246804 -- 11247303 GTGCAATTAATCCACCAAATGTTCGTGTTGGACCCGAAGATTTTCAGCTTTTGAAAGTTCTTGGC AAGGGAGGATATGGAAAGGTTCGAAAATTGTCGTTTTTCTCAAGAAAAAAATTAAAAATTGTAAT AAAGTTACTAAAAAACTGAAAAAATCCATTTTTAGCACTAAAAATGCTGAATAAATAAAAAATTT TAAAAAAATTAGCAAAAACTCAGATTTGGACTTTTTTGCGAAACTTCTACAGAGAAAACCATGAG AAACGTTGAATTTTCGATAAAAACCTGTAGAAAAACTCCAAAAATCAGCTTAAATGCGAAAAAAT TACAATTTTGCTGCAAAACCCTGTAAAATAATTTCCACAGAAAGTACATTAAAAAAAATAAAAAT CTTACTAGAAATTACTAAAAATTACAATTTTGATATTAAAACCTCTGACTTCCTTTTTTGATTAA AAATTCTACAAATTTCTTTTTTCTTTTCTCTGGAAAACCTGGAAA Right flanking sequence: Indices 11247321 -- 11247820 TTCACTCAAAAAAAGCCCAAAATCGCAACAGAAAAAAAATCAATTTCGCCTAAAAAATTTAAATT CTGTAAACTTCAATTTTTCCCAAAAAAAATGTGCGACAGAATATTAAATATGGTCAAAATCGCCC GAAAAATGTGAAAATTCTGAATTTCCAAAAAAAAAATCCACCTAAACCCTGAAAAAACCTTTTAA ATTATGCGAAAAACGAAAATTACCATTAAAAAGCGGGGGAAAAAACATCAATTTTCAAAAAAAAA CTCCGAAAAAATGAATTCAAAAAATTGAAAAAAAAAACTTTTTTCGTAATTACAATTTTATAAAT TTCATTAAAAAATTTCCAAAATCGTAAAAAATCCAATTCCTACAAAAAAAGTGAAAGTTTTCAAT TTTTTGCAAAAATTAACAGAAAAATCGCCTTAAAAAACAAAATGTTGTAAATTTCAAATTTTTGA GCAAAAACGAAAATAAAATCGAAAAAATTGAATTTTAATACAAAA Found at i:11249492 original size:6 final size:6 Alignment explanation
Indices: 11249481--11249493 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 11249471 TTAAGGAAAT 11249481 GTATCA GTATCA G 1 GTATCA GTATCA G 11249494 ACTTTCAGAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31 Consensus pattern (6 bp): GTATCA Left flanking sequence: Indices 11248981 -- 11249480 AAAAATCGCCGAAAAAAAAAAACTGAAAAACTTAGAAAATTTGCTTTAAAAACTGTTAAATTGGT ATTTTTTAGAAAAAATTGCCAAAAAAAAATTTCAAAAAAATTATGAAAAAAAGAACAGAAAAATA GGCATTTTTCGAAGAAAATGCCGAAAAAGGAAAATTGGAATTTTTTATTCAAGAAATCGCCATAA AAATTGGAATTTTTATCCGAGAAATGCTAAGAAAATCTGAAAAAATCGGATTTTTTCTAAAGAAA TCGCAAAAAAAAAGGTTTTTTTTTTCCAAATAAATGAATTACCAACGAAAAAATCTAAAAATTGA ATTTTTTCGAAGAAATTCTCATAAAATCAGAAAAATTGGATTAAAAAAAAAAAAGAATAATTTAC CAAAAAAATCTGAAAACTTCGAATTCTTAGAGAAAATTTTCTTTAAAATTTAATTTCCGCATTTT TTTGGGAAATTTCTTAAAGCTCCAAAAAAGCAAATTTAAGGAAAT Right flanking sequence: Indices 11249494 -- 11249993 ACTTTCAGAAATTTCCCTAAAATTATGGAAAATTCCAACAAAAAAAAAGGAAAAATGGAATCTTT TGAGGAAATTGTGAAAAAATTGGAATTTTTTGAAGAAAATTCCGAAAAATTGGAATTTATAGGAA ATTGTCGAAAAAAAAGAAAAGAAAAATTGACTTTTTTCAAAAAACTGCTTCAAAAAATCTGAAAA TATATTTAAGAAATTAACAATCTCCAAAAAAAAAAAGTACAATAAAAAATAATTCCAAGCCCGGT AGAGAAAGTCCAATTAAAGAAAAATTACTATAAATTTACCGAAAATTTTCTTTAAAATTTGAAAA AAAGATCAGTTTTTAGCAATAATTTTTTGAATTGCCAATTTACTAAAAAAAATCCCGAAAAAAAT TTAAAAAAGCCTTTTTTATGCAATTTTTCTTAAATTTAAAATTTCTCCAAGTATATGAAAAATCC CAAAAATTTGGAATTTTTTTTCAGGCCAGGAGACCCAGAAACGGC Found at i:11249645 original size:5 final size:5 Alignment explanation
Indices: 11249630--11249648 Score: 31 Period size: 5 Copynumber: 4.0 Consensus size: 5 11249620 GGAAATTGTC 11249630 GAAAA -AAAA GAAAA GAAAA 1 GAAAA GAAAA GAAAA GAAAA 11249649 ATTGACTTTT Statistics Matches: 13, Mismatches: 0, Indels: 2 0.87 0.00 0.13 Matches are distributed among these distances: 4 4 0.31 5 9 0.69 ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00 Consensus pattern (5 bp): GAAAA Left flanking sequence: Indices 11249130 -- 11249629 GCCGAAAAAGGAAAATTGGAATTTTTTATTCAAGAAATCGCCATAAAAATTGGAATTTTTATCCG AGAAATGCTAAGAAAATCTGAAAAAATCGGATTTTTTCTAAAGAAATCGCAAAAAAAAAGGTTTT TTTTTTCCAAATAAATGAATTACCAACGAAAAAATCTAAAAATTGAATTTTTTCGAAGAAATTCT CATAAAATCAGAAAAATTGGATTAAAAAAAAAAAAGAATAATTTACCAAAAAAATCTGAAAACTT CGAATTCTTAGAGAAAATTTTCTTTAAAATTTAATTTCCGCATTTTTTTGGGAAATTTCTTAAAG CTCCAAAAAAGCAAATTTAAGGAAATGTATCAGTATCAGACTTTCAGAAATTTCCCTAAAATTAT GGAAAATTCCAACAAAAAAAAAGGAAAAATGGAATCTTTTGAGGAAATTGTGAAAAAATTGGAAT TTTTTGAAGAAAATTCCGAAAAATTGGAATTTATAGGAAATTGTC Right flanking sequence: Indices 11249649 -- 11250148 ATTGACTTTTTTCAAAAAACTGCTTCAAAAAATCTGAAAATATATTTAAGAAATTAACAATCTCC AAAAAAAAAAAGTACAATAAAAAATAATTCCAAGCCCGGTAGAGAAAGTCCAATTAAAGAAAAAT TACTATAAATTTACCGAAAATTTTCTTTAAAATTTGAAAAAAAGATCAGTTTTTAGCAATAATTT TTTGAATTGCCAATTTACTAAAAAAAATCCCGAAAAAAATTTAAAAAAGCCTTTTTTATGCAATT TTTCTTAAATTTAAAATTTCTCCAAGTATATGAAAAATCCCAAAAATTTGGAATTTTTTTTCAGG CCAGGAGACCCAGAAACGGCGAGCATTCTTCACGGTGGTCACTCGAATTTGTTCGGTCACGGACC AAATAGTGAAGCCCCACAGGCTTTTGGATACGGAATTGGTAGTCAAATGACTACTACTACTGCTG GAGGAGCAGGAATTCAACAGCCATATCAATCATTTAGTGGTGGAT Found at i:11250982 original size:2 final size:2 Alignment explanation
