TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_V Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 20922231 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:1249757 original size:15 final size:15 Alignment explanation
Indices: 1249737--1249769 Score: 52 Period size: 15 Copynumber: 2.2 Consensus size: 15 1249727 ACCTACTGGA 1249737 TACCTACTAGATACC 1 TACCTACTAGATACC ** 1249752 TACCTACTATGTACC 1 TACCTACTAGATACC 1249767 TAC 1 TAC 1249770 TAGAGTATTA Statistics Matches: 16, Mismatches: 2, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 15 16 1.00 ACGTcount: A:0.30, C:0.33, G:0.06, T:0.30 Consensus pattern (15 bp): TACCTACTAGATACC Left flanking sequence: Indices 1249237 -- 1249736 TAAAAAGAAAAGTAGCAGAAGAAGGCCAAAAGAAAAGAAAAATAAAAAAAAACTTTAATGTAAAA TTCCTCGAATTTAGTTGTTAGAGATATAAAATGTATTAGTGATTTTGAGCACTTTATGTAAGCAT TAAAATGGAAGCGTTTGGTTTTTTTTAAAGCAGCATGTATGTATCCTACTAGAGACTTACTAGAT ACCTGCTGGATACCTACTAGATACCTACTGGATACCTACTAGATACCTACCTACTATGTACCTAC TAGAGTATTATCACACCAACTACTTAGTCTAGTGATAAATAAATTGTTGGTTATAATTCAGTGCA AATTTTTATAACTGTTAATGTAAAAATTCCTCGAATTTAGTTGTTAGAGATATAGAATGTATTAG TGGTTTTGAGCACTTTATGGAAGCATTAAAATGGAAGCGTTTGGTTTTTTTAAGGAGCATGTATG TACCCTACTAGATGCCTACTAGGTACCTACTAGATACCTACTGGA Right flanking sequence: Indices 1249770 -- 1250269 TAGAGTATTATCACACCAACTACTCAATCTGGTGATAAATCAATTGTAGGTTATCACAATGGATA CATCAAGCGTTCCTTGCAAGGTGACAAAAGGTCAGATATCTGCAAGAGATAGTAATCCTAGGGAC CATGTGTCCTTTCTCTCGGTAATTGAGATGTGTCGTTATGAGGGAAACGTTGCAGGGGGTTTATG GTTATGTTTATGGGGAAAGAACAGATGGTTGGAGGATATTTAGAGGGGACTTTGGAATTCAATTT CAGAACATTTTCAAGTTGGAATTAGGCAAAAAGTAGAGTGGATACTTGTTAGTAGCAATCAAGAG GAGAGTTAACTAGACATGATAGGCAGGCACGGCTGCCTATCGCCTGCTTTAAAACTGCCCGTGCC TTAAAGTCAGCCTACGCAAAAGCCCTACTTTTAAATTAGCTTGACTTTAAAATTTAGAAGAATAG ATGGAAAAAAACATAGTTTGGGGATTTTTTGAAAAATTTCAAAAA Found at i:1249771 original size:11 final size:11 Alignment explanation
Indices: 1249695--1249754 Score: 99 Period size: 11 Copynumber: 5.5 Consensus size: 11 1249685 ATGTATGTAC * 1249695 CCTACTAGATG 1 CCTACTAGATA * 1249706 CCTACTAGGTA 1 CCTACTAGATA 1249717 CCTACTAGATA 1 CCTACTAGATA * 1249728 CCTACTGGATA 1 CCTACTAGATA 1249739 CCTACTAGATA 1 CCTACTAGATA 1249750 CCTAC 1 CCTAC 1249755 CTACTATGTA Statistics Matches: 44, Mismatches: 5, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 11 44 1.00 ACGTcount: A:0.30, C:0.30, G:0.13, T:0.27 Consensus pattern (11 bp): CCTACTAGATA Left flanking sequence: Indices 1249195 -- 1249694 GCGAAATGATTAGTTCATATAACATATAACAAAGTGAGAAAATAAAAAGAAAAGTAGCAGAAGAA GGCCAAAAGAAAAGAAAAATAAAAAAAAACTTTAATGTAAAATTCCTCGAATTTAGTTGTTAGAG ATATAAAATGTATTAGTGATTTTGAGCACTTTATGTAAGCATTAAAATGGAAGCGTTTGGTTTTT TTTAAAGCAGCATGTATGTATCCTACTAGAGACTTACTAGATACCTGCTGGATACCTACTAGATA CCTACTGGATACCTACTAGATACCTACCTACTATGTACCTACTAGAGTATTATCACACCAACTAC TTAGTCTAGTGATAAATAAATTGTTGGTTATAATTCAGTGCAAATTTTTATAACTGTTAATGTAA AAATTCCTCGAATTTAGTTGTTAGAGATATAGAATGTATTAGTGGTTTTGAGCACTTTATGGAAG CATTAAAATGGAAGCGTTTGGTTTTTTTAAGGAGCATGTATGTAC Right flanking sequence: Indices 1249755 -- 1250254 CTACTATGTACCTACTAGAGTATTATCACACCAACTACTCAATCTGGTGATAAATCAATTGTAGG TTATCACAATGGATACATCAAGCGTTCCTTGCAAGGTGACAAAAGGTCAGATATCTGCAAGAGAT AGTAATCCTAGGGACCATGTGTCCTTTCTCTCGGTAATTGAGATGTGTCGTTATGAGGGAAACGT TGCAGGGGGTTTATGGTTATGTTTATGGGGAAAGAACAGATGGTTGGAGGATATTTAGAGGGGAC TTTGGAATTCAATTTCAGAACATTTTCAAGTTGGAATTAGGCAAAAAGTAGAGTGGATACTTGTT AGTAGCAATCAAGAGGAGAGTTAACTAGACATGATAGGCAGGCACGGCTGCCTATCGCCTGCTTT AAAACTGCCCGTGCCTTAAAGTCAGCCTACGCAAAAGCCCTACTTTTAAATTAGCTTGACTTTAA AATTTAGAAGAATAGATGGAAAAAAACATAGTTTGGGGATTTTTT Found at i:1251312 original size:33 final size:33 Alignment explanation
Indices: 1251237--1251330 Score: 153 Period size: 33 Copynumber: 2.9 Consensus size: 33 1251227 AAAATTGACA * * * 1251237 TTGGCGGGAATTCAAATTTCTTCAG-AAAAGTT 1 TTGGCGGGAATTCAAAGTTCTTCAGAAAAAATG * 1251269 TTGGCAGGAATTCAAAGTTCTTCAGAAAAAATG 1 TTGGCGGGAATTCAAAGTTCTTCAGAAAAAATG 1251302 TTGGCGGGAATTCAAAGTTCTTCAGAAAA 1 TTGGCGGGAATTCAAAGTTCTTCAGAAAA 1251331 TTTGGTTGTC Statistics Matches: 56, Mismatches: 5, Indels: 1 0.90 0.08 0.02 Matches are distributed among these distances: 32 23 0.41 33 33 0.59 ACGTcount: A:0.35, C:0.13, G:0.22, T:0.30 Consensus pattern (33 bp): TTGGCGGGAATTCAAAGTTCTTCAGAAAAAATG Left flanking sequence: Indices 1250737 -- 1251236 GATGGGGGCAACCTGACACCACGTGATAATGCCTGCCTGCCTAGAAACGTGTCTACGTAACCAGA AAAGCATCTGCAATTAATTTTCATTTTGCAAAAAAAAAAACTGAAAAAAAAACAAAGTTTACGAG AGCTCCAGAAAATCGAATCAAATCGAAATAACAGGATAACATTTCGAAAATAAAGTTTTTTTTAA TCGTCATTTCCAAACGAAACCAATATATTTTTTTGTGTGGCGCCGCCATCTATCTATCTCCGAGC AAGAAGCGCTCACTTTTTGTGCTGTTTTTTTTTGTTGCTCCGCACTAAGAGCTCATGCGCTCTTC ATTTCGTTCAAGAAGAAATGAACGAATGAGCCTATAGTATACAAAACGAATGGGTCATTAAAATG GAACTGAAATTGTTTGCAAGAGGAACGCGATGAGAAAGAGGTTGTGTAGGATTCAAGGGAGCGTC TAAAAGGTAGTCAAGAAGTTTTGAACTGGAATTTAAAAATTGACA Right flanking sequence: Indices 1251331 -- 1251830 TTTGGTTGTCCGCGCCGGGGGGCGCTGAATACTTTTTTAATACTTTTAAAATGAATATGAATACT TTTTAAGTAATGTTAAGTCAGAACAAATGAGAGAATTCCATCAAAGTTTAAAGCCAATATTAAAA AAAAAAACAGCTATACACTAGAACACTATTGAAGCTTAATGATGCTGAAACATGCGACGAGGAAC GGGAAAAGTGGTGGTTTTTGAAAAGAAAAAACGAGAACAAGTGAGCTCTCCCGAAGAGCATGAGA GCTATAGTTTTACGAGACATTTTGACGAGATCATTGGTAGGGGAAGAAGAAAGGCACAAAAAACA TATATTTATGTCAAGTGAAATGGAAAAAATTTAGGGAATTTTTGAGAATTTCGAATTTTCTGATT TATTTGCTAGTTTCCTTAATTTTAGAGGTACATGTGCCTTGGCAGAAGACCTACCTATTTGCCTA CGTACCAGTTTTTCGCGGGTTACTGTAATACTACTGTAGACGGTT Found at i:1251620 original size:13 final size:14 Alignment explanation
Indices: 1251598--1251625 Score: 42 Period size: 13 Copynumber: 2.1 Consensus size: 14 1251588 AGAGCTATAG * 1251598 TTTTACGAGA-CAT 1 TTTGACGAGATCAT 1251611 TTTGACGAGATCAT 1 TTTGACGAGATCAT 1251625 T 1 T 1251626 GGTAGGGGAA Statistics Matches: 13, Mismatches: 1, Indels: 1 0.87 0.07 0.07 Matches are distributed among these distances: 13 9 0.69 14 4 0.31 ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39 Consensus pattern (14 bp): TTTGACGAGATCAT Left flanking sequence: Indices 1251098 -- 1251597 GTATACAAAACGAATGGGTCATTAAAATGGAACTGAAATTGTTTGCAAGAGGAACGCGATGAGAA AGAGGTTGTGTAGGATTCAAGGGAGCGTCTAAAAGGTAGTCAAGAAGTTTTGAACTGGAATTTAA AAATTGACATTGGCGGGAATTCAAATTTCTTCAGAAAAGTTTTGGCAGGAATTCAAAGTTCTTCA GAAAAAATGTTGGCGGGAATTCAAAGTTCTTCAGAAAATTTGGTTGTCCGCGCCGGGGGGCGCTG AATACTTTTTTAATACTTTTAAAATGAATATGAATACTTTTTAAGTAATGTTAAGTCAGAACAAA TGAGAGAATTCCATCAAAGTTTAAAGCCAATATTAAAAAAAAAAACAGCTATACACTAGAACACT ATTGAAGCTTAATGATGCTGAAACATGCGACGAGGAACGGGAAAAGTGGTGGTTTTTGAAAAGAA AAAACGAGAACAAGTGAGCTCTCCCGAAGAGCATGAGAGCTATAG Right flanking sequence: Indices 1251626 -- 1252125 GGTAGGGGAAGAAGAAAGGCACAAAAAACATATATTTATGTCAAGTGAAATGGAAAAAATTTAGG GAATTTTTGAGAATTTCGAATTTTCTGATTTATTTGCTAGTTTCCTTAATTTTAGAGGTACATGT GCCTTGGCAGAAGACCTACCTATTTGCCTACGTACCAGTTTTTCGCGGGTTACTGTAATACTACT GTAGACGGTTGGTTTGGAAATATTATTGAATACCAAAGTGGTTTGGCAATTCTAACAAGACACCT CTTATCAATGAGCACTCAATCAATTATAATATATTTATATTATCACTAAAATCCTTCTGTTTGTT CTCATCAGAACAGATGATAAATGTGCAAAACAGAGGGAAACATTAGTGGGTTGGCATGCTTACTG TCTTATCTACAATTAGGTTTGTAACAAACCCTTTGGTATTTTGACAAAAAATAAATTATTTATTG AATATCTGGGTGATATAGAAAACTGAAAACTCCGGCTTTGGCCTA Found at i:1252395 original size:13 final size:12 Alignment explanation
