TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_V Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 20922231 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:8367979 original size:18 final size:18 Alignment explanation
Indices: 8367953--8367998 Score: 78 Period size: 18 Copynumber: 2.6 Consensus size: 18 8367943 TTCTGAAAAT 8367953 TAGTATTGCACTCCCTAA 1 TAGTATTGCACTCCCTAA * * 8367971 TAGTCTTGCACTCCCTAT 1 TAGTATTGCACTCCCTAA 8367989 TAGTATTGCA 1 TAGTATTGCA 8367999 AGCGGGATGA Statistics Matches: 25, Mismatches: 3, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 18 25 1.00 ACGTcount: A:0.24, C:0.26, G:0.13, T:0.37 Consensus pattern (18 bp): TAGTATTGCACTCCCTAA Left flanking sequence: Indices 8367453 -- 8367952 ACTGCACAAGAGGCCCAAACACAAAATCAATAGATAAAAGTATTTGTTAATTGAATGACTTACAA CTGGAATAGTCTTCTCAAATTAAAACAAATTAAATAAATATAATATCGCACAACAGATTTGAGAG ATTTTGAAAATACCAACAAAAAGAAATACCGTATCTTCTATTAATATGGCCTCCCTATTAGACTT GCACTCCCTATTAGTATTGCCCCTCGGAGACCTTCCGAAAATTAGTATGGCACTCCCTATTAGTC TTGCACTCCCTAATAGTCTTGCGTTTACTCTTTTTTATTGCAGGCCCGTCTCGTTAATTTCAGGA TTTCAACAAAAAAATTGCCTATTTTGCTATAGTTTTTCACAAAATTTCTATGAGATTGAAGTTTT TGAACTTATATGTTACAATTAAAATCAAATTTTCTGAATTTTTACATAAAGATTCGAGCTTTTTC AGAAAAAAACTAGTAAGCTCAAAGTCAGAAAAATGTTCTGAAAAT Right flanking sequence: Indices 8367999 -- 8368498 AGCGGGATGACCATCGAAAAATAGTATTGCAGCCATATTAATAGAAGAAATACGGTAAGTCAACT TAATAAATATTGCTTAATTTTTGTTGATTTTATTTTAGATTTAAAATTTAAAAAATTCAACTAAC AAACTTTTTTGTTGTTGATGTGTAACATATAAATCAAATTATTTTCTTATTCAATAGGTATCACA AAATCAAAAGAGCATCAATACTTTTTCAACCCACAATGTTTTATTTCCCAGGAAACAAATAAATA TCTTGAGTTTGTTTCATTGACGGCTACGGCTCAGGAGGGAAACCAGATGGGAAACAAAATGTATT GGATAACCTTTTAATTTGAGAAACCAGATTCATTTTATTATTTTGGCAATTATCAAAAAATTAAT TTAGTTAAAAAGGTTTCTATGCACGGAGCCTCATAATCTAGAATACTTAAAAGTTCAATATAATT TTTTCTACACATTCTTACATTTCTGTATTGTTTCCCGTTAACAAA Found at i:8374121 original size:12 final size:12 Alignment explanation
Indices: 8374101--8374134 Score: 47 Period size: 12 Copynumber: 2.8 Consensus size: 12 8374091 AATCTGAAGC * 8374101 TTTTCTGAATTT 1 TTTTCTGAAATT * 8374113 TTTTTTGAAATT 1 TTTTCTGAAATT * 8374125 TTTGCTGAAA 1 TTTTCTGAAA 8374135 ACATAAGTAC Statistics Matches: 18, Mismatches: 4, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 12 18 1.00 