Indices: 11250977--11250989 Score: 26 Period size: 2 Copynumber: 6.5 Consensus size: 2 11250967 AGAAAATTGC 11250977 CA CA CA CA CA CA C 1 CA CA CA CA CA CA C 11250990 CTCTACACAA Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 11 1.00 ACGTcount: A:0.46, C:0.54, G:0.00, T:0.00 Consensus pattern (2 bp): CA Left flanking sequence: Indices 11250477 -- 11250976 CTCAACTTTGCATAAATTTTGATCTAAAAATTGAAATTTTCGCGCGGAAAAATTACAAATATAGC GTGGAAATTGTTTTTTTTTTCCTACCCATGAAAACACAGTTTTTTGTGGAAATTCCATTATTTTT GTGTAGAAAAATATTGAGAAATGACTTTTTGGAATGAAAATTGCTTTAAAAAAATTGATACAAAA GGTGTAAATTTTTTTTAAGAAAAAACATGCAAAAAAGGGTGAAATCAGTGAGAATTGCCGATTTT AAGCCGAAAAAATTCAATTTTTGAGAAAAATGTGTAATAAATTGTAAAAATTAATTTTTCAAAAA AATTGTAAAAATTCGATTTAAAAAAACCGAAAAAAGCGGAGAATTTCCACTTTTTTTTGGAAATT ATTTTTTAATGGAAATTGAAAAAAGTAAAGTTATTTACTAGAAATTTATTTTCACATTAAATTTC ACAACACGAAAAATGTAATACAAGTTTTTTTTTTCAGAAAATTGC Right flanking sequence: Indices 11250990 -- 11251489 CTCTACACAAAATGCTCAATATTCATTCATGCTTCTTCTCCTTAACGTGTCGTTGTTCTTCCACT TTTTCTGAAAATTTTCACACAAATTTTCGAATTTCTTGTATCCATTTTTCGTTCGTTCGTTATTT TTTTTATTAACTTTACACTCTTAATGCCGATTTTTTTAAAAGGCGCTTCATCATCCCACCAGAGA TTACGATCTGTGTGGACCTCCCGCGGGGACCAATTTCATGTGAAAATTTCGAAAAAAATTGATAA TTTTGGCACTTTTTACCCCTAAAATTGAGTCTCGGCAGGGGGGTCGAATAAATACGGAGGTACTT TAATCTCTGGCTTGTTTTCATGTTTGGGATTCTTTTTTCTCTTTTATGCGCTCACTTTTTTTTCG TTCTTTACTCGTTTTTTTTTGTCTTTTTCGTGTAATTTTCCCTGTTAGCTCCCCTTTTTTTCGAT AGAGCGCATTTGCATTTTGGAATTTTCAAAAAAATTTGAAATTTG Found at i:11251111 original size:4 final size:4 Alignment explanation
Indices: 11251102--11251115 Score: 28 Period size: 4 Copynumber: 3.5 Consensus size: 4 11251092 GTATCCATTT 11251102 TTCG TTCG TTCG TT 1 TTCG TTCG TTCG TT 11251116 ATTTTTTTTA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 4 10 1.00 ACGTcount: A:0.00, C:0.21, G:0.21, T:0.57 Consensus pattern (4 bp): TTCG Left flanking sequence: Indices 11250602 -- 11251101 TTTTTGTGTAGAAAAATATTGAGAAATGACTTTTTGGAATGAAAATTGCTTTAAAAAAATTGATA CAAAAGGTGTAAATTTTTTTTAAGAAAAAACATGCAAAAAAGGGTGAAATCAGTGAGAATTGCCG ATTTTAAGCCGAAAAAATTCAATTTTTGAGAAAAATGTGTAATAAATTGTAAAAATTAATTTTTC AAAAAAATTGTAAAAATTCGATTTAAAAAAACCGAAAAAAGCGGAGAATTTCCACTTTTTTTTGG AAATTATTTTTTAATGGAAATTGAAAAAAGTAAAGTTATTTACTAGAAATTTATTTTCACATTAA ATTTCACAACACGAAAAATGTAATACAAGTTTTTTTTTTCAGAAAATTGCCACACACACACACCT CTACACAAAATGCTCAATATTCATTCATGCTTCTTCTCCTTAACGTGTCGTTGTTCTTCCACTTT TTCTGAAAATTTTCACACAAATTTTCGAATTTCTTGTATCCATTT Right flanking sequence: Indices 11251116 -- 11251615 ATTTTTTTTATTAACTTTACACTCTTAATGCCGATTTTTTTAAAAGGCGCTTCATCATCCCACCA GAGATTACGATCTGTGTGGACCTCCCGCGGGGACCAATTTCATGTGAAAATTTCGAAAAAAATTG ATAATTTTGGCACTTTTTACCCCTAAAATTGAGTCTCGGCAGGGGGGTCGAATAAATACGGAGGT ACTTTAATCTCTGGCTTGTTTTCATGTTTGGGATTCTTTTTTCTCTTTTATGCGCTCACTTTTTT TTCGTTCTTTACTCGTTTTTTTTTGTCTTTTTCGTGTAATTTTCCCTGTTAGCTCCCCTTTTTTT CGATAGAGCGCATTTGCATTTTGGAATTTTCAAAAAAATTTGAAATTTGCTTTTTTGCCGGGAAA AATTGACTCAAAACTCGAAATTTTGAAAAAATCTTAATTTCAGCTTTTTAAAAACAATTTTTCTG AAAAAATATCTCCAGAAATTTTTTCAAATTAATCTGAAATTTTGG Found at i:11251949 original size:3 final size:3 Alignment explanation
Indices: 11251934--11251951 Score: 29 Period size: 3 Copynumber: 6.0 Consensus size: 3 11251924 AATGTTTTCT * 11251934 TTA TTA CTA TTA TTA TTA 1 TTA TTA TTA TTA TTA TTA 11251952 AATTTTCTTG Statistics Matches: 13, Mismatches: 2, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 3 13 1.00 ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61 Consensus pattern (3 bp): TTA Left flanking sequence: Indices 11251434 -- 11251933 TTTTTTTCGATAGAGCGCATTTGCATTTTGGAATTTTCAAAAAAATTTGAAATTTGCTTTTTTGC CGGGAAAAATTGACTCAAAACTCGAAATTTTGAAAAAATCTTAATTTCAGCTTTTTAAAAACAAT TTTTCTGAAAAAATATCTCCAGAAATTTTTTCAAATTAATCTGAAATTTTGGGGTAAAAATTACA AGTTTTTCTTTAAATTTTTTTAGGATTTTCCGTGAAATTCACAATTTTTTCTTGAAAAACCGCAC