Indices: 1252377--1252401 Score: 41 Period size: 12 Copynumber: 2.0 Consensus size: 12 1252367 AAATTCGAAA 1252377 AAAAAGACTAGCC 1 AAAAAG-CTAGCC 1252390 AAAAAGCTAGCC 1 AAAAAGCTAGCC 1252402 TTTTACTTTG Statistics Matches: 12, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 12 6 0.50 13 6 0.50 ACGTcount: A:0.52, C:0.24, G:0.16, T:0.08 Consensus pattern (12 bp): AAAAAGCTAGCC Left flanking sequence: Indices 1251877 -- 1252376 AAGACACCTCTTATCAATGAGCACTCAATCAATTATAATATATTTATATTATCACTAAAATCCTT CTGTTTGTTCTCATCAGAACAGATGATAAATGTGCAAAACAGAGGGAAACATTAGTGGGTTGGCA TGCTTACTGTCTTATCTACAATTAGGTTTGTAACAAACCCTTTGGTATTTTGACAAAAAATAAAT TATTTATTGAATATCTGGGTGATATAGAAAACTGAAAACTCCGGCTTTGGCCTAGACTTAGGCTC AGGTATAGGCTTAAGTTTAGGGTTTGGCTTAGGATTAGGTTTAGGCTGAGCCTCAGGTTTAGGCT TAGGCTTAGGCTTCGGCTTCGGCTTAGGGTTAGTCTTAGAGTTAGGTAAAGGCTTTGGCTGGACG TTGGGGGGGGGGGGGGAAGTGATAAAAAAGAAGTTCCAGAGAACTCGAGAATTTGGAAAAAAATA AGAAAAATACACAAAAATCGTGAAGAAAATAGCCAAAATTCGAAA Right flanking sequence: Indices 1252402 -- 1252901 TTTTACTTTGAAAAAACTGAAATAATGTTGCACACTTAAAACATCTACAATTTTTAGTTTACCAC TAGTTGCCTCCAAGAATTACAAAAGCCTGCTGAAAAATCAAACAGTTTCGGAATTTGAAATTCCA CGTAGCAAATGCCAATTTCACACCAATCATGTTAATTTACACTAATCTAGTATGAAGGTTAGTAT GTGTGAAAAATAAAGTCGACAATCAACAGAAGGTCACTTCACTACTGCTGCTGCCTCCCCTCTCC TCCTCCTCTAATTAACCATCCCATTTTCATTTTCAAGCACTCCCTAACGCCTACCAATCCAACCA AAGAATTGACATATGTCTCTCTTCAGAACACCAGCTCTCCTTCTTTTAGGTGAAGCTCTCCCCGG TGCTCTCTTGCTCAATGAGCATAATGGGATTTATTTGGTGGGGGAGAAGAGCTTGTAAGTCGGGG CGGAACACACAAGAGATGAGCCTGAATCAAATTATGATAATTATT Found at i:1253559 original size:11 final size:11 Alignment explanation
Indices: 1253537--1253559 Score: 32 Period size: 11 Copynumber: 2.1 Consensus size: 11 1253527 AAATTTGCAC * 1253537 ATTGTGCAAAA 1 ATTGAGCAAAA * 1253548 ATTGAGCGAAA 1 ATTGAGCAAAA 1253559 A 1 A 1253560 CCAGCCAACT Statistics Matches: 10, Mismatches: 2, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 11 10 1.00 ACGTcount: A:0.48, C:0.09, G:0.22, T:0.22 Consensus pattern (11 bp): ATTGAGCAAAA Left flanking sequence: Indices 1253037 -- 1253536 TTGTACATTTTTTTCGGATAATTTCAGAATTTCAACCTTAATCGGCAAACTTGTACGCATCCTAT GAATTTTCCCACATCTTTTTTGACGAGTAAGCAAATTCTGTAAAATATCTGGTGAAAACCGGCAA AAAAAAATTCAGAAAGACACAGTTTTGAGTGTTTCCGTCGCATAAAAATCGATTTAAAAAATTCC GGCAAATTGATATTTCGGCAATGGGTAAATCGGCAATTTGCCGAAAATCGGAATTTGCGGCAAGT TGGCAAACCGGTAATTTGCCGATTTGCCGAATTTGTCGACAAAAAAATTTGCCGAACGGCAAATT TTGCCCACCCCTGATTTGGAAAATTTTTAGGGAAGGGGTAAATTTTAAAATGGAAATTAAGAATT TTGAGTGAGTTACAGGTGAAATAACTTCAAGAATATTTAATACAATACAATATTTTCAAATATGT GGACTTACCGAAATCGCCGAGCTCTCCAAATTTTGAAATTTGCAC Right flanking sequence: Indices 1253560 -- 1254059 CCAGCCAACTCAGTTTTCTACTAATTTTTGCACTTTTTGAGCTCCAAAAAAAATTCCAATTTACC TAGTATTACCACCACGGCAAATTTGCCAAACTTGCCGGTCTTGGCAAATTTCAAAAACATCCCTG CTTTCATGGCTAATCTGGATTGTTTCTTGATGCGTATTGAAATTAGTATATCTTTCAAAGTCATG CGAAAGATTTATGCAATTGATGCATTTAAGCTTTTGTTGTTTTTTGGCACAAAAACACCCAATTT TTATAAATATATGGGTATACACAAAATACATATTATATTATTTTAAAATTTAAAAAATAATTTTG GTACTTAATTTATGGGTCTGTTTTTCGAAAAAAAAACTATTCTTGAAGCTGTATTTCCTACAAAA TTATTTTGCTGCAAATGAGCATTTGGAGCAAGAAAAAATCGATCTGAAAATGTTAGAAAACAATT CATTTATTTTTTCGAAAAATTTCCTAATGTCATTTTTAGGAACTA Found at i:1254234 original size:15 final size:15 Alignment explanation
Indices: 1254211--1254312 Score: 176 Period size: 15 Copynumber: 6.8 Consensus size: 15 1254201 TGGGCGTGGC 1254211 ACCCTTCGTGGTGAG 1 ACCCTTCGTGGTGAG * 1254226 ACCCATCGTGGTGAG 1 ACCCTTCGTGGTGAG 1254241 ACCCTTCGTGGTGAG 1 ACCCTTCGTGGTGAG 1254256 ACCCTTCGTGGTGAG 1 ACCCTTCGTGGTGAG ** 1254271 ACCAATCGTGGTGAG 1 ACCCTTCGTGGTGAG 1254286 ACCCTTCGTGGTGAG 1 ACCCTTCGTGGTGAG * 1254301 ACCCATCGTGGT 1 ACCCTTCGTGGT 1254313 CAAATTTTCA Statistics Matches: 80, Mismatches: 7, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 15 80 1.00 ACGTcount: A:0.17, C:0.26, G:0.32, T:0.25 Consensus pattern (15 bp): ACCCTTCGTGGTGAG Left flanking sequence: Indices 1253711 -- 1254210 GTTTCTTGATGCGTATTGAAATTAGTATATCTTTCAAAGTCATGCGAAAGATTTATGCAATTGAT GCATTTAAGCTTTTGTTGTTTTTTGGCACAAAAACACCCAATTTTTATAAATATATGGGTATACA CAAAATACATATTATATTATTTTAAAATTTAAAAAATAATTTTGGTACTTAATTTATGGGTCTGT TTTTCGAAAAAAAAACTATTCTTGAAGCTGTATTTCCTACAAAATTATTTTGCTGCAAATGAGCA TTTGGAGCAAGAAAAAATCGATCTGAAAATGTTAGAAAACAATTCATTTATTTTTTCGAAAAATT TCCTAATGTCATTTTTAGGAACTACTGTAACTTACCAAGAAACATTTTAGAGCAATACAATCATC ATTAACTATATATAAAAAAATACAGTTCGTCTGTCCGGAGATTGTAGTCTATGTAGTCTTTGTAG TCTGTGACGTCACGCCCAAATTTCAGTGAGAATAGTGGGCGTGGC Right flanking sequence: Indices 1254313 -- 1254812 CAAATTTTCAGTGAACAATTTTTGGCGGGAAATTCAAATTTTCAGTAAAAAAATTTTGGCGGGAA ATTCAAATTTTCAGTGAAAAAAATTTTGGCGGGAAATTCAAATTTTAAGTGAAAAAAATTTTGGC GGGAAATTCAAATTTTCAGTAAAAAAATTTTGGCGGGAAATTCAAATTTTCAGTGAAAAAAATTT TGGCGGGAAATTCAAATTTTCAGTGTAAAAAATTTTGGCGGGAAATTCAAATTTTCAGTGAAAAA AAATTTTGGCGGGAAATTCAAATTTGCAGTGTAAAAAATTTTGGCGGGAAATTCAAATTTTCTGT GAAAAAAATTTTGGCGGGAAATTCAAATTTTCAGTGAAAAACAATTTTGGCGGAAAATTCCAATT TCTGAGAAAAATCGAGAAATGTCTGCAATGTTCCAGAAGTTTCTAGAAAATTCGAGAAAATTCCG GAATGGTCCAGAATTTTCTAGAAAATTCTAGAAAGTTCTGGAATA Found at i:1254491 original size:104 final size:105 Alignment explanation