ACGTcount: A:0.24, C:0.06, G:0.12, T:0.59 Consensus pattern (12 bp): TTTTCTGAAATT Left flanking sequence: Indices 8373601 -- 8374100 AAAATGGGTCTGTGCCAAAGTGAGGAGGAAAAAGTTGGAACACTGAAAAGTCGTGCAATTGATAA GGAGATAAAACAGTTGCAAACAAGCGAGGAACGAACTGTCAAACTATTATTGCTAGGTTTGTAAA TTATCTCATAAATACAATTTTTATTTACAATCAAATTCTGTCCATAATTAAAATGACGCCAGTTA ACAGAAGGTTGCCATGGTACTAGACATGACTATGTGGGATTGAATACACATGTTAATAGTCTGTT ATAAAGTGTTCAAAAACGAAACAATAAAATGAAAATCAACGAAAATATACGTTCAAAAATAATAC GTAAATTAATATTTTAATACAATAAAGGCGGATTAATCCGGATATTTGAGGCGTATGTGGGAAAA TGAATGATGTGTACTTAAAAGTAATAAGTTAATTTTTTTGCAAAAATGTAAGATGATATGAAAAA AGTGTATTTAAATAATTATGGAAACCGTTGAGAAGAATCTGAAGC Right flanking sequence: Indices 8374135 -- 8374634 ACATAAGTACCGAATGTTCAAAATTTTTAAAACTGTACTTATTTATTTTTTGTAGTACTGTTTAT GGTATTTTTTCACATTAAAATTATTGAAAAAAAGAGTTCTCAACAGCAATCGCCCTTTTGAATTT GTTTCTTCTAGTCTCTCAACATACATAATCTTTTTTTCAAACAGAACAATGATTATCACCAGACT AGAAAAAAATATCTCATGCGTAATTTCTACTTATTTTCTTTATTGTCTTTTCAATTCACAAATCA AAAATAAACTGATGGTGACTAAACCGAAATAAAATTCATGTGTCATCAGTTTACGTCAGATGACG TTGGATTCTCTAGATAGTTGTGCATTGCGATTTTGTGTTTGTTTGTTTGTTCCTCCTATATCTAA ACTTCATGTGAAGAATGAAAAGACAAAGGATTTCGTGAGAATGAGGGCTCAAAAGTGCACAAGGA CTTTGATTAAATTCAATTTAAATTTCGATTCACACTTAGAAATCA Found at i:8380268 original size:13 final size:13 Alignment explanation
Indices: 8380250--8380278 Score: 42 Period size: 13 Copynumber: 2.2 Consensus size: 13 8380240 GAAAATGAAT 8380250 GAAATGATTTC-AG 1 GAAATG-TTTCAAG 8380263 GAAATGTTTCAAG 1 GAAATGTTTCAAG 8380276 GAA 1 GAA 8380279 TCAAATGCGG Statistics Matches: 15, Mismatches: 0, Indels: 2 0.88 0.00 0.12 Matches are distributed among these distances: 12 4 0.27 13 11 0.73 ACGTcount: A:0.41, C:0.07, G:0.24, T:0.28 Consensus pattern (13 bp): GAAATGTTTCAAG Left flanking sequence: Indices 8379750 -- 8380249 CTCGAGTTACGATTCGCTTCAAAGGAACTCTGAAATTCGCATCTTTATCATGTCATAAAGGAATC GAAATGGGATGGAAAGACGATTGTGAGAGTTGGTTTTACATGCTTCTTGACTTGATTGTTCCATT TGGATTAGTTTGGCGAGGAGCGAATGACAAGGATACTGTTTGTAAACTGAAAGAAGAGGCACGTG GAAAGAAGGTTAGTGAATATGTTTTCTTTTGTCACTAGCCCTCCTAGCGGAATTCCAGAAGCACG GCAAACTGTAAGTTTCAGGCACTTTTTCAAGTTCATAAAATTAAATATTATTTTCAGATGGAACA TACCATTTTTTACTTTTTTATACCAATTTTAGATCAAAAATTTGGATTTTCTTGTTGAAATAAGC AGTTTGGTGAATTCGCGGAAAAAATTCGCCGCTCAGTTGCCGCCGCCACCTCCGCCTACCTCGCC