TCTTGGATTTTTTTGTCTTAAATTCAAAAATTTCGATTATAAAATTGCAAAAAAAAACCATTAAA GCAAACGCGCTCCACCGAGAAATCTTCAAGGGATACACACACACTTTATGCCGGGATTACGGTAG TCATTTTTGCTCATTTTTTTTGCTCTCCTTCCCCCAACTCGAACCACTATATTTGCTTCCTACCA ACCCAACCCCTTTCGAGTATTATCTCGTGATATTCAATGTTTTCT Right flanking sequence: Indices 11251952 -- 11252451 AATTTTCTTGTTGTTGTTGTTGTGAACAACCACCTCCCTTCCACCTCCCAAAATCAAAAGTGCCT TTTATAGCTCTGAAAACATTTGCCTTATTTTGTTCGAATTTCTTTTCTGAAAATTAAAAAACCAC CGCAAAAAATCCCATTTTCCACAAAAAAAACCTTTTTTTTGTTAATTTTGGGCCAAATAAAGATG AATAGGTTTGACAATTATCGAGGAGATTCTACCTGAAGAGTGAGTTTTTTTTTAACACAGAGTGT AACAAATCGATCAAATAAAAAAGAAAGATAGCCCCCTTTTGATAAGGAGGACGTCTTCTTTCCAA TGATAATCGGAAACAATCATTCCTTTTTTGAAACAGAAAATCAAAAAATTATTGATTTTTTTTCT ATAAAAATATGGCAACTTTTATGGAAGGAGAAATTATCGAGGAGATTCTACATGAAGAGTGAGTT TTTTTTGAATTTCGGTTAAAATTGGAAAAAATTTTTCACCGAATT Found at i:11251965 original size:3 final size:3 Alignment explanation
Indices: 11251959--11251974 Score: 32 Period size: 3 Copynumber: 5.3 Consensus size: 3 11251949 TTAAATTTTC 11251959 TTG TTG TTG TTG TTG T 1 TTG TTG TTG TTG TTG T 11251975 GAACAACCAC Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 13 1.00 ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69 Consensus pattern (3 bp): TTG Left flanking sequence: Indices 11251459 -- 11251958 TTTTGGAATTTTCAAAAAAATTTGAAATTTGCTTTTTTGCCGGGAAAAATTGACTCAAAACTCGA AATTTTGAAAAAATCTTAATTTCAGCTTTTTAAAAACAATTTTTCTGAAAAAATATCTCCAGAAA TTTTTTCAAATTAATCTGAAATTTTGGGGTAAAAATTACAAGTTTTTCTTTAAATTTTTTTAGGA TTTTCCGTGAAATTCACAATTTTTTCTTGAAAAACCGCACTCTTGGATTTTTTTGTCTTAAATTC AAAAATTTCGATTATAAAATTGCAAAAAAAAACCATTAAAGCAAACGCGCTCCACCGAGAAATCT TCAAGGGATACACACACACTTTATGCCGGGATTACGGTAGTCATTTTTGCTCATTTTTTTTGCTC TCCTTCCCCCAACTCGAACCACTATATTTGCTTCCTACCAACCCAACCCCTTTCGAGTATTATCT CGTGATATTCAATGTTTTCTTTATTACTATTATTATTAAATTTTC Right flanking sequence: Indices 11251975 -- 11252474 GAACAACCACCTCCCTTCCACCTCCCAAAATCAAAAGTGCCTTTTATAGCTCTGAAAACATTTGC CTTATTTTGTTCGAATTTCTTTTCTGAAAATTAAAAAACCACCGCAAAAAATCCCATTTTCCACA AAAAAAACCTTTTTTTTGTTAATTTTGGGCCAAATAAAGATGAATAGGTTTGACAATTATCGAGG AGATTCTACCTGAAGAGTGAGTTTTTTTTTAACACAGAGTGTAACAAATCGATCAAATAAAAAAG AAAGATAGCCCCCTTTTGATAAGGAGGACGTCTTCTTTCCAATGATAATCGGAAACAATCATTCC TTTTTTGAAACAGAAAATCAAAAAATTATTGATTTTTTTTCTATAAAAATATGGCAACTTTTATG GAAGGAGAAATTATCGAGGAGATTCTACATGAAGAGTGAGTTTTTTTTGAATTTCGGTTAAAATT GGAAAAAATTTTTCACCGAATTTATCGATTTTTATTCATGAAAAT Found at i:11257343 original size:3 final size:3 Alignment explanation
Indices: 11257330--11257346 Score: 27 Period size: 3 Copynumber: 5.7 Consensus size: 3 11257320 AGAGAAAGTG * 11257330 AAT AGT AAT AAT AAT AA 1 AAT AAT AAT AAT AAT AA 11257347 GGCAAAAAGG Statistics Matches: 12, Mismatches: 2, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 3 12 1.00 ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29 Consensus pattern (3 bp): AAT Left flanking sequence: Indices 11256830 -- 11257329 GGACACGATTTTCGAAATGAAAAAAATTAGTTTCTTCGTATCATTTTAATGCATATTCTACCGAC AGATCGATCTCGTAAACCGACTCTAGCGCTACAGTAGTCACTTAAAAAATTACTGTAGTTTTCGC TACGAGATATTTTGCGCGTCAAATATGTTGTGCAATACGCATTTTCAAAATTTTGTGTTATAATT AATATTTCTCTCAAAATTGTTAATTTGTTGAGATTACCTCCAAACTTTTCGAAATGTTTGAATTT TGGCCCTAAATTTTTTGAAATCGAGTTTTTTTTCAAAGGCTTTGATTGTTATTTTGCGCCAAAAT GAAAATGCTGAAAACAGAAAAAAAAACAGAATCAAAGTCTTTATATACAAATGAAAATTGTTGTA AAAATCACAGGAAAGTCACAAAAACCATTGAAAAATATCAAAGGGGCCGGGCCGATGGAATAGTA CATACTTATACCCATTTTTGAAAGGAACGATTTGGAGAGAAAGTG Right flanking sequence: Indices 11257347 -- 11257846 GGCAAAAAGGGGAAAAATCAGAAAAATCAATAAATCTAAAAAATATCGGGGCACTTTTCCCAATT CTGTTGCTCTTTTGCCTCCCAGTAGCCGCCTTTAAACTGATGAATTAGGGCTCCATTTGACTCAT CTTGGACACGAACAAACCATGTTGGCTCGTACTCTTCATATTTGTCCCCTGTAATCATAATTGAT TATTGGGAAAAATTCGAAAAGTTGAAAATTTGAAAAAAAAAATTTTTTTTTTTGCACATTAATTT AATAGATATAAGTAGTAAGTACTAAATAATTCGCTGTAAGACTTTATAATTTTTGAAATCTTTTA AATTAGAGTGACATATGGGTACGGTCATGTTTTTATTTTCCGGCAAATCGGTAAAATTGCCGGTT CGCCGGAAATTTTCATTTTCTGCAAATTGCCCGTTTGCCGATTTGCCGGAAATTTTTAATTCCGC CAATTTTCCGGTTTTCCGGAACTATTCATTTTCTGCAAACTATCA Found at i:11259164 original size:6 final size:6 Alignment explanation