Indices: 1254312--1254703 Score: 682 Period size: 104 Copynumber: 3.7 Consensus size: 105 1254302 CCCATCGTGG * * 1254312 TCAAATTTTCAGTG-AACAATTTTTGGCGGGAAATTCAAATTTTCAGT-AAAAAAATTTTGGCGG 1 TCAAATTTTCAGTGAAAAAAATTTTGGCGGGAAATTCAAATTTTCAGTGAAAAAAATTTTGGCGG 1254375 GAAATTCAAATTTTCAGTGAAAAAAATTTTGGCGGGAAAT 66 GAAATTCAAATTTTCAGTGAAAAAAATTTTGGCGGGAAAT * 1254415 TCAAATTTTAAGTGAAAAAAATTTTGGCGGGAAATTCAAATTTTCAGT-AAAAAAATTTTGGCGG 1 TCAAATTTTCAGTGAAAAAAATTTTGGCGGGAAATTCAAATTTTCAGTGAAAAAAATTTTGGCGG 1254479 GAAATTCAAATTTTCAGTGAAAAAAATTTTGGCGGGAAAT 66 GAAATTCAAATTTTCAGTGAAAAAAATTTTGGCGGGAAAT * 1254519 TCAAATTTTCAGTGTAAAAAATTTTGGCGGGAAATTCAAATTTTCAGTGAAAAAAAATTTTGGCG 1 TCAAATTTTCAGTGAAAAAAATTTTGGCGGGAAATTCAAATTTTCAGTG-AAAAAAATTTTGGCG * * 1254584 GGAAATTCAAATTTGCAGTGTAAAAAATTTTGGCGGGAAAT 65 GGAAATTCAAATTTTCAGTGAAAAAAATTTTGGCGGGAAAT * 1254625 TCAAATTTTCTGTGAAAAAAATTTTGGCGGGAAATTCAAATTTTCAGTGAAAAACAATTTTGGCG 1 TCAAATTTTCAGTGAAAAAAATTTTGGCGGGAAATTCAAATTTTCAGTGAAAAA-AATTTTGGCG * * 1254690 GAAAATTCCAATTT 65 GGAAATTCAAATTT 1254704 CTGAGAAAAA Statistics Matches: 274, Mismatches: 11, Indels: 5 0.94 0.04 0.02 Matches are distributed among these distances: 103 13 0.05 104 133 0.49 105 5 0.02 106 123 0.45 ACGTcount: A:0.39, C:0.09, G:0.19, T:0.33 Consensus pattern (105 bp): TCAAATTTTCAGTGAAAAAAATTTTGGCGGGAAATTCAAATTTTCAGTGAAAAAAATTTTGGCGG GAAATTCAAATTTTCAGTGAAAAAAATTTTGGCGGGAAAT Left flanking sequence: Indices 1253812 -- 1254311 CCCAATTTTTATAAATATATGGGTATACACAAAATACATATTATATTATTTTAAAATTTAAAAAA TAATTTTGGTACTTAATTTATGGGTCTGTTTTTCGAAAAAAAAACTATTCTTGAAGCTGTATTTC CTACAAAATTATTTTGCTGCAAATGAGCATTTGGAGCAAGAAAAAATCGATCTGAAAATGTTAGA AAACAATTCATTTATTTTTTCGAAAAATTTCCTAATGTCATTTTTAGGAACTACTGTAACTTACC AAGAAACATTTTAGAGCAATACAATCATCATTAACTATATATAAAAAAATACAGTTCGTCTGTCC GGAGATTGTAGTCTATGTAGTCTTTGTAGTCTGTGACGTCACGCCCAAATTTCAGTGAGAATAGT GGGCGTGGCACCCTTCGTGGTGAGACCCATCGTGGTGAGACCCTTCGTGGTGAGACCCTTCGTGG TGAGACCAATCGTGGTGAGACCCTTCGTGGTGAGACCCATCGTGG Right flanking sequence: Indices 1254704 -- 1255203 CTGAGAAAAATCGAGAAATGTCTGCAATGTTCCAGAAGTTTCTAGAAAATTCGAGAAAATTCCGG AATGGTCCAGAATTTTCTAGAAAATTCTAGAAAGTTCTGGAATAATTTTTTCCACATCTTACAGT GGTTAGAAATCAACAATCATTAACTATATATAAAAAAATACAGTTCGTCTGTCCGGAGTTTGTAG TCTATGTAGTCTTTGTAGTCTGTGACGTCACGCCCAAATTTCAGTGAGAATAGTGGGCGTGGCAC CCTTCGTGGTGAGACCCATCGTGGTGAGACCCTTCGTGGTGAGACCCTTCGTGGTGAGACCAATC GTGGTGAGACCTTTCGTGGTGAGACCCTTCGTGGTGAGACCAATCGTGGTGAGACCTTTCGTGGT GAGACCCTTCGTGGTGAGACCAATCGTGGTGAGACCTTTCGTGGTGAGACCCTTCGTGGTGAGAC CCATCGTGGTCAAATTTTCAGTGAACAATTTTTGGCGGGAAATTC Found at i:1254713 original size:35 final size:35 Alignment explanation
Indices: 1254312--1254703 Score: 682 Period size: 35 Copynumber: 11.2 Consensus size: 35 1254302 CCCATCGTGG * * 1254312 TCAAATTTTCAGTG-AACAATTTTTGGCGGGAAAT 1 TCAAATTTTCAGTGAAAAAAATTTTGGCGGGAAAT 1254346 TCAAATTTTCAGT-AAAAAAATTTTGGCGGGAAAT 1 TCAAATTTTCAGTGAAAAAAATTTTGGCGGGAAAT 1254380 TCAAATTTTCAGTGAAAAAAATTTTGGCGGGAAAT 1 TCAAATTTTCAGTGAAAAAAATTTTGGCGGGAAAT * 1254415 TCAAATTTTAAGTGAAAAAAATTTTGGCGGGAAAT 1 TCAAATTTTCAGTGAAAAAAATTTTGGCGGGAAAT 1254450 TCAAATTTTCAGT-AAAAAAATTTTGGCGGGAAAT 1 TCAAATTTTCAGTGAAAAAAATTTTGGCGGGAAAT 1254484 TCAAATTTTCAGTGAAAAAAATTTTGGCGGGAAAT 1 TCAAATTTTCAGTGAAAAAAATTTTGGCGGGAAAT * 1254519 TCAAATTTTCAGTGTAAAAAATTTTGGCGGGAAAT 1 TCAAATTTTCAGTGAAAAAAATTTTGGCGGGAAAT 1254554 TCAAATTTTCAGTGAAAAAAAATTTTGGCGGGAAAT 1 TCAAATTTTCAGTG-AAAAAAATTTTGGCGGGAAAT * * 1254590 TCAAATTTGCAGTGTAAAAAATTTTGGCGGGAAAT 1 TCAAATTTTCAGTGAAAAAAATTTTGGCGGGAAAT * 1254625 TCAAATTTTCTGTGAAAAAAATTTTGGCGGGAAAT 1 TCAAATTTTCAGTGAAAAAAATTTTGGCGGGAAAT * 1254660 TCAAATTTTCAGTGAAAAACAATTTTGGCGGAAAAT 1 TCAAATTTTCAGTGAAAAA-AATTTTGGCGGGAAAT * 1254696 TCCAATTT 1 TCAAATTT 1254704 CTGAGAAAAA Statistics Matches: 339, Mismatches: 14, Indels: 8 0.94 0.04 0.02 Matches are distributed among these distances: 34 78 0.23 35 206 0.61 36 55 0.16 ACGTcount: A:0.39, C:0.09, G:0.19, T:0.33 Consensus pattern (35 bp): TCAAATTTTCAGTGAAAAAAATTTTGGCGGGAAAT Left flanking sequence: Indices 1253812 -- 1254311 CCCAATTTTTATAAATATATGGGTATACACAAAATACATATTATATTATTTTAAAATTTAAAAAA TAATTTTGGTACTTAATTTATGGGTCTGTTTTTCGAAAAAAAAACTATTCTTGAAGCTGTATTTC CTACAAAATTATTTTGCTGCAAATGAGCATTTGGAGCAAGAAAAAATCGATCTGAAAATGTTAGA AAACAATTCATTTATTTTTTCGAAAAATTTCCTAATGTCATTTTTAGGAACTACTGTAACTTACC AAGAAACATTTTAGAGCAATACAATCATCATTAACTATATATAAAAAAATACAGTTCGTCTGTCC GGAGATTGTAGTCTATGTAGTCTTTGTAGTCTGTGACGTCACGCCCAAATTTCAGTGAGAATAGT GGGCGTGGCACCCTTCGTGGTGAGACCCATCGTGGTGAGACCCTTCGTGGTGAGACCCTTCGTGG TGAGACCAATCGTGGTGAGACCCTTCGTGGTGAGACCCATCGTGG Right flanking sequence: Indices 1254704 -- 1255203 CTGAGAAAAATCGAGAAATGTCTGCAATGTTCCAGAAGTTTCTAGAAAATTCGAGAAAATTCCGG AATGGTCCAGAATTTTCTAGAAAATTCTAGAAAGTTCTGGAATAATTTTTTCCACATCTTACAGT GGTTAGAAATCAACAATCATTAACTATATATAAAAAAATACAGTTCGTCTGTCCGGAGTTTGTAG TCTATGTAGTCTTTGTAGTCTGTGACGTCACGCCCAAATTTCAGTGAGAATAGTGGGCGTGGCAC CCTTCGTGGTGAGACCCATCGTGGTGAGACCCTTCGTGGTGAGACCCTTCGTGGTGAGACCAATC GTGGTGAGACCTTTCGTGGTGAGACCCTTCGTGGTGAGACCAATCGTGGTGAGACCTTTCGTGGT GAGACCCTTCGTGGTGAGACCAATCGTGGTGAGACCTTTCGTGGTGAGACCCTTCGTGGTGAGAC CCATCGTGGTCAAATTTTCAGTGAACAATTTTTGGCGGGAAATTC Found at i:1254811 original size:40 final size:40 Alignment explanation
Indices: 1254701--1254811 Score: 150 Period size: 40 Copynumber: 2.8 Consensus size: 40 1254691 AAAATTCCAA * ** * * 1254701 TTTCTGAGAAAAATCGAGAAATGTCTGCAATGTTCCAGAAG 1 TTTCT-AGAAAATTCGAGAAAATTCTGGAATGGTCCAGAAG * * 1254742 TTTCTAGAAAATTCGAGAAAATTCCGGAATGGTCCAGAAT 1 TTTCTAGAAAATTCGAGAAAATTCTGGAATGGTCCAGAAG * * 1254782 TTTCTAGAAAATTCTAGAAAGTTCTGGAAT 1 TTTCTAGAAAATTCGAGAAAATTCTGGAAT 1254812 AATTTTTTCC Statistics Matches: 60, Mismatches: 10, Indels: 1 0.85 0.14 0.01 Matches are distributed among these distances: 40 55 0.92 41 5 0.08 ACGTcount: A:0.37, C:0.14, G:0.20, T:0.30 Consensus pattern (40 bp): TTTCTAGAAAATTCGAGAAAATTCTGGAATGGTCCAGAAG Left flanking sequence: Indices 1254201 -- 1254700 TGGGCGTGGCACCCTTCGTGGTGAGACCCATCGTGGTGAGACCCTTCGTGGTGAGACCCTTCGTG GTGAGACCAATCGTGGTGAGACCCTTCGTGGTGAGACCCATCGTGGTCAAATTTTCAGTGAACAA TTTTTGGCGGGAAATTCAAATTTTCAGTAAAAAAATTTTGGCGGGAAATTCAAATTTTCAGTGAA AAAAATTTTGGCGGGAAATTCAAATTTTAAGTGAAAAAAATTTTGGCGGGAAATTCAAATTTTCA GTAAAAAAATTTTGGCGGGAAATTCAAATTTTCAGTGAAAAAAATTTTGGCGGGAAATTCAAATT TTCAGTGTAAAAAATTTTGGCGGGAAATTCAAATTTTCAGTGAAAAAAAATTTTGGCGGGAAATT CAAATTTGCAGTGTAAAAAATTTTGGCGGGAAATTCAAATTTTCTGTGAAAAAAATTTTGGCGGG AAATTCAAATTTTCAGTGAAAAACAATTTTGGCGGAAAATTCCAA Right flanking sequence: Indices 1254812 -- 1255311 AATTTTTTCCACATCTTACAGTGGTTAGAAATCAACAATCATTAACTATATATAAAAAAATACAG TTCGTCTGTCCGGAGTTTGTAGTCTATGTAGTCTTTGTAGTCTGTGACGTCACGCCCAAATTTCA GTGAGAATAGTGGGCGTGGCACCCTTCGTGGTGAGACCCATCGTGGTGAGACCCTTCGTGGTGAG ACCCTTCGTGGTGAGACCAATCGTGGTGAGACCTTTCGTGGTGAGACCCTTCGTGGTGAGACCAA TCGTGGTGAGACCTTTCGTGGTGAGACCCTTCGTGGTGAGACCAATCGTGGTGAGACCTTTCGTG GTGAGACCCTTCGTGGTGAGACCCATCGTGGTCAAATTTTCAGTGAACAATTTTTGGCGGGAAAT TCAAATTTTCAGTGAAAAAAATTTTGGCGGGAAATTCAAATTTTCAGTGAAAAACAATTTTGGCG GAAAATTCCAATTTCTGAGAAAAATCGAGAAATGTCTGCAATGTT Found at i:1254985 original size:15 final size:15 Alignment explanation