CCACGCGGAATACCTAGCCTGTCAATTTTTCCACAGAAAATGAAT Right flanking sequence: Indices 8380279 -- 8380778 TCAAATGCGGTGTAGAACTGAATAAAATCATTGTTTATATTGATAAGCTACAATATCAGGATCAC GTTGACTATCAGTACATCTACAAGACTCTCGTTGACGTATGTTTCCAATTTAATTGCTGAAATTA TCTTTTTTTTCGTGTTTTTAGGCATGTGATACTTGTGGAGGGAACATGGATGCACCATACGATTG GGAATGATGATTTTTGAAATGATTCTTGGTTCATAAAGCTGAAATAAAGAACTATGAAGTGTCCA ATTTTATGCGTTGAGTTTATGGTTATGGTGGTGAATAAGAGTAATTAAAGCTACATAGCTAAGGC ATTTAGGTCAAAAATAGCATTAAAAGTTGTGAGTAGGCAAGAGGTTTGTGATGTTCAAAATACCT GACAAGAATTTTTAGATTTTTTACAAAAAAATTAAAATTTTCCAAAAATCTCCCAGATTGTTTTC CTACTTTTAAACGTGCTGAAAAACATTGAAAGTTTGCAAGAAATA Found at i:8385694 original size:13 final size:13 Alignment explanation
Indices: 8385672--8385697 Score: 45 Period size: 13 Copynumber: 2.0 Consensus size: 13 8385662 TCTGTTTCGT 8385672 TTTATTTATGTAA 1 TTTATTTATGTAA * 8385685 TTTGTTTATGTAA 1 TTTATTTATGTAA 8385698 CCACTTGTGA Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 13 12 1.00 ACGTcount: A:0.27, C:0.00, G:0.12, T:0.62 Consensus pattern (13 bp): TTTATTTATGTAA Left flanking sequence: Indices 8385172 -- 8385671 GTAGTGTCTTCTCCGACAAAAAAATCGGATGAGAAAGCAATAGAGTCTGTACAAAACGCATTCAC TAGGCGCCTTTATAGTAGAATCAAAAAAAGATATATTAATCCAACTGATAAAGATTACAAAACTG CCATGGAACGTAACGAACTATTCGACCTCCAAACCTTAAGCACGAGACGTAAAATAATTGACAGA ATCCAAGTAACCAGAATGAATACTGGTAAAGTAGACTTAAAAACATCTGAGTTTTTTGAGCAACA AGAGACCCAAACTCGTTCTAAAAAGAAATATATCTGGAGCACAGGAAAATCTAAACTTAGGAGAC ACTTTTTTGTCAACAGAACACTACCCACAATGAAGCAACACTGATCTAATGTTACCTTATCCTCA CTTCTATCCATCATTTATTCTTGCCGTTTATACATCGATATTTGTGTTTTTTGCTTCTTCTCCAA TGTAGCCATTATTTTCTTCTCATCTCTTTTTTATTTCTGTTTCGT Right flanking sequence: Indices 8385698 -- 8386197 CCACTTGTGATGGTTTGTATCTATTAATGTGTGTTCTTTTTTTCTCTACCTCACGATATCTTACT ATCGTAATAAATTAAATTAAATTAAATTAAATCCAATGGGCATTGCTCCCCCTTAATAGGTACAC TAAAAAATGTAAGTCTGTAAATTTCAGGGAAAATGTTTCGGAAGTGAGCTTGGACTATGTGACTG TAATGCTTGCATTACTAACAAAAAGTGCAGCAGTGATTTGGATTGTGGTGGCCTACGAAATGGTT GTGATTCCAATGGAAATTGTGATTGTGTCAATGCATTCCATTCTCACGGATACAAACTTTTCGTC AAAGTACTTCTGACATTCTGCCATCAAACAAAATGTACAAAAACATCAGACAATTGTTATGGTCT TCCATGCCGAGTCGGAAAATGCAAATGTTTTGTTGGTTCTGGAGTTGGCTCAAAACTACCTGTGC ATTATTTCAAGCCAGCTGGAAAATAATTATCATTCAATGTAGATA Found at i:8386486 original size:12 final size:12 Alignment explanation