Indices: 11259153--11259165 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 11259143 TTTTTGGCGG 11259153 TAAATT TAAATT T 1 TAAATT TAAATT T 11259166 TCTGAAAAAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54 Consensus pattern (6 bp): TAAATT Left flanking sequence: Indices 11258653 -- 11259152 CCTAAGCCCAAGCCTAAGCCTAGGCCTACCCCTTTGCCTGACCCTAAGCCTAAGTCTAAGCCAAA CCCTAAGCCCAAGCCTGAACCTAAGCCTAAGCCTAAGCCTAAGCCCAAAGCCTAAACCTTCAAAC CCCTCACCTTTCTCGGCTGTTCTCTACTAAAATACGAGTATGGCACAAATTTGAGCAGACACTTC TCATTCGTCTCATGATTCGTAATTTCCATATCTCCATGATTATCAATCCATAGCTTTCCGACAAT TATATTGTGTACGGTCGTCGTGATTTTTCGATATGAAAAGTGCGATTTTGTGGCTGGAAATACGA CATGCGTGAAGCCAATCGGAATCACTGAAAGATATTTTCCACGGAATCGTGACGTCATCGTGAAA TCCTGATACATTGTCCATCCGTTGCCTTCGGCGTGGTGAGCTGCTGCAGGTGGGTGGTGGGATAC CTCAAAAAATATATAGAATTGAAAGACGGAGGAAATTTTTGGCGG Right flanking sequence: Indices 11259166 -- 11259665 TCTGAAAAAAAATATTTTGGCGGCACGTGGTGTCAGAGTGTGTCATTTCGGTTTGATCTACGTAG ATCTACAAAAAATGCGGCAGATTTCTCAACTAATTTCGCATGGTTAAGAACGTGCTGTCGTAACA TTTTTTTTTGGGCGAAAAATTCCCGCATTTTTTGTAGATCAAACCGTGATGGGGCAGCCTGGCCC CACGTTTGGCGGGAAATTCAAATTTTCTGAAAAACATTTTTTGGCGGGAAATTCAAATTTTCTGA AAAAATATTTTGACAAAGAAATTTTAAATTTGAAAAAATATTTTGGCGGGAAATTCAAATTTTCT GTGAAAATTAATTTTTGGCGCGAAATTCACATTTTTCGGAAAAAACATTTTGGCGGGATATTCAA ATTTTCTGAAAAAATATTTTGGCCGAAAATTCAAATACCCTGGAACAATATTTTGGTGAGAAATT CAAATTTTCTGAAAAACATTTTTTTGGCGCGAAACTCAAATTTTT Found at i:11259980 original size:4 final size:4 Alignment explanation
Indices: 11259964--11259980 Score: 27 Period size: 4 Copynumber: 4.2 Consensus size: 4 11259954 TATTTCAAAG * 11259964 TATT TAAT TATT TATT T 1 TATT TATT TATT TATT T 11259981 TAAGTATTCA Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 4 11 1.00 ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71 Consensus pattern (4 bp): TATT Left flanking sequence: Indices 11259464 -- 11259963 TATTTTGGCGGGAAATTCAAATTTTCTGTGAAAATTAATTTTTGGCGCGAAATTCACATTTTTCG GAAAAAACATTTTGGCGGGATATTCAAATTTTCTGAAAAAATATTTTGGCCGAAAATTCAAATAC CCTGGAACAATATTTTGGTGAGAAATTCAAATTTTCTGAAAAACATTTTTTTGGCGCGAAACTCA AATTTTTTGACAAAATATTTTGGCGGGAAATTCAAATTTTCTAAGAAAACGATTTTGGTCGGAAA TTTTTGATTTTCTAAATAAAAACTTCTAGTCTACCTGCTCAGTAACACTTCTCCATCCCAAATCG TCCATTCGATCAAATTCAAAAGTCTCGCCGAGCAACGGATTGAAGGGCTTATTGGTCCGGTGACA CGTCGTCGAATAGTTGCTCGCGGCGTAGGCGGCCACGTAGCACATCTGCTCGAGTGTCGACTGGA AATTGAAAAAATTTTTTAAAGTACAGATTTTTCAATATTTCAAAG Right flanking sequence: Indices 11259981 -- 11260480 TAAGTATTCAAAAAAACTCTTTTTCCTACCAATTTCGCGCCGGTTTCCAACAAATTCGCGTATTC CAAATCTTCAGTGACACGTTGCAGCACGGAAATTGGCTCGGAAAAATTAACGGGCATCGGGATTT TCGAGAGCTCCTGAAACGACAAAATATGTAGGGTTACTGTAGTTTTGTTTTTGGGAGCAGCTGAC ATTGGTGGGGTTCTCAAGGAATACTAGTGGCTAGCAGCTGACAAGTCACGGGTCTCGAGCAATTT TTTTTTCGATTAAAAATTTGATTCCTAGGTATGTTATGGTCATATAGAAATCGATACTGCACAGG AAATTTGATCAAAAAAAAAAGAAAGAAAAGAAAGCAGCCGACACCTTACTGGATAATGTTTATGG CCTATCAATAGCAGGTTGGCGCCTAAACTAGCAGCCGACACTTCATGGGTCTGAATTTCAGTTTC ACGACGAGCGGCAGACATTATATGGGAATGTGTTTAGCAGCCGGC Found at i:11260335 original size:5 final size:5 Alignment explanation
Indices: 11260317--11260338 Score: 30 Period size: 5 Copynumber: 4.6 Consensus size: 5 11260307 AATTTGATCA * 11260317 AAAAA AAAAG -AAAG AAAAG AAA 1 AAAAG AAAAG AAAAG AAAAG AAA 11260339 GCAGCCGACA Statistics Matches: 15, Mismatches: 1, Indels: 2 0.83 0.06 0.11 Matches are distributed among these distances: 4 4 0.27 5 11 0.73 ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00 Consensus pattern (5 bp): AAAAG Left flanking sequence: Indices 11259817 -- 11260316 CGAGCAACGGATTGAAGGGCTTATTGGTCCGGTGACACGTCGTCGAATAGTTGCTCGCGGCGTAG GCGGCCACGTAGCACATCTGCTCGAGTGTCGACTGGAAATTGAAAAAATTTTTTAAAGTACAGAT TTTTCAATATTTCAAAGTATTTAATTATTTATTTTAAGTATTCAAAAAAACTCTTTTTCCTACCA ATTTCGCGCCGGTTTCCAACAAATTCGCGTATTCCAAATCTTCAGTGACACGTTGCAGCACGGAA ATTGGCTCGGAAAAATTAACGGGCATCGGGATTTTCGAGAGCTCCTGAAACGACAAAATATGTAG GGTTACTGTAGTTTTGTTTTTGGGAGCAGCTGACATTGGTGGGGTTCTCAAGGAATACTAGTGGC TAGCAGCTGACAAGTCACGGGTCTCGAGCAATTTTTTTTTCGATTAAAAATTTGATTCCTAGGTA