Indices: 1254962--1255168 Score: 337 Period size: 15 Copynumber: 13.8 Consensus size: 15 1254952 TGGGCGTGGC 1254962 ACCCTTCGTGGTGAG 1 ACCCTTCGTGGTGAG * 1254977 ACCCATCGTGGTGAG 1 ACCCTTCGTGGTGAG 1254992 ACCCTTCGTGGTGAG 1 ACCCTTCGTGGTGAG 1255007 ACCCTTCGTGGTGAG 1 ACCCTTCGTGGTGAG ** 1255022 ACCAATCGTGGTGAG 1 ACCCTTCGTGGTGAG * 1255037 ACCTTTCGTGGTGAG 1 ACCCTTCGTGGTGAG 1255052 ACCCTTCGTGGTGAG 1 ACCCTTCGTGGTGAG ** 1255067 ACCAATCGTGGTGAG 1 ACCCTTCGTGGTGAG * 1255082 ACCTTTCGTGGTGAG 1 ACCCTTCGTGGTGAG 1255097 ACCCTTCGTGGTGAG 1 ACCCTTCGTGGTGAG ** 1255112 ACCAATCGTGGTGAG 1 ACCCTTCGTGGTGAG * 1255127 ACCTTTCGTGGTGAG 1 ACCCTTCGTGGTGAG 1255142 ACCCTTCGTGGTGAG 1 ACCCTTCGTGGTGAG * 1255157 ACCCATCGTGGT 1 ACCCTTCGTGGT 1255169 CAAATTTTCA Statistics Matches: 174, Mismatches: 18, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 15 174 1.00 ACGTcount: A:0.17, C:0.24, G:0.33, T:0.26 Consensus pattern (15 bp): ACCCTTCGTGGTGAG Left flanking sequence: Indices 1254462 -- 1254961 TAAAAAAATTTTGGCGGGAAATTCAAATTTTCAGTGAAAAAAATTTTGGCGGGAAATTCAAATTT TCAGTGTAAAAAATTTTGGCGGGAAATTCAAATTTTCAGTGAAAAAAAATTTTGGCGGGAAATTC AAATTTGCAGTGTAAAAAATTTTGGCGGGAAATTCAAATTTTCTGTGAAAAAAATTTTGGCGGGA AATTCAAATTTTCAGTGAAAAACAATTTTGGCGGAAAATTCCAATTTCTGAGAAAAATCGAGAAA TGTCTGCAATGTTCCAGAAGTTTCTAGAAAATTCGAGAAAATTCCGGAATGGTCCAGAATTTTCT AGAAAATTCTAGAAAGTTCTGGAATAATTTTTTCCACATCTTACAGTGGTTAGAAATCAACAATC ATTAACTATATATAAAAAAATACAGTTCGTCTGTCCGGAGTTTGTAGTCTATGTAGTCTTTGTAG TCTGTGACGTCACGCCCAAATTTCAGTGAGAATAGTGGGCGTGGC Right flanking sequence: Indices 1255169 -- 1255668 CAAATTTTCAGTGAACAATTTTTGGCGGGAAATTCAAATTTTCAGTGAAAAAAATTTTGGCGGGA AATTCAAATTTTCAGTGAAAAACAATTTTGGCGGAAAATTCCAATTTCTGAGAAAAATCGAGAAA TGTCTGCAATGTTCCAGAAGTTTCTAGAAAATTCGAGAAAATTCCGGAATGGTCCAGAATTTTCT AGAAAATTCGGGAAAATTCTGGAATAATTTTTTCCACATCTTACAGTGGTTAGAAATCAACAATC ATTAACATATATAAAAAAATACAGTTCGTCTGTCCGGAGTTTGTAGTCTATGTAGTCTTTGTTTC TGCGGAAAGATATTGTGGCGGGAAATTTAAATAGGGCAAGTAAAAAATTTTGGCGGGAAATTCAA AATTTTTGTGGAAAAAACTTGGGGGGGGAAGTCAAATTTTGAGTGGTAAACAAAATTGGGGGGAA ATTCCGAATTTTGAGGAAAATTGGGGAAAGTTTGGCAAGGTTCAG Found at i:1255011 original size:45 final size:45 Alignment explanation
Indices: 1254962--1255168 Score: 393 Period size: 45 Copynumber: 4.6 Consensus size: 45 1254952 TGGGCGTGGC * * 1254962 ACCCTTCGTGGTGAGACCCATCGTGGTGAGACCCTTCGTGGTGAG 1 ACCCTTCGTGGTGAGACCAATCGTGGTGAGACCTTTCGTGGTGAG 1255007 ACCCTTCGTGGTGAGACCAATCGTGGTGAGACCTTTCGTGGTGAG 1 ACCCTTCGTGGTGAGACCAATCGTGGTGAGACCTTTCGTGGTGAG 1255052 ACCCTTCGTGGTGAGACCAATCGTGGTGAGACCTTTCGTGGTGAG 1 ACCCTTCGTGGTGAGACCAATCGTGGTGAGACCTTTCGTGGTGAG 1255097 ACCCTTCGTGGTGAGACCAATCGTGGTGAGACCTTTCGTGGTGAG 1 ACCCTTCGTGGTGAGACCAATCGTGGTGAGACCTTTCGTGGTGAG * 1255142 ACCCTTCGTGGTGAGACCCATCGTGGT 1 ACCCTTCGTGGTGAGACCAATCGTGGT 1255169 CAAATTTTCA Statistics Matches: 159, Mismatches: 3, Indels: 0 0.98 0.02 0.00 Matches are distributed among these distances: 45 159 1.00 ACGTcount: A:0.17, C:0.24, G:0.33, T:0.26 Consensus pattern (45 bp): ACCCTTCGTGGTGAGACCAATCGTGGTGAGACCTTTCGTGGTGAG Left flanking sequence: Indices 1254462 -- 1254961 TAAAAAAATTTTGGCGGGAAATTCAAATTTTCAGTGAAAAAAATTTTGGCGGGAAATTCAAATTT TCAGTGTAAAAAATTTTGGCGGGAAATTCAAATTTTCAGTGAAAAAAAATTTTGGCGGGAAATTC AAATTTGCAGTGTAAAAAATTTTGGCGGGAAATTCAAATTTTCTGTGAAAAAAATTTTGGCGGGA AATTCAAATTTTCAGTGAAAAACAATTTTGGCGGAAAATTCCAATTTCTGAGAAAAATCGAGAAA TGTCTGCAATGTTCCAGAAGTTTCTAGAAAATTCGAGAAAATTCCGGAATGGTCCAGAATTTTCT AGAAAATTCTAGAAAGTTCTGGAATAATTTTTTCCACATCTTACAGTGGTTAGAAATCAACAATC ATTAACTATATATAAAAAAATACAGTTCGTCTGTCCGGAGTTTGTAGTCTATGTAGTCTTTGTAG TCTGTGACGTCACGCCCAAATTTCAGTGAGAATAGTGGGCGTGGC Right flanking sequence: Indices 1255169 -- 1255668 CAAATTTTCAGTGAACAATTTTTGGCGGGAAATTCAAATTTTCAGTGAAAAAAATTTTGGCGGGA AATTCAAATTTTCAGTGAAAAACAATTTTGGCGGAAAATTCCAATTTCTGAGAAAAATCGAGAAA TGTCTGCAATGTTCCAGAAGTTTCTAGAAAATTCGAGAAAATTCCGGAATGGTCCAGAATTTTCT AGAAAATTCGGGAAAATTCTGGAATAATTTTTTCCACATCTTACAGTGGTTAGAAATCAACAATC ATTAACATATATAAAAAAATACAGTTCGTCTGTCCGGAGTTTGTAGTCTATGTAGTCTTTGTTTC TGCGGAAAGATATTGTGGCGGGAAATTTAAATAGGGCAAGTAAAAAATTTTGGCGGGAAATTCAA AATTTTTGTGGAAAAAACTTGGGGGGGGAAGTCAAATTTTGAGTGGTAAACAAAATTGGGGGGAA ATTCCGAATTTTGAGGAAAATTGGGGAAAGTTTGGCAAGGTTCAG Found at i:1255261 original size:36 final size:35 Alignment explanation
Indices: 1255168--1255280 Score: 182 Period size: 35 Copynumber: 3.2 Consensus size: 35 1255158 CCCATCGTGG * * 1255168 TCAAATTTTCAGTG-AACAATTTTTGGCGGGAAAT 1 TCAAATTTTCAGTGAAAAAAATTTTGGCGGGAAAT 1255202 TCAAATTTTCAGTGAAAAAAATTTTGGCGGGAAAT 1 TCAAATTTTCAGTGAAAAAAATTTTGGCGGGAAAT * 1255237 TCAAATTTTCAGTGAAAAACAATTTTGGCGGAAAAT 1 TCAAATTTTCAGTGAAAAA-AATTTTGGCGGGAAAT * 1255273 TCCAATTT 1 TCAAATTT 1255281 CTGAGAAAAA Statistics Matches: 73, Mismatches: 4, Indels: 2 0.92 0.05 0.03 Matches are distributed among these distances: 34 14 0.19 35 37 0.51 36 22 0.30 ACGTcount: A:0.37, C:0.12, G:0.18, T:0.34 Consensus pattern (35 bp): TCAAATTTTCAGTGAAAAAAATTTTGGCGGGAAAT Left flanking sequence: Indices 1254668 -- 1255167 TCAGTGAAAAACAATTTTGGCGGAAAATTCCAATTTCTGAGAAAAATCGAGAAATGTCTGCAATG TTCCAGAAGTTTCTAGAAAATTCGAGAAAATTCCGGAATGGTCCAGAATTTTCTAGAAAATTCTA GAAAGTTCTGGAATAATTTTTTCCACATCTTACAGTGGTTAGAAATCAACAATCATTAACTATAT ATAAAAAAATACAGTTCGTCTGTCCGGAGTTTGTAGTCTATGTAGTCTTTGTAGTCTGTGACGTC ACGCCCAAATTTCAGTGAGAATAGTGGGCGTGGCACCCTTCGTGGTGAGACCCATCGTGGTGAGA CCCTTCGTGGTGAGACCCTTCGTGGTGAGACCAATCGTGGTGAGACCTTTCGTGGTGAGACCCTT CGTGGTGAGACCAATCGTGGTGAGACCTTTCGTGGTGAGACCCTTCGTGGTGAGACCAATCGTGG TGAGACCTTTCGTGGTGAGACCCTTCGTGGTGAGACCCATCGTGG Right flanking sequence: Indices 1255281 -- 1255780 CTGAGAAAAATCGAGAAATGTCTGCAATGTTCCAGAAGTTTCTAGAAAATTCGAGAAAATTCCGG AATGGTCCAGAATTTTCTAGAAAATTCGGGAAAATTCTGGAATAATTTTTTCCACATCTTACAGT GGTTAGAAATCAACAATCATTAACATATATAAAAAAATACAGTTCGTCTGTCCGGAGTTTGTAGT CTATGTAGTCTTTGTTTCTGCGGAAAGATATTGTGGCGGGAAATTTAAATAGGGCAAGTAAAAAA TTTTGGCGGGAAATTCAAAATTTTTGTGGAAAAAACTTGGGGGGGGAAGTCAAATTTTGAGTGGT AAACAAAATTGGGGGGAAATTCCGAATTTTGAGGAAAATTGGGGAAAGTTTGGCAAGGTTCAGGA GGTTTTTGGAAAATTGGGGAAAATTCGGGATGGTTCAGGAATTTTTTGGAAAATTTGGGAAGATT TGGGATTAATTTTTTCAAATTTTACCGGGGGTTGGAATTCAACAT Found at i:1255380 original size:40 final size:40 Alignment explanation