TGTTATGGTCATATAGAAATCGATACTGCACAGGAAATTTGATCA Right flanking sequence: Indices 11260339 -- 11260838 GCAGCCGACACCTTACTGGATAATGTTTATGGCCTATCAATAGCAGGTTGGCGCCTAAACTAGCA GCCGACACTTCATGGGTCTGAATTTCAGTTTCACGACGAGCGGCAGACATTATATGGGAATGTGT TTAGCAGCCGGCAATATGCAGCCGACAGTTTGCAGGTATTTTGGTTACTGTGAAAGCTAGCAGCC GACGTTCGAAGATGCAGCCGACACCTAATGGGTTACTGTTTCAAAGAGTGCATCCGACAATTTAC GGTTCTGAAGTGCAGTTCCACGGCCGACATTCTACTAGTTCATATTAAAAACACTTTTAGCCAGC AGCCGAGACTTCACGGGTCTCTGTTTCAAGGATTGCAGTCGACACTCTCTCACCTTCCCAATACA ATTCTTCATGATCGACCATAAGTTGATCGGCAAATTCGGCCGCTCGGGCACCGTCGTCCTTCTCT GTCGTCCTCCCTTATGTGCTCCGACGACTACTACTGCTCCAGAAT Found at i:11262246 original size:2 final size:2 Alignment explanation
Indices: 11262234--11262249 Score: 25 Period size: 2 Copynumber: 8.0 Consensus size: 2 11262224 CCAGTTTTAC * 11262234 TG TG AG TG TG TG TG TG 1 TG TG TG TG TG TG TG TG 11262250 GACATTGCCA Statistics Matches: 12, Mismatches: 2, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 2 12 1.00 ACGTcount: A:0.06, C:0.00, G:0.50, T:0.44 Consensus pattern (2 bp): TG Left flanking sequence: Indices 11261734 -- 11262233 TAAAAGTATGCTCTCTAATAAAAAATTGATTTTTTTTTTCAAAAAAAAAAAAGGTATAATTTCAT ATTTAGTTTTATAATTTCATAGATTGCTTAATAAACATTAGAAATTATTGAAGCATTCATTCCTA CATTATTCTTAAAATTCCGAAAAATTTTACAGAAAAAAAAATAGGTGACCGCTAAAACACATATC TATGTAGAAAATTCTAGAAAATTCCTTAAAAAAAACCTCCTAAAAATCCAGTTTTTCGCGTCTAA AATAGAGTCTTGCCAACAATTTAAAACGGTCACATGTTTTAAAAACGTTTGCCATCCGTTGAAAA ATGGACGATCTAATTAGACAAAAAAGAAGACGATTGTAAAATTAAGTGAAAGTTAATGGGCCGTA AATAGTTAAAGAAAATAAATTTTCTACAGCGAAAAAAAAATCAAATTCAAAAGAGATTACAAAAA GTAGAATTCTTCTTGATCATATGGAATACGAAAAACCAGTTTTAC Right flanking sequence: Indices 11262250 -- 11262749 GACATTGCCAGCACTAGCCAAGTAAAAGTTCTTTGTATTTAAAGAAGATATTACATTGGTTAGTA GGAGAAGAGGAATAGAGAAATAAGAACTGGCCTGTCAAATTGTGTAATTTTAAAAAAATATGGAA AAGTTTTAACTTTCTACATGAAATAGTGATATACATAGGAAATATAGTAAGTAATGACCATACTG TTACTAAAATTGCCAAAAAAAAAACTAGAATTAGAAATTTGTATTCAATGTCGAACACGTGGTGT CAAAGTGTCTCATTTCGGTTTGATCTACGTTGATCTACAAAATATGCGGGAGAAGAGACGCAGAG TTCTCAACTAATTTCGCATGGTTAAGAACGTGCTGACGTCAAAAATTTTTTTTGGGAAAAAAATT CCAGCATTTTTGTAGATCAAAGCACCACGTGGTCAAATAGTTTTGAAATTGCAAAAAAAATTACA AAAATTGCCAAAGTTAAAAAAAAACTGCCAAAAAGTTACTGACAT Found at i:11263715 original size:5 final size:5 Alignment explanation
Indices: 11263705--11263717 Score: 26 Period size: 5 Copynumber: 2.6 Consensus size: 5 11263695 TGTGAATCTA 11263705 ATTAC ATTAC ATT 1 ATTAC ATTAC ATT 11263718 GAAATACACA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 8 1.00 ACGTcount: A:0.38, C:0.15, G:0.00, T:0.46 Consensus pattern (5 bp): ATTAC Left flanking sequence: Indices 11263205 -- 11263704 CTCCCATATGGGAAAGAGATGGCAGAATGCGATAACTTACGCCAGATCCTCTTCGGCATCGTGAA ATTCGTCGTCCTCCTGATCACTGTACACGGATACTGGAGCAGCGCCACGTGCACATTTCGAGGCG GCTCGTTCCAGTGATGAGTGTTGTTTCGCGAGTGCTTCCAGTTGCTCCTGAAACGTAAATTTCAT TTTAGACAGACAGCCCAGTATAGCAATTTTTCAAAAAAAAATTTCCCGTGAATTACATAGTTTCG ACAATTTTGTTCTTATTTGCACACGTGGTGCCAGGTTGGGTTCCCATTACGGTTTGATCTACAAA AAATGCGGGAATTTTTTGCCCAAAAAATGTGACGTCAGCACGTTCTTAACCATGCGAAATCTCAG TTGAAAAGTCTGCGCCTCTTCTCCCGCATTTCTTGTAGATCAACGTAGATCAAACCGAAATGAGA CACTCTGACATCACGTGTTTGTAGACTAGAACAATTGTGAATCTA Right flanking sequence: Indices 11263718 -- 11264217 GAAATACACACTTTGAAAATTTGAGAAACTGAGCAAAAAGTGTAGTGACTATTTGTCAAAATTAA CTTGAAATGGGTAGTATAACCCAAATAAATTAATAAATTTTCATTCCAGAAAATGTCGTCCAAAA AAAAAAAAAATGAGACTTTAAAAATTAAAAATTGTTGCTAATCGAAAAAATTTGAATCAAACGCT GTTTATTTCAGATTTCTCGAAACTGGGAATTTTATAATTAATGTTACATATATATGCTGTTTTAT TTATTGGTATGTGTTGATTTTTTTAAAAATAATTTATACCAAAAAAACGATTGAATTACGGAATT TCAAAGGCAATACTTATTCGAATGATGTATACTAACATCGCTAAAAAAAATCACACAATTATCCA AAAAGCGTTGCACACGTTTTTGCGCACCAAAAATAGAAACAACGATTAGTGTTTCTCTTTTTTTT TTCGTTTCCCATAGCGACGGCCAGGAAGTGAGCTTTTGATTTTTT Found at i:11263871 original size:1 final size:1 Alignment explanation