Indices: 1255278--1255388 Score: 157 Period size: 40 Copynumber: 2.8 Consensus size: 40 1255268 AAAATTCCAA * ** * * 1255278 TTTCTGAGAAAAATCGAGAAATGTCTGCAATGTTCCAGAAG 1 TTTCT-AGAAAATTCGAGAAAATTCTGGAATGGTCCAGAAG * * 1255319 TTTCTAGAAAATTCGAGAAAATTCCGGAATGGTCCAGAAT 1 TTTCTAGAAAATTCGAGAAAATTCTGGAATGGTCCAGAAG * 1255359 TTTCTAGAAAATTCGGGAAAATTCTGGAAT 1 TTTCTAGAAAATTCGAGAAAATTCTGGAAT 1255389 AATTTTTTCC Statistics Matches: 61, Mismatches: 9, Indels: 1 0.86 0.13 0.01 Matches are distributed among these distances: 40 56 0.92 41 5 0.08 ACGTcount: A:0.37, C:0.14, G:0.21, T:0.29 Consensus pattern (40 bp): TTTCTAGAAAATTCGAGAAAATTCTGGAATGGTCCAGAAG Left flanking sequence: Indices 1254778 -- 1255277 GAATTTTCTAGAAAATTCTAGAAAGTTCTGGAATAATTTTTTCCACATCTTACAGTGGTTAGAAA TCAACAATCATTAACTATATATAAAAAAATACAGTTCGTCTGTCCGGAGTTTGTAGTCTATGTAG TCTTTGTAGTCTGTGACGTCACGCCCAAATTTCAGTGAGAATAGTGGGCGTGGCACCCTTCGTGG TGAGACCCATCGTGGTGAGACCCTTCGTGGTGAGACCCTTCGTGGTGAGACCAATCGTGGTGAGA CCTTTCGTGGTGAGACCCTTCGTGGTGAGACCAATCGTGGTGAGACCTTTCGTGGTGAGACCCTT CGTGGTGAGACCAATCGTGGTGAGACCTTTCGTGGTGAGACCCTTCGTGGTGAGACCCATCGTGG TCAAATTTTCAGTGAACAATTTTTGGCGGGAAATTCAAATTTTCAGTGAAAAAAATTTTGGCGGG AAATTCAAATTTTCAGTGAAAAACAATTTTGGCGGAAAATTCCAA Right flanking sequence: Indices 1255389 -- 1255888 AATTTTTTCCACATCTTACAGTGGTTAGAAATCAACAATCATTAACATATATAAAAAAATACAGT TCGTCTGTCCGGAGTTTGTAGTCTATGTAGTCTTTGTTTCTGCGGAAAGATATTGTGGCGGGAAA TTTAAATAGGGCAAGTAAAAAATTTTGGCGGGAAATTCAAAATTTTTGTGGAAAAAACTTGGGGG GGGAAGTCAAATTTTGAGTGGTAAACAAAATTGGGGGGAAATTCCGAATTTTGAGGAAAATTGGG GAAAGTTTGGCAAGGTTCAGGAGGTTTTTGGAAAATTGGGGAAAATTCGGGATGGTTCAGGAATT TTTTGGAAAATTTGGGAAGATTTGGGATTAATTTTTTCAAATTTTACCGGGGGTTGGAATTCAAC ATTCTTTAACATATATAAAAAAATACAGTTCGTCTGTCCGGAGTTTGTAGTTTATGTAGTCTTTG TAGTCTGTGACGTCACGCCCAAATTTCAGTGAGAATAGTGGGCGT Found at i:1255741 original size:40 final size:40 Alignment explanation
Indices: 1255629--1255741 Score: 156 Period size: 40 Copynumber: 2.8 Consensus size: 40 1255619 GGGAAATTCC ** * * * 1255629 GAATTTTGAGGAAAATTGGGGAAAGTTTGGCAAGGTTCAG 1 GAATTTTTTGGAAAATTGGGGAAAATTTGGGATGGTTCAG ** * 1255669 GAGGTTTTTGGAAAATTGGGGAAAATTCGGGATGGTTCAG 1 GAATTTTTTGGAAAATTGGGGAAAATTTGGGATGGTTCAG * * 1255709 GAATTTTTTGGAAAATTTGGGAAGATTTGGGAT 1 GAATTTTTTGGAAAATTGGGGAAAATTTGGGAT 1255742 TAATTTTTTC Statistics Matches: 60, Mismatches: 13, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 40 60 1.00 ACGTcount: A:0.30, C:0.04, G:0.35, T:0.32 Consensus pattern (40 bp): GAATTTTTTGGAAAATTGGGGAAAATTTGGGATGGTTCAG Left flanking sequence: Indices 1255129 -- 1255628 CTTTCGTGGTGAGACCCTTCGTGGTGAGACCCATCGTGGTCAAATTTTCAGTGAACAATTTTTGG CGGGAAATTCAAATTTTCAGTGAAAAAAATTTTGGCGGGAAATTCAAATTTTCAGTGAAAAACAA TTTTGGCGGAAAATTCCAATTTCTGAGAAAAATCGAGAAATGTCTGCAATGTTCCAGAAGTTTCT AGAAAATTCGAGAAAATTCCGGAATGGTCCAGAATTTTCTAGAAAATTCGGGAAAATTCTGGAAT AATTTTTTCCACATCTTACAGTGGTTAGAAATCAACAATCATTAACATATATAAAAAAATACAGT TCGTCTGTCCGGAGTTTGTAGTCTATGTAGTCTTTGTTTCTGCGGAAAGATATTGTGGCGGGAAA TTTAAATAGGGCAAGTAAAAAATTTTGGCGGGAAATTCAAAATTTTTGTGGAAAAAACTTGGGGG GGGAAGTCAAATTTTGAGTGGTAAACAAAATTGGGGGGAAATTCC Right flanking sequence: Indices 1255742 -- 1256241 TAATTTTTTCAAATTTTACCGGGGGTTGGAATTCAACATTCTTTAACATATATAAAAAAATACAG TTCGTCTGTCCGGAGTTTGTAGTTTATGTAGTCTTTGTAGTCTGTGACGTCACGCCCAAATTTCA GTGAGAATAGTGGGCGTGGCACCCTTCGTGGTGAGACCCATCGTGGTGAGACCCTTCGTGGTGAG ACCCTTCGTGGTGAGACCAATCGTGGTGAGACCTTTCGTGGTGAGACCCTTCGTGGTGAGACCAA TCGTGGTGAGACCTTTCGTGGTGAGACCCTTCGTGGTGAGACCAATCGTGGTGAGACCTTTCGTG GTGAGACCCTTCGTGGTGAGACCCATCGTGGTCAAATTTTCAGTGAACAATTTTTGGCGGGAAAT TCAAATTTTCAGTGAAAAAAATTTTGGCGGGAAATTCAAATTTTCAGTGAAAAACAATTTTGGCG GAAAATTCCAATTTCTGAGAAAAATCGAGAAATGTCTGCAATGTT Found at i:1255915 original size:15 final size:15 Alignment explanation
Indices: 1255892--1256098 Score: 337 Period size: 15 Copynumber: 13.8 Consensus size: 15 1255882 TGGGCGTGGC 1255892 ACCCTTCGTGGTGAG 1 ACCCTTCGTGGTGAG * 1255907 ACCCATCGTGGTGAG 1 ACCCTTCGTGGTGAG 1255922 ACCCTTCGTGGTGAG 1 ACCCTTCGTGGTGAG 1255937 ACCCTTCGTGGTGAG 1 ACCCTTCGTGGTGAG ** 1255952 ACCAATCGTGGTGAG 1 ACCCTTCGTGGTGAG * 1255967 ACCTTTCGTGGTGAG 1 ACCCTTCGTGGTGAG 1255982 ACCCTTCGTGGTGAG 1 ACCCTTCGTGGTGAG ** 1255997 ACCAATCGTGGTGAG 1 ACCCTTCGTGGTGAG * 1256012 ACCTTTCGTGGTGAG 1 ACCCTTCGTGGTGAG 1256027 ACCCTTCGTGGTGAG 1 ACCCTTCGTGGTGAG ** 1256042 ACCAATCGTGGTGAG 1 ACCCTTCGTGGTGAG * 1256057 ACCTTTCGTGGTGAG 1 ACCCTTCGTGGTGAG 1256072 ACCCTTCGTGGTGAG 1 ACCCTTCGTGGTGAG * 1256087 ACCCATCGTGGT 1 ACCCTTCGTGGT 1256099 CAAATTTTCA Statistics Matches: 174, Mismatches: 18, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 15 174 1.00 ACGTcount: A:0.17, C:0.24, G:0.33, T:0.26 Consensus pattern (15 bp): ACCCTTCGTGGTGAG Left flanking sequence: Indices 1255392 -- 1255891 TTTTTCCACATCTTACAGTGGTTAGAAATCAACAATCATTAACATATATAAAAAAATACAGTTCG TCTGTCCGGAGTTTGTAGTCTATGTAGTCTTTGTTTCTGCGGAAAGATATTGTGGCGGGAAATTT AAATAGGGCAAGTAAAAAATTTTGGCGGGAAATTCAAAATTTTTGTGGAAAAAACTTGGGGGGGG AAGTCAAATTTTGAGTGGTAAACAAAATTGGGGGGAAATTCCGAATTTTGAGGAAAATTGGGGAA AGTTTGGCAAGGTTCAGGAGGTTTTTGGAAAATTGGGGAAAATTCGGGATGGTTCAGGAATTTTT TGGAAAATTTGGGAAGATTTGGGATTAATTTTTTCAAATTTTACCGGGGGTTGGAATTCAACATT CTTTAACATATATAAAAAAATACAGTTCGTCTGTCCGGAGTTTGTAGTTTATGTAGTCTTTGTAG TCTGTGACGTCACGCCCAAATTTCAGTGAGAATAGTGGGCGTGGC Right flanking sequence: Indices 1256099 -- 1256598 CAAATTTTCAGTGAACAATTTTTGGCGGGAAATTCAAATTTTCAGTGAAAAAAATTTTGGCGGGA AATTCAAATTTTCAGTGAAAAACAATTTTGGCGGAAAATTCCAATTTCTGAGAAAAATCGAGAAA TGTCTGCAATGTTCCAGAAGTTTCTAGAAAATTCGAGAAAATTCCGGAATGGTCCAGAATTTTCT AGAAAATTCGAGAAAATTCCGGAATGGTCCAGAATTTTCTGGAAAATTCTAGAAAGTTCTGGAAT GGTCCAGAATTTTCTAGAAAATTCGGGAAAACTCTGGAATATTCCAGAACTTTCTAGAAAAATCG AGAAATGTCTGCAATGTTCCAGAAGTTTCTAGAAAATTCGAGAAAATTCCGGAATGGTCCAGAAT TTTCTAGAAAATTCGGGAAAATTCTGGAATAATTTTTTCCACATCTTACAGTGGTTAGAAATCAA CAATCATTAACATATATAAAAAAATACAGTTCGTCTGTCCGGAGT Found at i:1255941 original size:45 final size:45 Alignment explanation