Indices: 11263844--11263857 Score: 28 Period size: 1 Copynumber: 14.0 Consensus size: 1 11263834 AATGTCGTCC 11263844 AAAAAAAAAAAAAA 1 AAAAAAAAAAAAAA 11263858 TGAGACTTTA Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 13 1.00 ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00 Consensus pattern (1 bp): A Left flanking sequence: Indices 11263344 -- 11263843 AGTGATGAGTGTTGTTTCGCGAGTGCTTCCAGTTGCTCCTGAAACGTAAATTTCATTTTAGACAG ACAGCCCAGTATAGCAATTTTTCAAAAAAAAATTTCCCGTGAATTACATAGTTTCGACAATTTTG TTCTTATTTGCACACGTGGTGCCAGGTTGGGTTCCCATTACGGTTTGATCTACAAAAAATGCGGG AATTTTTTGCCCAAAAAATGTGACGTCAGCACGTTCTTAACCATGCGAAATCTCAGTTGAAAAGT CTGCGCCTCTTCTCCCGCATTTCTTGTAGATCAACGTAGATCAAACCGAAATGAGACACTCTGAC ATCACGTGTTTGTAGACTAGAACAATTGTGAATCTAATTACATTACATTGAAATACACACTTTGA AAATTTGAGAAACTGAGCAAAAAGTGTAGTGACTATTTGTCAAAATTAACTTGAAATGGGTAGTA TAACCCAAATAAATTAATAAATTTTCATTCCAGAAAATGTCGTCC Right flanking sequence: Indices 11263858 -- 11264357 TGAGACTTTAAAAATTAAAAATTGTTGCTAATCGAAAAAATTTGAATCAAACGCTGTTTATTTCA GATTTCTCGAAACTGGGAATTTTATAATTAATGTTACATATATATGCTGTTTTATTTATTGGTAT GTGTTGATTTTTTTAAAAATAATTTATACCAAAAAAACGATTGAATTACGGAATTTCAAAGGCAA TACTTATTCGAATGATGTATACTAACATCGCTAAAAAAAATCACACAATTATCCAAAAAGCGTTG CACACGTTTTTGCGCACCAAAAATAGAAACAACGATTAGTGTTTCTCTTTTTTTTTTCGTTTCCC ATAGCGACGGCCAGGAAGTGAGCTTTTGATTTTTTGTTTTACTATTAGAGTTTATTGTACCTGCA AAAGAGCCTTCTCCTTTTGCTCCACCGCAACAATCTTGTTGAGCCGTTTCGCTGATTGCTCGGAG AGCTCAACAAACTCTTCGGCTGCCTGGAGCACGGCTGACGTTGTC Found at i:11265427 original size:6 final size:6 Alignment explanation
Indices: 11265416--11265428 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 11265406 GCCATTTGAG 11265416 CATCCT CATCCT C 1 CATCCT CATCCT C 11265429 TTCTGGAGCC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.15, C:0.54, G:0.00, T:0.31 Consensus pattern (6 bp): CATCCT Left flanking sequence: Indices 11264916 -- 11265415 TTTGTAGATCAACATAAATCAAGCCGACATGGGACACACTGACACCATGCTTAAAGTGACGTCAT GACACCATGCTTAAAGTGACGTCATGCAAGACTAATGGAGGAACTACGGTAAATGGATTTGTATC TAGTCTGAACTACAGTAACCAAGGGGATCCGTTTTTAGAGAAAAAATATTCGGTTTTTTCTCGTC AAACCAACATATTCTAGATAAATCTATAATTTTCACGTCATTTTCCGTATCTCTAACCTTTAACA AATCAGCTCTCTCGGCCAACGAATTCTTATCCGTCTCAACTGTCCCATTCAATGCTCGCATTAGC TCGTCACCTTGCTTATCTTCAAAAAAATCGATTTTTTTTTCTCAAAAAAAAAACATTTGAAAAAC CCTACTCATCATATTGGCGGCTGTACGCAAATCACATAGTTTTCCAGACATTTGACGATTCGCCA GAATTAGGGCATCCGATCGATTCGAGTCGGTTTTCGCCATTTGAG Right flanking sequence: Indices 11265429 -- 11265928 TTCTGGAGCCGCAAAAAATCGGGTATTTATTGGGATTTTTATTCAAAATTTGTGATAATAATATC AATTGTTTCTATTTTTTAATGAGACACGTTATAATGTTTAGCAAAAAAAGTTTTGCTCGAATCGT TTTTTCAAACAAATTCAAAATTCTAATGTTTTAGAAATTTTCAGATTTATAAGAGCATTTATTAA AAATAAAATTATATACTTTTTAAATTTTTAAAAAGTCCCCATTTTTCACTTTTTTCCATGAAATG TAAATTTCGTTCACTTCCTTTTTTTCAAAATTTTCCCTTTTTCAGAAAATTTCAAATTTCAAACT TTTTAGGCATATTCAGTCAAAAGTAGCTATGTTTCAATTCTAAAAAAAAAACTGAAGACTCTGAA AAATTCCGATTCATCGGGGTTTCAAGGCGTTTAAAAGTTACTATCACATTTCTAAAAAAATTTTC ATTCAAATTTTTCAGATGCTGTTACGCTTTTGTGAATAATTCAAA Found at i:11266800 original size:4 final size:4 Alignment explanation
Indices: 11266791--11266803 Score: 26 Period size: 4 Copynumber: 3.2 Consensus size: 4 11266781 CACTACAGAC 11266791 ATCA ATCA ATCA A 1 ATCA ATCA ATCA A 11266804 ACGAATGAAA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 4 9 1.00 ACGTcount: A:0.54, C:0.23, G:0.00, T:0.23 Consensus pattern (4 bp): ATCA Left flanking sequence: Indices 11266291 -- 11266790 AACTTTCTGAAAACAACTTATTTCTATATTTTACGAAAAATTAAAATTTTTAAAAAATTTTCATA CAACTTATAATAATAGTAGTAAATAATAGTAATTCCTAGTTTTGGCATTTACAAAAAAATTTAAA AAATTGGAATTTTACGAAATTTCCAGAATTTCATAATAGTATTAATTGTTTTGAAATTTAAAAAA ATGTTACGTACATTTTTTCGGAATTTTTTAAAAAGGTGTATATAATTTATAAGAGTAAATGCCTA CAGTTAGCTATATTAATGATTTTTTTCTCTAAAAAAATAATTTTTTTCCGGAATGTTTTAGACTT TTTATATGACTTACAAAAGTACAAAACAGCAAATACTCATTTTAAAATATCTTTTTTTTTGATAA TTCCAAAATTTTCGAAATTTCCAAAACAATTGAACTTTTTTAAAGTTAATTTTGTTTTATATCAG AACAGTTTTTTCTCCAATTTTTTTTCTTCAATTTTCACTACAGAC Right flanking sequence: Indices 11266804 -- 11267303 ACGAATGAAAAAAAAACCTTATCAGTATGAACTCGAGCTTCTTGCAGGTTGATACTTCCACGACA CGTATGACCAACTTCACTTGGGTTTCTGTAAAATTTTTGAATTTCGGGGCCAAAATGAAAATTCG GATTCTGGTATTTTCAACGCGAATTGAATTTAAAAATTTTGGTATATTTTCTAAAGTTTTCGCCT TTTTGAGTTCCAAGAAAATTAGAGCTTGCTCCAGCTCCTCGAGAAGCAAGCGAATATTCACCTCT CCTGAAGCCCAAAAAGCTTCTCCGAGTCCCCACACGCCGACTCATAGACACTCTCATCATCCCGA TGATGAGCCTTTCGACGGGCTCTCACCGGGAACGCACACCAGGTGATCTGCTTGCGCGCCTGACG AAGACGTCCGCGAAGTGTGCCCATTATTCGACGGTGGATTTTTGTCGACTTTTGTAGTGGTGGTG GAAGTGATGATGGGCTCAAAGAGCTCAGCGAGCAATAGGTAGAAG Found at i:11267876 original size:6 final size:6 Alignment explanation
Indices: 11267865--11267877 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 11267855 AACTCTGTAC 11267865 ATTTAA ATTTAA A 1 ATTTAA ATTTAA A 11267878 ATTGTGTAAC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46 Consensus pattern (6 bp): ATTTAA Left flanking sequence: Indices 11267365 -- 11267864 AGGATCCTTATCGCCACTCTTCTCTGCCTTCTCTTCGTCTCTCCTTATCTCTCCATTCCCCCCAT TTTGCCTCCTTTTGCTGATGTCGTCGTTCTCCTCGTTGCTATCAATTTTCGCCCGCCGCTTTTTC TCGTTTTTGCCCGATATTCCACTGGCAGCTGCTTTTTGCATATCGTCCAACATTACACAATGATT CGGGACCATTTTTGAAGCATCGCTTTTCCCTTCTACAATGTATACAATGGTAGATCAAAATCTTT CGGGCGGAAAGGAAATTAGGTCGATGGATAGAATATAGTTACGAAAAGGTTCAAATTCCAAACAA AAAAAGAAGAGGAATGAATGAAAAATGCCTATCATAGGACATTGCGTATGTAGAAATGTTGTTAT CAATATTGATTAGAAAACAATATATTTACACTATTGGTGTATGGCCTTCCTTTAAAATGCTAAAG GGGGCTTTTTTGGCATATTGGCAACTAATAGAAGAAACTCTGTAC Right flanking sequence: Indices 11267878 -- 11268377 ATTGTGTAACTAATTAGCTATTTGGTATTGCACCTTGATAACTATTGTCAACTGACAAAATGTAG TTACTTTATGTTATGGAGTAACTATTTTTCTATTGTTTCGCAGTTAACTATTTAATGATAACATT AAATTGAACCGTCGGGCGCAATAATACTAATAAAGATCCTCTATAATAATCTACTAATCATTAAC TATGTATAACAGAATATACTAGCATACTAATATACTATTATTGCTATTACTACTACAGATACATA TGATATCAAAGCTTTACAGTAGTCGGGTGCAATACTAATAGCGGTAATACGGTACTTGAATTAAC AAATTAGCCACGGAATATTTGGAATGTCCATATTCCCATTTAGAATATACTACTAATATACTATT ATTACTAAACAGTACTCATATTTTAATAGTATTTTAATAGTTTTAATAGTAATTTTTGCAATACC ACGTGACAGAGGTGACTGAAAAGTTTATAACTCTATTTTCAGCGA Found at i:11269776 original size:2 final size:2 Alignment explanation
Indices: 11269771--11269789 Score: 38 Period size: 2 Copynumber: 9.5 Consensus size: 2 11269761 CAAAAAAATC 11269771 CA CA CA CA CA CA CA CA CA C 1 CA CA CA CA CA CA CA CA CA C 11269790 GAACCTATAA Statistics Matches: 17, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 17 1.00 ACGTcount: A:0.47, C:0.53, G:0.00, T:0.00 Consensus pattern (2 bp): CA Left flanking sequence: Indices 11269271 -- 11269770 GGACTACAAGCTACGAAATAATCGTACTTGGCGTTATGGTATATGAGTCAGTTATTTGTATGTGT TTGCACACAAACAGATAGACGAACTGCACACAAATTCTATGCTCTGGTAGAAGAGGGTGATATCA GACGGAAATTGCCAAAAAAGGGACAAACTCGGTAAGTACTTCAGAAGATGCTGATCTACCGAAAA ATCAGGTATTCATGATTTCGGAATTATTGCGGAAATATCCGAATAGTTGGAAAATTCAAATTTCA GCACATTGGCAACTTTTCGCGTTTTTTTCCAGATTTTACACGTGGTGCTAGACTGTCCCATAACG GTTTGATCTACAAAAAATGTGACGTCAGCACGTGCTTAACCATGCGAAATCAGCTGAGAACTTTG CCCGCATTTTTTGTAGATCAACGTAGATCAAACCGAAATGAGGCACTCTGACACCACGTGATTTA ACTAAATTTAAACGAAAACTTTTTCAATTTCTCCACAAAAAAATC Right flanking sequence: Indices 11269790 -- 11270289 GAACCTATAATAACTGAGTGTGGCGTTCGAGTCGAGTACAAACCACCGCTGCCGGTATCCTTTCA AGTAGTTTGTCCATTTGTTCAACCATCCAGCTTTTTCGACCGATCTGGAAACGAATATGTTAAAA TTTCGGAAAGTTTTAGATCTTTTTAAATTTTCGATTAAAAATACAAAAATATAAAGTAAGACAAT TACCTTGCGCTGAGAAATGGATGAAACGACATATCGAGTTTACTATGAAAATTACTATGAAATTA CTATGAATTACTATGAAAATAAGGAATGAAATTTTCAAAATTTTTTTTTCGAAATTAATTTAATT TTTTCGCACGTAATTTTAATTTAATTTTTTCGTAATTTCCGTTAAATTATCGATTTTACGGGAAA AAACAGTCGATTTTTAATTTTTGTTTTAAAAAAATTATTCCTATTATTATTTTAGGCATTTACTG TGATTTTCGAATTTTTTTTGTAAAAATTTCCCAACGCTCACGGGG Found at i:11270136 original size:6 final size:6 Alignment explanation