Indices: 1255892--1256098 Score: 393 Period size: 45 Copynumber: 4.6 Consensus size: 45 1255882 TGGGCGTGGC * * 1255892 ACCCTTCGTGGTGAGACCCATCGTGGTGAGACCCTTCGTGGTGAG 1 ACCCTTCGTGGTGAGACCAATCGTGGTGAGACCTTTCGTGGTGAG 1255937 ACCCTTCGTGGTGAGACCAATCGTGGTGAGACCTTTCGTGGTGAG 1 ACCCTTCGTGGTGAGACCAATCGTGGTGAGACCTTTCGTGGTGAG 1255982 ACCCTTCGTGGTGAGACCAATCGTGGTGAGACCTTTCGTGGTGAG 1 ACCCTTCGTGGTGAGACCAATCGTGGTGAGACCTTTCGTGGTGAG 1256027 ACCCTTCGTGGTGAGACCAATCGTGGTGAGACCTTTCGTGGTGAG 1 ACCCTTCGTGGTGAGACCAATCGTGGTGAGACCTTTCGTGGTGAG * 1256072 ACCCTTCGTGGTGAGACCCATCGTGGT 1 ACCCTTCGTGGTGAGACCAATCGTGGT 1256099 CAAATTTTCA Statistics Matches: 159, Mismatches: 3, Indels: 0 0.98 0.02 0.00 Matches are distributed among these distances: 45 159 1.00 ACGTcount: A:0.17, C:0.24, G:0.33, T:0.26 Consensus pattern (45 bp): ACCCTTCGTGGTGAGACCAATCGTGGTGAGACCTTTCGTGGTGAG Left flanking sequence: Indices 1255392 -- 1255891 TTTTTCCACATCTTACAGTGGTTAGAAATCAACAATCATTAACATATATAAAAAAATACAGTTCG TCTGTCCGGAGTTTGTAGTCTATGTAGTCTTTGTTTCTGCGGAAAGATATTGTGGCGGGAAATTT AAATAGGGCAAGTAAAAAATTTTGGCGGGAAATTCAAAATTTTTGTGGAAAAAACTTGGGGGGGG AAGTCAAATTTTGAGTGGTAAACAAAATTGGGGGGAAATTCCGAATTTTGAGGAAAATTGGGGAA AGTTTGGCAAGGTTCAGGAGGTTTTTGGAAAATTGGGGAAAATTCGGGATGGTTCAGGAATTTTT TGGAAAATTTGGGAAGATTTGGGATTAATTTTTTCAAATTTTACCGGGGGTTGGAATTCAACATT CTTTAACATATATAAAAAAATACAGTTCGTCTGTCCGGAGTTTGTAGTTTATGTAGTCTTTGTAG TCTGTGACGTCACGCCCAAATTTCAGTGAGAATAGTGGGCGTGGC Right flanking sequence: Indices 1256099 -- 1256598 CAAATTTTCAGTGAACAATTTTTGGCGGGAAATTCAAATTTTCAGTGAAAAAAATTTTGGCGGGA AATTCAAATTTTCAGTGAAAAACAATTTTGGCGGAAAATTCCAATTTCTGAGAAAAATCGAGAAA TGTCTGCAATGTTCCAGAAGTTTCTAGAAAATTCGAGAAAATTCCGGAATGGTCCAGAATTTTCT AGAAAATTCGAGAAAATTCCGGAATGGTCCAGAATTTTCTGGAAAATTCTAGAAAGTTCTGGAAT GGTCCAGAATTTTCTAGAAAATTCGGGAAAACTCTGGAATATTCCAGAACTTTCTAGAAAAATCG AGAAATGTCTGCAATGTTCCAGAAGTTTCTAGAAAATTCGAGAAAATTCCGGAATGGTCCAGAAT TTTCTAGAAAATTCGGGAAAATTCTGGAATAATTTTTTCCACATCTTACAGTGGTTAGAAATCAA CAATCATTAACATATATAAAAAAATACAGTTCGTCTGTCCGGAGT Found at i:1256191 original size:36 final size:35 Alignment explanation
Indices: 1256098--1256210 Score: 182 Period size: 35 Copynumber: 3.2 Consensus size: 35 1256088 CCCATCGTGG * * 1256098 TCAAATTTTCAGTG-AACAATTTTTGGCGGGAAAT 1 TCAAATTTTCAGTGAAAAAAATTTTGGCGGGAAAT 1256132 TCAAATTTTCAGTGAAAAAAATTTTGGCGGGAAAT 1 TCAAATTTTCAGTGAAAAAAATTTTGGCGGGAAAT * 1256167 TCAAATTTTCAGTGAAAAACAATTTTGGCGGAAAAT 1 TCAAATTTTCAGTGAAAAA-AATTTTGGCGGGAAAT * 1256203 TCCAATTT 1 TCAAATTT 1256211 CTGAGAAAAA Statistics Matches: 73, Mismatches: 4, Indels: 2 0.92 0.05 0.03 Matches are distributed among these distances: 34 14 0.19 35 37 0.51 36 22 0.30 ACGTcount: A:0.37, C:0.12, G:0.18, T:0.34 Consensus pattern (35 bp): TCAAATTTTCAGTGAAAAAAATTTTGGCGGGAAAT Left flanking sequence: Indices 1255598 -- 1256097 TGAGTGGTAAACAAAATTGGGGGGAAATTCCGAATTTTGAGGAAAATTGGGGAAAGTTTGGCAAG GTTCAGGAGGTTTTTGGAAAATTGGGGAAAATTCGGGATGGTTCAGGAATTTTTTGGAAAATTTG GGAAGATTTGGGATTAATTTTTTCAAATTTTACCGGGGGTTGGAATTCAACATTCTTTAACATAT ATAAAAAAATACAGTTCGTCTGTCCGGAGTTTGTAGTTTATGTAGTCTTTGTAGTCTGTGACGTC ACGCCCAAATTTCAGTGAGAATAGTGGGCGTGGCACCCTTCGTGGTGAGACCCATCGTGGTGAGA CCCTTCGTGGTGAGACCCTTCGTGGTGAGACCAATCGTGGTGAGACCTTTCGTGGTGAGACCCTT CGTGGTGAGACCAATCGTGGTGAGACCTTTCGTGGTGAGACCCTTCGTGGTGAGACCAATCGTGG TGAGACCTTTCGTGGTGAGACCCTTCGTGGTGAGACCCATCGTGG Right flanking sequence: Indices 1256211 -- 1256710 CTGAGAAAAATCGAGAAATGTCTGCAATGTTCCAGAAGTTTCTAGAAAATTCGAGAAAATTCCGG AATGGTCCAGAATTTTCTAGAAAATTCGAGAAAATTCCGGAATGGTCCAGAATTTTCTGGAAAAT TCTAGAAAGTTCTGGAATGGTCCAGAATTTTCTAGAAAATTCGGGAAAACTCTGGAATATTCCAG AACTTTCTAGAAAAATCGAGAAATGTCTGCAATGTTCCAGAAGTTTCTAGAAAATTCGAGAAAAT TCCGGAATGGTCCAGAATTTTCTAGAAAATTCGGGAAAATTCTGGAATAATTTTTTCCACATCTT ACAGTGGTTAGAAATCAACAATCATTAACATATATAAAAAAATACAGTTCGTCTGTCCGGAGTTT GTAGTCTATGTAGTCTTTGTAGTCTGTGACGTCACGCCCAAATTTCAGTGAGAATAGTGGGCGTG GCACCCTTCGTGGTGAGACCCATCGTGGTGAGACCCTTCGTGGTG Found at i:1256258 original size:40 final size:40 Alignment explanation
Indices: 1256208--1256518 Score: 445 Period size: 40 Copynumber: 7.8 Consensus size: 40 1256198 AAAATTCCAA * ** * * * 1256208 TTTCTGAGAAAAATCGAGAAATGTCTGCAATGTTCCAGAAG 1 TTTCT-AGAAAATTCGAGAAAATTCTGGAATGGTCCAGAAT * 1256249 TTTCTAGAAAATTCGAGAAAATTCCGGAATGGTCCAGAAT 1 TTTCTAGAAAATTCGAGAAAATTCTGGAATGGTCCAGAAT * 1256289 TTTCTAGAAAATTCGAGAAAATTCCGGAATGGTCCAGAAT 1 TTTCTAGAAAATTCGAGAAAATTCTGGAATGGTCCAGAAT * * * 1256329 TTTCTGGAAAATTCTAGAAAGTTCTGGAATGGTCCAGAAT 1 TTTCTAGAAAATTCGAGAAAATTCTGGAATGGTCCAGAAT * * ** * 1256369 TTTCTAGAAAATTCGGGAAAACTCTGGAATATTCCAGAAC 1 TTTCTAGAAAATTCGAGAAAATTCTGGAATGGTCCAGAAT * ** * * * 1256409 TTTCTAGAAAAATCGAGAAATGTCTGCAATGTTCCAGAAG 1 TTTCTAGAAAATTCGAGAAAATTCTGGAATGGTCCAGAAT * 1256449 TTTCTAGAAAATTCGAGAAAATTCCGGAATGGTCCAGAAT 1 TTTCTAGAAAATTCGAGAAAATTCTGGAATGGTCCAGAAT * 1256489 TTTCTAGAAAATTCGGGAAAATTCTGGAAT 1 TTTCTAGAAAATTCGAGAAAATTCTGGAAT 1256519 AATTTTTTCC Statistics Matches: 235, Mismatches: 35, Indels: 1 0.87 0.13 0.00 Matches are distributed among these distances: 40 230 0.98 41 5 0.02 ACGTcount: A:0.37, C:0.14, G:0.20, T:0.29 Consensus pattern (40 bp): TTTCTAGAAAATTCGAGAAAATTCTGGAATGGTCCAGAAT Left flanking sequence: Indices 1255708 -- 1256207 GGAATTTTTTGGAAAATTTGGGAAGATTTGGGATTAATTTTTTCAAATTTTACCGGGGGTTGGAA TTCAACATTCTTTAACATATATAAAAAAATACAGTTCGTCTGTCCGGAGTTTGTAGTTTATGTAG TCTTTGTAGTCTGTGACGTCACGCCCAAATTTCAGTGAGAATAGTGGGCGTGGCACCCTTCGTGG TGAGACCCATCGTGGTGAGACCCTTCGTGGTGAGACCCTTCGTGGTGAGACCAATCGTGGTGAGA CCTTTCGTGGTGAGACCCTTCGTGGTGAGACCAATCGTGGTGAGACCTTTCGTGGTGAGACCCTT CGTGGTGAGACCAATCGTGGTGAGACCTTTCGTGGTGAGACCCTTCGTGGTGAGACCCATCGTGG TCAAATTTTCAGTGAACAATTTTTGGCGGGAAATTCAAATTTTCAGTGAAAAAAATTTTGGCGGG AAATTCAAATTTTCAGTGAAAAACAATTTTGGCGGAAAATTCCAA Right flanking sequence: Indices 1256519 -- 1257018 AATTTTTTCCACATCTTACAGTGGTTAGAAATCAACAATCATTAACATATATAAAAAAATACAGT TCGTCTGTCCGGAGTTTGTAGTCTATGTAGTCTTTGTAGTCTGTGACGTCACGCCCAAATTTCAG TGAGAATAGTGGGCGTGGCACCCTTCGTGGTGAGACCCATCGTGGTGAGACCCTTCGTGGTGAGA CCCTTCGTGGTGAGACCAATCGTGGTGAGACCTTTCGTGGTGAGACCCTTCGTGGTGAGACCAAT CGTGGTGAGACCTTTCGTGGTGAGACCCTTCGTGGTGAGACCAATCGTGGTGAGACCCTTCGTGG TGAGACCCTTCATGGTGAGACCCATCGTGGTCAAATTTTCAGTGAACAATTTTTGGCGGGAAATT CAAATTTTCAGTGAAAAAAATTTTAGCGGGAAATTCAAATTTTCAGTAAAAAAAATTTTGGCGGG AAATTCAAATTTCTGAGAAAAATCGAGAAATGTCTGCAATGTTCC Found at i:1256691 original size:15 final size:15 Alignment explanation
Indices: 1256668--1256874 Score: 337 Period size: 15 Copynumber: 13.8 Consensus size: 15 1256658 TGGGCGTGGC 1256668 ACCCTTCGTGGTGAG 1 ACCCTTCGTGGTGAG * 1256683 ACCCATCGTGGTGAG 1 ACCCTTCGTGGTGAG 1256698 ACCCTTCGTGGTGAG 1 ACCCTTCGTGGTGAG 1256713 ACCCTTCGTGGTGAG 1 ACCCTTCGTGGTGAG ** 1256728 ACCAATCGTGGTGAG 1 ACCCTTCGTGGTGAG * 1256743 ACCTTTCGTGGTGAG 1 ACCCTTCGTGGTGAG 1256758 ACCCTTCGTGGTGAG 1 ACCCTTCGTGGTGAG ** 1256773 ACCAATCGTGGTGAG 1 ACCCTTCGTGGTGAG * 1256788 ACCTTTCGTGGTGAG 1 ACCCTTCGTGGTGAG 1256803 ACCCTTCGTGGTGAG 1 ACCCTTCGTGGTGAG ** 1256818 ACCAATCGTGGTGAG 1 ACCCTTCGTGGTGAG 1256833 ACCCTTCGTGGTGAG 1 ACCCTTCGTGGTGAG * 1256848 ACCCTTCATGGTGAG 1 ACCCTTCGTGGTGAG * 1256863 ACCCATCGTGGT 1 ACCCTTCGTGGT 1256875 CAAATTTTCA Statistics Matches: 173, Mismatches: 19, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 15 173 1.00 ACGTcount: A:0.17, C:0.25, G:0.32, T:0.26 Consensus pattern (15 bp): ACCCTTCGTGGTGAG Left flanking sequence: Indices 1256168 -- 1256667 CAAATTTTCAGTGAAAAACAATTTTGGCGGAAAATTCCAATTTCTGAGAAAAATCGAGAAATGTC TGCAATGTTCCAGAAGTTTCTAGAAAATTCGAGAAAATTCCGGAATGGTCCAGAATTTTCTAGAA AATTCGAGAAAATTCCGGAATGGTCCAGAATTTTCTGGAAAATTCTAGAAAGTTCTGGAATGGTC CAGAATTTTCTAGAAAATTCGGGAAAACTCTGGAATATTCCAGAACTTTCTAGAAAAATCGAGAA ATGTCTGCAATGTTCCAGAAGTTTCTAGAAAATTCGAGAAAATTCCGGAATGGTCCAGAATTTTC TAGAAAATTCGGGAAAATTCTGGAATAATTTTTTCCACATCTTACAGTGGTTAGAAATCAACAAT CATTAACATATATAAAAAAATACAGTTCGTCTGTCCGGAGTTTGTAGTCTATGTAGTCTTTGTAG TCTGTGACGTCACGCCCAAATTTCAGTGAGAATAGTGGGCGTGGC Right flanking sequence: Indices 1256875 -- 1257374 CAAATTTTCAGTGAACAATTTTTGGCGGGAAATTCAAATTTTCAGTGAAAAAAATTTTAGCGGGA AATTCAAATTTTCAGTAAAAAAAATTTTGGCGGGAAATTCAAATTTCTGAGAAAAATCGAGAAAT GTCTGCAATGTTCCAGAAGTTTCTAGAAAATTCGAGAAAATTCCGGAATGGTCCAGAATTTTCTA GAAAGTTCTAGAAAGTTCTGGAATGGTCCAGAATTTTCTAGAAAATTCGGGAAAACTCTGGAATA TTCCAGTACTTTCTAGAAAAATCGAGAAAATTTTCAGTGAACAATTTTTGGCGGGAAATTCAAAT TTTCAGTGAAAAAAATTTTAGCGGGAAATTCAAATTTTCAGTAAAAAAAATTTTGGCGGGAAATT CAAATTTTCAGTGAAAAAAATTTTAGCGGGAAATTCAAATTTTCAGTAAAAAAAATTTTGGCGGG AAATTCAAATTTTCAGTGAAAAAATTTGGGCGGGAAATTCAAATT Found at i:1256717 original size:45 final size:45 Alignment explanation
Indices: 1256668--1256874 Score: 379 Period size: 45 Copynumber: 4.6 Consensus size: 45 1256658 TGGGCGTGGC * 1256668 ACCCTTCGTGGTGAGACCCATCGTGGTGAGACCCTTCGTGGTGAG 1 ACCCTTCGTGGTGAGACCAATCGTGGTGAGACCCTTCGTGGTGAG * 1256713 ACCCTTCGTGGTGAGACCAATCGTGGTGAGACCTTTCGTGGTGAG 1 ACCCTTCGTGGTGAGACCAATCGTGGTGAGACCCTTCGTGGTGAG * 1256758 ACCCTTCGTGGTGAGACCAATCGTGGTGAGACCTTTCGTGGTGAG 1 ACCCTTCGTGGTGAGACCAATCGTGGTGAGACCCTTCGTGGTGAG 1256803 ACCCTTCGTGGTGAGACCAATCGTGGTGAGACCCTTCGTGGTGAG 1 ACCCTTCGTGGTGAGACCAATCGTGGTGAGACCCTTCGTGGTGAG * * 1256848 ACCCTTCATGGTGAGACCCATCGTGGT 1 ACCCTTCGTGGTGAGACCAATCGTGGT 1256875 CAAATTTTCA Statistics Matches: 157, Mismatches: 5, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 45 157 1.00 ACGTcount: A:0.17, C:0.25, G:0.32, T:0.26 Consensus pattern (45 bp): ACCCTTCGTGGTGAGACCAATCGTGGTGAGACCCTTCGTGGTGAG Left flanking sequence: Indices 1256168 -- 1256667 CAAATTTTCAGTGAAAAACAATTTTGGCGGAAAATTCCAATTTCTGAGAAAAATCGAGAAATGTC TGCAATGTTCCAGAAGTTTCTAGAAAATTCGAGAAAATTCCGGAATGGTCCAGAATTTTCTAGAA AATTCGAGAAAATTCCGGAATGGTCCAGAATTTTCTGGAAAATTCTAGAAAGTTCTGGAATGGTC CAGAATTTTCTAGAAAATTCGGGAAAACTCTGGAATATTCCAGAACTTTCTAGAAAAATCGAGAA ATGTCTGCAATGTTCCAGAAGTTTCTAGAAAATTCGAGAAAATTCCGGAATGGTCCAGAATTTTC TAGAAAATTCGGGAAAATTCTGGAATAATTTTTTCCACATCTTACAGTGGTTAGAAATCAACAAT CATTAACATATATAAAAAAATACAGTTCGTCTGTCCGGAGTTTGTAGTCTATGTAGTCTTTGTAG TCTGTGACGTCACGCCCAAATTTCAGTGAGAATAGTGGGCGTGGC Right flanking sequence: Indices 1256875 -- 1257374 CAAATTTTCAGTGAACAATTTTTGGCGGGAAATTCAAATTTTCAGTGAAAAAAATTTTAGCGGGA AATTCAAATTTTCAGTAAAAAAAATTTTGGCGGGAAATTCAAATTTCTGAGAAAAATCGAGAAAT GTCTGCAATGTTCCAGAAGTTTCTAGAAAATTCGAGAAAATTCCGGAATGGTCCAGAATTTTCTA GAAAGTTCTAGAAAGTTCTGGAATGGTCCAGAATTTTCTAGAAAATTCGGGAAAACTCTGGAATA TTCCAGTACTTTCTAGAAAAATCGAGAAAATTTTCAGTGAACAATTTTTGGCGGGAAATTCAAAT TTTCAGTGAAAAAAATTTTAGCGGGAAATTCAAATTTTCAGTAAAAAAAATTTTGGCGGGAAATT CAAATTTTCAGTGAAAAAAATTTTAGCGGGAAATTCAAATTTTCAGTAAAAAAAATTTTGGCGGG AAATTCAAATTTTCAGTGAAAAAATTTGGGCGGGAAATTCAAATT Found at i:1256945 original size:35 final size:35 Alignment explanation
Indices: 1256874--1256985 Score: 189 Period size: 35 Copynumber: 3.2 Consensus size: 35 1256864 CCCATCGTGG * * 1256874 TCAAATTTTCAGTG-AACAATTTTTGGCGGGAAAT 1 TCAAATTTTCAGTGAAAAAAATTTTGGCGGGAAAT * 1256908 TCAAATTTTCAGTGAAAAAAATTTTAGCGGGAAAT 1 TCAAATTTTCAGTGAAAAAAATTTTGGCGGGAAAT * 1256943 TCAAATTTTCAGTAAAAAAAATTTTGGCGGGAAAT 1 TCAAATTTTCAGTGAAAAAAATTTTGGCGGGAAAT 1256978 TCAAATTT 1 TCAAATTT 1256986 CTGAGAAAAA Statistics Matches: 72, Mismatches: 5, Indels: 1 0.92 0.06 0.01 Matches are distributed among these distances: 34 14 0.19 35 58 0.81 ACGTcount: A:0.39, C:0.10, G:0.17, T:0.34 Consensus pattern (35 bp): TCAAATTTTCAGTGAAAAAAATTTTGGCGGGAAAT Left flanking sequence: Indices 1256374 -- 1256873 AGAAAATTCGGGAAAACTCTGGAATATTCCAGAACTTTCTAGAAAAATCGAGAAATGTCTGCAAT GTTCCAGAAGTTTCTAGAAAATTCGAGAAAATTCCGGAATGGTCCAGAATTTTCTAGAAAATTCG GGAAAATTCTGGAATAATTTTTTCCACATCTTACAGTGGTTAGAAATCAACAATCATTAACATAT ATAAAAAAATACAGTTCGTCTGTCCGGAGTTTGTAGTCTATGTAGTCTTTGTAGTCTGTGACGTC ACGCCCAAATTTCAGTGAGAATAGTGGGCGTGGCACCCTTCGTGGTGAGACCCATCGTGGTGAGA CCCTTCGTGGTGAGACCCTTCGTGGTGAGACCAATCGTGGTGAGACCTTTCGTGGTGAGACCCTT CGTGGTGAGACCAATCGTGGTGAGACCTTTCGTGGTGAGACCCTTCGTGGTGAGACCAATCGTGG TGAGACCCTTCGTGGTGAGACCCTTCATGGTGAGACCCATCGTGG Right flanking sequence: Indices 1256986 -- 1257485 CTGAGAAAAATCGAGAAATGTCTGCAATGTTCCAGAAGTTTCTAGAAAATTCGAGAAAATTCCGG AATGGTCCAGAATTTTCTAGAAAGTTCTAGAAAGTTCTGGAATGGTCCAGAATTTTCTAGAAAAT TCGGGAAAACTCTGGAATATTCCAGTACTTTCTAGAAAAATCGAGAAAATTTTCAGTGAACAATT TTTGGCGGGAAATTCAAATTTTCAGTGAAAAAAATTTTAGCGGGAAATTCAAATTTTCAGTAAAA AAAATTTTGGCGGGAAATTCAAATTTTCAGTGAAAAAAATTTTAGCGGGAAATTCAAATTTTCAG TAAAAAAAATTTTGGCGGGAAATTCAAATTTTCAGTGAAAAAATTTGGGCGGGAAATTCAAATTT TCAGTGAAAAAAAATTTAGCGGGAAATTCAAATTTTCAGTGAAAAAAATTTTAGCGGGAAATTCA AATTTTCAGTAAAAAAAATTTTGGCGGGAAATTCAAATTTTCAGT Found at i:1257040 original size:40 final size:40 Alignment explanation
Indices: 1256983--1257166 Score: 240 Period size: 40 Copynumber: 4.6 Consensus size: 40 1256973 GAAATTCAAA * ** * * * 1256983 TTTCTGAGAAAAATCGAGAAATGTCTGCAATGTTCCAGAAG 1 TTTCT-AGAAAATTCGAGAAAATTCTGGAATGGTCCAGAAT * 1257024 TTTCTAGAAAATTCGAGAAAATTCCGGAATGGTCCAGAAT 1 TTTCTAGAAAATTCGAGAAAATTCTGGAATGGTCCAGAAT * * * 1257064 TTTCTAGAAAGTTCTAGAAAGTTCTGGAATGGTCCAGAAT 1 TTTCTAGAAAATTCGAGAAAATTCTGGAATGGTCCAGAAT * * ** * * 1257104 TTTCTAGAAAATTCGGGAAAACTCTGGAATATTCCAGTAC 1 TTTCTAGAAAATTCGAGAAAATTCTGGAATGGTCCAGAAT * 1257144 TTTCTAGAAAAATCGAGAAAATT 1 TTTCTAGAAAATTCGAGAAAATT 1257167 TTCAGTGAAC Statistics Matches: 120, Mismatches: 23, Indels: 1 0.83 0.16 0.01 Matches are distributed among these distances: 40 115 0.96 41 5 0.04 ACGTcount: A:0.37, C:0.14, G:0.20, T:0.29 Consensus pattern (40 bp): TTTCTAGAAAATTCGAGAAAATTCTGGAATGGTCCAGAAT Left flanking sequence: Indices 1256483 -- 1256982 CAGAATTTTCTAGAAAATTCGGGAAAATTCTGGAATAATTTTTTCCACATCTTACAGTGGTTAGA AATCAACAATCATTAACATATATAAAAAAATACAGTTCGTCTGTCCGGAGTTTGTAGTCTATGTA GTCTTTGTAGTCTGTGACGTCACGCCCAAATTTCAGTGAGAATAGTGGGCGTGGCACCCTTCGTG GTGAGACCCATCGTGGTGAGACCCTTCGTGGTGAGACCCTTCGTGGTGAGACCAATCGTGGTGAG ACCTTTCGTGGTGAGACCCTTCGTGGTGAGACCAATCGTGGTGAGACCTTTCGTGGTGAGACCCT TCGTGGTGAGACCAATCGTGGTGAGACCCTTCGTGGTGAGACCCTTCATGGTGAGACCCATCGTG GTCAAATTTTCAGTGAACAATTTTTGGCGGGAAATTCAAATTTTCAGTGAAAAAAATTTTAGCGG GAAATTCAAATTTTCAGTAAAAAAAATTTTGGCGGGAAATTCAAA Right flanking sequence: Indices 1257167 -- 1257666 TTCAGTGAACAATTTTTGGCGGGAAATTCAAATTTTCAGTGAAAAAAATTTTAGCGGGAAATTCA AATTTTCAGTAAAAAAAATTTTGGCGGGAAATTCAAATTTTCAGTGAAAAAAATTTTAGCGGGAA ATTCAAATTTTCAGTAAAAAAAATTTTGGCGGGAAATTCAAATTTTCAGTGAAAAAATTTGGGCG GGAAATTCAAATTTTCAGTGAAAAAAAATTTAGCGGGAAATTCAAATTTTCAGTGAAAAAAATTT TAGCGGGAAATTCAAATTTTCAGTAAAAAAAATTTTGGCGGGAAATTCAAATTTTCAGTGAAAAA AATTTTGGCGGGAAATTCAAATTTTCAGTGAAAAAAAATTTTAGCGGGAAATTCAAATTTGCAGT GTAAAAAATTTTGGCGGGAAATTCAAATTTTCTGTGAAAAAAATTTTGGCGGGAAATTCAAATTT TCAGTGAAAAACAATTTTGGCGGAAAATTCCAATTTCTGAGAAAA Found at i:1257667 original size:35 final size:35 Alignment explanation