Indices: 11270125--11270142 Score: 29 Period size: 6 Copynumber: 3.2 Consensus size: 6 11270115 TTTTCGCACG 11270125 TAATTT TAA-TT TAATTT T 1 TAATTT TAATTT TAATTT T 11270143 TTCGTAATTT Statistics Matches: 11, Mismatches: 0, Indels: 2 0.85 0.00 0.15 Matches are distributed among these distances: 5 5 0.45 6 6 0.55 ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67 Consensus pattern (6 bp): TAATTT Left flanking sequence: Indices 11269625 -- 11270124 ACGTGCTTAACCATGCGAAATCAGCTGAGAACTTTGCCCGCATTTTTTGTAGATCAACGTAGATC AAACCGAAATGAGGCACTCTGACACCACGTGATTTAACTAAATTTAAACGAAAACTTTTTCAATT TCTCCACAAAAAAATCCACACACACACACACACACGAACCTATAATAACTGAGTGTGGCGTTCGA GTCGAGTACAAACCACCGCTGCCGGTATCCTTTCAAGTAGTTTGTCCATTTGTTCAACCATCCAG CTTTTTCGACCGATCTGGAAACGAATATGTTAAAATTTCGGAAAGTTTTAGATCTTTTTAAATTT TCGATTAAAAATACAAAAATATAAAGTAAGACAATTACCTTGCGCTGAGAAATGGATGAAACGAC ATATCGAGTTTACTATGAAAATTACTATGAAATTACTATGAATTACTATGAAAATAAGGAATGAA ATTTTCAAAATTTTTTTTTCGAAATTAATTTAATTTTTTCGCACG Right flanking sequence: Indices 11270143 -- 11270642 TTCGTAATTTCCGTTAAATTATCGATTTTACGGGAAAAAACAGTCGATTTTTAATTTTTGTTTTA AAAAAATTATTCCTATTATTATTTTAGGCATTTACTGTGATTTTCGAATTTTTTTTGTAAAAATT TCCCAACGCTCACGGGGTTCTGGCCTTCCTCATTGAATTATTCGCGCTCTATTGGCAATCGCCTG CCGGACAACGCGTGGAAAAGTGTCGTGTACTCCACACGGACAAATACATTTAGTTTTACAACTAA AATCGAGCCGCGACGCGACACGCAACGCGCCGTAAATCTACCACAGATATGGCCGAGCCAAAATG GCCTAGTTCGGCACAAACTCTTCCATTTCAATTAGTGAGGGAAGCCAGAACTCCGTGAACGCTTT CAGAAAAAAACCCCTTACGCCAAGTGCTCAAAATTATTGATCGACGAAAGCGATGCGGCTCTTCT CGATTTGCCGGACGAAGTCGATGACATTATATTATTATTATTACT Found at i:11270139 original size:5 final size:5 Alignment explanation
Indices: 11270129--11270141 Score: 26 Period size: 5 Copynumber: 2.6 Consensus size: 5 11270119 CGCACGTAAT 11270129 TTTAA TTTAA TTT 1 TTTAA TTTAA TTT 11270142 TTTCGTAATT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 8 1.00 ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69 Consensus pattern (5 bp): TTTAA Left flanking sequence: Indices 11269629 -- 11270128 GCTTAACCATGCGAAATCAGCTGAGAACTTTGCCCGCATTTTTTGTAGATCAACGTAGATCAAAC CGAAATGAGGCACTCTGACACCACGTGATTTAACTAAATTTAAACGAAAACTTTTTCAATTTCTC CACAAAAAAATCCACACACACACACACACACGAACCTATAATAACTGAGTGTGGCGTTCGAGTCG AGTACAAACCACCGCTGCCGGTATCCTTTCAAGTAGTTTGTCCATTTGTTCAACCATCCAGCTTT TTCGACCGATCTGGAAACGAATATGTTAAAATTTCGGAAAGTTTTAGATCTTTTTAAATTTTCGA TTAAAAATACAAAAATATAAAGTAAGACAATTACCTTGCGCTGAGAAATGGATGAAACGACATAT CGAGTTTACTATGAAAATTACTATGAAATTACTATGAATTACTATGAAAATAAGGAATGAAATTT TCAAAATTTTTTTTTCGAAATTAATTTAATTTTTTCGCACGTAAT Right flanking sequence: Indices 11270142 -- 11270641 TTTCGTAATTTCCGTTAAATTATCGATTTTACGGGAAAAAACAGTCGATTTTTAATTTTTGTTTT AAAAAAATTATTCCTATTATTATTTTAGGCATTTACTGTGATTTTCGAATTTTTTTTGTAAAAAT TTCCCAACGCTCACGGGGTTCTGGCCTTCCTCATTGAATTATTCGCGCTCTATTGGCAATCGCCT GCCGGACAACGCGTGGAAAAGTGTCGTGTACTCCACACGGACAAATACATTTAGTTTTACAACTA AAATCGAGCCGCGACGCGACACGCAACGCGCCGTAAATCTACCACAGATATGGCCGAGCCAAAAT GGCCTAGTTCGGCACAAACTCTTCCATTTCAATTAGTGAGGGAAGCCAGAACTCCGTGAACGCTT TCAGAAAAAAACCCCTTACGCCAAGTGCTCAAAATTATTGATCGACGAAAGCGATGCGGCTCTTC TCGATTTGCCGGACGAAGTCGATGACATTATATTATTATTATTAC Found at i:11271839 original size:6 final size:6 Alignment explanation
Indices: 11271828--11271840 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 11271818 CAGAAATCCG 11271828 TGAAAA TGAAAA T 1 TGAAAA TGAAAA T 11271841 ATGAAGAAAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.62, C:0.00, G:0.15, T:0.23 Consensus pattern (6 bp): TGAAAA Left flanking sequence: Indices 11271328 -- 11271827 TAACACTGAAAAGTGATTTCCTTTATTTTTTGTTACTTTAAAGTCGATTTCATAGTTTTTAATTA CGCATACATTGTTCACATGACTGTAAGGAAGGTGGAGAAAAAAGAAATTTCAAAATTAATTGAAA AATAGAGGCCCTGCGTAAAAAAGTAAAATCAACCAAAAATTGCGTTTTTCTCCAAATTTTCATGT TCATCATTCGTTTTCGGTATAAAACTGTTTTTCATTTAAAATGTAGTCTTTGATTGAACCTTATA AAATCACGGGGTTCTCGCATTTCTCATTGAATTTTCGCGCTCCATTGACAATCGCCTGCCGGACA GCGCGTGGAAAAGTGTCGTGTACTCTACACGGACAAATACAACAGTTTCACAACTAAAAACGAGC CGCGACGCGACACGCAACGCGCCGTAAATCTACACAAAATCTCTCCGACCCAAAATGGCCTAGTT CGGCAAACTCTGCCATTTCGATTTATGAGGGAAGCCAGAAATCCG Right flanking sequence: Indices 11271841 -- 11272340 ATGAAGAAAAAACACAAAATTTAGCGTTTTCGGATTTGTCTCAAAGCCCCACGCGCTGCACGAGT TTTGCGCCAGCAAATCAATTTCCAGCTGAGGAGACAGTGAAATTTAGCAAAAAAAGTATCGCTGT TCGAGCCCGTAAATCGACACAAGCGCTACAGTATTCATTTAAAGGATTACTGTAGTTTTCGCTAC GAGATATTTTGCACGTCAAATATGTTGCGCAATACGAATTCTCAGAATTTTGTATTCCCGTAATC TTTTTTTTCATAATTTGAAAAGTTTTCCGTTGTTTTTCCGCTAAAAAAATCAGTAAATCACGTAT TTTAAGCCAATTTGAGAGGTTTCAGCGAATTTTTTTTGCGGAAAACGTCGGGTATTTCAAAATAT TTTAGCCGTTTGAAATTTTTTCGAAAAAAATTGAAAAAACCACCAAAATTTGTATATTTTTTGCT TTTTTTCTGAAAAAATCTCAAAATTTCAAGCTATTTTTGAACATA Found at