Indices: 1257162--1257657 Score: 841 Period size: 35 Copynumber: 14.2 Consensus size: 35 1257152 AAAATCGAGA * * 1257162 AAATTTTCAGTG-AACAATTTTTGGCGGGAAATTC 1 AAATTTTCAGTGAAAAAAATTTTGGCGGGAAATTC * 1257196 AAATTTTCAGTGAAAAAAATTTTAGCGGGAAATTC 1 AAATTTTCAGTGAAAAAAATTTTGGCGGGAAATTC * 1257231 AAATTTTCAGTAAAAAAAATTTTGGCGGGAAATTC 1 AAATTTTCAGTGAAAAAAATTTTGGCGGGAAATTC * 1257266 AAATTTTCAGTGAAAAAAATTTTAGCGGGAAATTC 1 AAATTTTCAGTGAAAAAAATTTTGGCGGGAAATTC * 1257301 AAATTTTCAGTAAAAAAAATTTTGGCGGGAAATTC 1 AAATTTTCAGTGAAAAAAATTTTGGCGGGAAATTC * 1257336 AAATTTTCAGTG-AAAAAATTTGGGCGGGAAATTC 1 AAATTTTCAGTGAAAAAAATTTTGGCGGGAAATTC * * 1257370 AAATTTTCAGTGAAAAAAAATTTAGCGGGAAATTC 1 AAATTTTCAGTGAAAAAAATTTTGGCGGGAAATTC * 1257405 AAATTTTCAGTGAAAAAAATTTTAGCGGGAAATTC 1 AAATTTTCAGTGAAAAAAATTTTGGCGGGAAATTC * 1257440 AAATTTTCAGTAAAAAAAATTTTGGCGGGAAATTC 1 AAATTTTCAGTGAAAAAAATTTTGGCGGGAAATTC 1257475 AAATTTTCAGTGAAAAAAATTTTGGCGGGAAATTC 1 AAATTTTCAGTGAAAAAAATTTTGGCGGGAAATTC * 1257510 AAATTTTCAGTGAAAAAAAATTTTAGCGGGAAATTC 1 AAATTTTCAGTG-AAAAAAATTTTGGCGGGAAATTC * * 1257546 AAATTTGCAGTGTAAAAAATTTTGGCGGGAAATTC 1 AAATTTTCAGTGAAAAAAATTTTGGCGGGAAATTC * 1257581 AAATTTTCTGTGAAAAAAATTTTGGCGGGAAATTC 1 AAATTTTCAGTGAAAAAAATTTTGGCGGGAAATTC * 1257616 AAATTTTCAGTGAAAAACAATTTTGGCGGAAAATTC 1 AAATTTTCAGTGAAAAA-AATTTTGGCGGGAAATTC * 1257652 CAATTT 1 AAATTT 1257658 CTGAGAAAAA Statistics Matches: 430, Mismatches: 28, Indels: 6 0.93 0.06 0.01 Matches are distributed among these distances: 34 45 0.10 35 330 0.77 36 55 0.13 ACGTcount: A:0.41, C:0.09, G:0.18, T:0.32 Consensus pattern (35 bp): AAATTTTCAGTGAAAAAAATTTTGGCGGGAAATTC Left flanking sequence: Indices 1256662 -- 1257161 CGTGGCACCCTTCGTGGTGAGACCCATCGTGGTGAGACCCTTCGTGGTGAGACCCTTCGTGGTGA GACCAATCGTGGTGAGACCTTTCGTGGTGAGACCCTTCGTGGTGAGACCAATCGTGGTGAGACCT TTCGTGGTGAGACCCTTCGTGGTGAGACCAATCGTGGTGAGACCCTTCGTGGTGAGACCCTTCAT GGTGAGACCCATCGTGGTCAAATTTTCAGTGAACAATTTTTGGCGGGAAATTCAAATTTTCAGTG AAAAAAATTTTAGCGGGAAATTCAAATTTTCAGTAAAAAAAATTTTGGCGGGAAATTCAAATTTC TGAGAAAAATCGAGAAATGTCTGCAATGTTCCAGAAGTTTCTAGAAAATTCGAGAAAATTCCGGA ATGGTCCAGAATTTTCTAGAAAGTTCTAGAAAGTTCTGGAATGGTCCAGAATTTTCTAGAAAATT CGGGAAAACTCTGGAATATTCCAGTACTTTCTAGAAAAATCGAGA Right flanking sequence: Indices 1257658 -- 1258157 CTGAGAAAAATCGAGAAATGTCTGCAATGTTCCAGAAGTTTCTAGAAAATTCGAGAAAATTCCGG AATGGTCCAGAATTTTCTAGAAAATTCGGGAAAATTCTGGAATATTCCAGAACTTTCTAGAAAAA TCGGGAAAACTCTGGAATATTCCAGAACTTTCTAGAAAAATCGAGAAATGTCTGCAATGTTCCAG AAGTTTCTAGAAAATTCGAGAAAATTCCGGAATGGTCCAGAATTTTCTAGAAAATTCGGGAAAAT TCTGGAATATTCCAGAACTTTCTAGAAAAATCGGGAAAAGTCGGCAATGTTCTAGAACTTTCTAG GAAATTCGAGAAAATTCCGGAATGGTCCAGAATTTTCTAGAAAATTCTAGAAAGTTCTGGAATGG TCCAGAATTTTCTAGAAAATTCGGGAAAATTCTGGAATATTCCAGAACTTTCTAGAAAAATCGGG AAAAGTCTGCAATGTTCCAGAACTCTCTAAAAAATTCGATAAAAT Found at i:1257705 original size:40 final size:40 Alignment explanation
Indices: 1257655--1258169 Score: 685 Period size: 40 Copynumber: 12.8 Consensus size: 40 1257645 AAAATTCCAA * ** * * 1257655 TTTCTGAGAAAAATCGAGAAATGTCTGCAATGTTCCAGAAG 1 TTTCT-AGAAAATTCGAGAAAATTCTGGAATGTTCCAGAAC * * * 1257696 TTTCTAGAAAATTCGAGAAAATTCCGGAATGGTCCAGAAT 1 TTTCTAGAAAATTCGAGAAAATTCTGGAATGTTCCAGAAC * * 1257736 TTTCTAGAAAATTCGGGAAAATTCTGGAATATTCCAGAAC 1 TTTCTAGAAAATTCGAGAAAATTCTGGAATGTTCCAGAAC * * * * 1257776 TTTCTAGAAAAATCGGGAAAACTCTGGAATATTCCAGAAC 1 TTTCTAGAAAATTCGAGAAAATTCTGGAATGTTCCAGAAC * ** * * 1257816 TTTCTAGAAAAATCGAGAAATGTCTGCAATGTTCCAGAAG 1 TTTCTAGAAAATTCGAGAAAATTCTGGAATGTTCCAGAAC * * * 1257856 TTTCTAGAAAATTCGAGAAAATTCCGGAATGGTCCAGAAT 1 TTTCTAGAAAATTCGAGAAAATTCTGGAATGTTCCAGAAC * * 1257896 TTTCTAGAAAATTCGGGAAAATTCTGGAATATTCCAGAAC 1 TTTCTAGAAAATTCGAGAAAATTCTGGAATGTTCCAGAAC * * * * * * 1257936 TTTCTAGAAAAATCGGGAAAAGTCGGCAATGTTCTAGAAC 1 TTTCTAGAAAATTCGAGAAAATTCTGGAATGTTCCAGAAC * * * * 1257976 TTTCTAGGAAATTCGAGAAAATTCCGGAATGGTCCAGAAT 1 TTTCTAGAAAATTCGAGAAAATTCTGGAATGTTCCAGAAC * * * * 1258016 TTTCTAGAAAATTCTAGAAAGTTCTGGAATGGTCCAGAAT 1 TTTCTAGAAAATTCGAGAAAATTCTGGAATGTTCCAGAAC * * 1258056 TTTCTAGAAAATTCGGGAAAATTCTGGAATATTCCAGAAC 1 TTTCTAGAAAATTCGAGAAAATTCTGGAATGTTCCAGAAC * * * * 1258096 TTTCTAGAAAAATCGGGAAAAGTCTGCAATGTTCCAGAAC 1 TTTCTAGAAAATTCGAGAAAATTCTGGAATGTTCCAGAAC * * * * 1258136 TCTCTAAAAAATTCGATAAAATTCTGAAATGTTC 1 TTTCTAGAAAATTCGAGAAAATTCTGGAATGTTC 1258170 AATTTCGTGG Statistics Matches: 406, Mismatches: 68, Indels: 1 0.85 0.14 0.00 Matches are distributed among these distances: 40 401 0.99 41 5 0.01 ACGTcount: A:0.37, C:0.15, G:0.19, T:0.28 Consensus pattern (40 bp): TTTCTAGAAAATTCGAGAAAATTCTGGAATGTTCCAGAAC Left flanking sequence: Indices 1257155 -- 1257654 ATCGAGAAAATTTTCAGTGAACAATTTTTGGCGGGAAATTCAAATTTTCAGTGAAAAAAATTTTA GCGGGAAATTCAAATTTTCAGTAAAAAAAATTTTGGCGGGAAATTCAAATTTTCAGTGAAAAAAA TTTTAGCGGGAAATTCAAATTTTCAGTAAAAAAAATTTTGGCGGGAAATTCAAATTTTCAGTGAA AAAATTTGGGCGGGAAATTCAAATTTTCAGTGAAAAAAAATTTAGCGGGAAATTCAAATTTTCAG TGAAAAAAATTTTAGCGGGAAATTCAAATTTTCAGTAAAAAAAATTTTGGCGGGAAATTCAAATT TTCAGTGAAAAAAATTTTGGCGGGAAATTCAAATTTTCAGTGAAAAAAAATTTTAGCGGGAAATT CAAATTTGCAGTGTAAAAAATTTTGGCGGGAAATTCAAATTTTCTGTGAAAAAAATTTTGGCGGG AAATTCAAATTTTCAGTGAAAAACAATTTTGGCGGAAAATTCCAA Right flanking sequence: Indices 1258170 -- 1258669 AATTTCGTGGAAAAATTCAAGAAACTTCTGCAAAGTTCTACACGGGGTTCTGGCTCGACCCCGCG CTCCATTGGACACTGAAATGGCGGGAAAAAACTTTGAAATCGCAAGAGGAATTTTCACGCAGCGC GTTGAAAAAAGTGTATGCATTTGCGCGTGACGGTGTTTCTTCAAGTTTTGATACTCCTAGAATAT TCTGAAGTTTCAATAATTTTAAAAAAATATCAAAAATTGTTATAATTTTCAGAAACGCTCGCCAA AAACTTTCGGAAAGGACCGGAAAATTTTCATATGATTTGAAGAACATAGAGAAAATTATACGTTC AAGAAATTTAGAAATAGTTCCAGGAAACTTGAGGTTTTAAGTTGTAATTGCTCAGAACTTAGTTA TATAATATTTATGTTGCTCGAAAATTTCCGGTAACCAGGGAAAAAACGTTCCATCTGCAAAGAAG GCTTAGAAAATTTAGAATTTGATTTCAATTTTGAGTACGCCAGTC Found at