Indices: 8386460--8386486 Score: 33 Period size: 12 Copynumber: 2.2 Consensus size: 12 8386450 CAGAAACCAG * * 8386460 AAAGTGTCACTA 1 AAAGAGTCACAA * 8386472 AAAGAGTTACAA 1 AAAGAGTCACAA 8386484 AAA 1 AAA 8386487 TTTCGTCTAT Statistics Matches: 12, Mismatches: 3, Indels: 0 0.80 0.20 0.00 Matches are distributed among these distances: 12 12 1.00 ACGTcount: A:0.56, C:0.11, G:0.15, T:0.19 Consensus pattern (12 bp): AAAGAGTCACAA Left flanking sequence: Indices 8385960 -- 8386459 GATTCCAATGGAAATTGTGATTGTGTCAATGCATTCCATTCTCACGGATACAAACTTTTCGTCAA AGTACTTCTGACATTCTGCCATCAAACAAAATGTACAAAAACATCAGACAATTGTTATGGTCTTC CATGCCGAGTCGGAAAATGCAAATGTTTTGTTGGTTCTGGAGTTGGCTCAAAACTACCTGTGCAT TATTTCAAGCCAGCTGGAAAATAATTATCATTCAATGTAGATAGTCAATAGAAACTTTCACGTAA TCATCATTCTTTTCGGGTTGAATAAAATGATAAATGAATGGTGACTTTCAGTTACGAGAATATAA TAATTTCTGGCACTTGAATATCAAATCACCTGATAAACGACATGATAAAGTATAAAACATTTCAA AGTATTTCCTGAATACTATTCCTTGTTTTAATCGGATTTTTGACTTTCCACCCACTCTTCAACCT CTCGATAAGTGCAAAGCAAACAACCAAATCAGTTTCAGAAACCAG Right flanking sequence: Indices 8386487 -- 8386986 TTTCGTCTATAAAAGGAAATTGATATGGCTCATTATCAGTAGTAACCATGTGCTCTCGTGTTTTG TTTGTCTTGCTCTCGACTTTTACAGTTTTGGCTGGAGCCAGTGTTACCTGTGATTTGACACAAAA ACCTTCTACATGGGCACAAGTACATGCTAAGAATATCTTCTTCAATGCTTATGAGCCAGATAATT ATTTCAGTTTGAATGGATTCTGTGTCAATGTGGGTTCAAAATTAGAAAACACTAGTGTTTGATAT AAATTGTTATAGAACGACTTTATGTCACATACTCTCACTTATTCTTCCCATGTGAAGCTTGCTGA TTCTTCTGTAAAAGTCAAGACCGACGTTGCACTTAATACCAACTTTGGTGAGTTATCTAAAAAAA AACGTCATTGATAGAGAAAGCTCATCAATTATAAATTAATCTGCTAACAGGAAAGAATGAATCTT ATCATGTTTAATGTGTTGCATCAGTATTCTAAACTAATTTTAAAA Found at i:8409567 original size:12 final size:11 Alignment explanation
Indices: 8409539--8409566 Score: 35 Period size: 11 Copynumber: 2.5 Consensus size: 11 8409529 TATTCAAATC * 8409539 AAAAAGGAACA 1 AAAAAAGAACA * 8409550 AAAAAAGAAGA 1 AAAAAAGAACA * 8409561 AACAAA 1 AAAAAA 8409567 ATGATAAACA Statistics Matches: 14, Mismatches: 3, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 11 14 1.00 ACGTcount: A:0.79, C:0.07, G:0.14, T:0.00 Consensus pattern (11 bp): AAAAAAGAACA Left flanking sequence: Indices 8409039 -- 8409538 AATTCTGAAGAGGTTTGAGGACGATAAGAAGAGATGATAGGGAGATTTTTAGAGTGATAAATAGA ATTTATTTGAATATTGTGCTGGTATGTGCTCGTCATCTGGTTTGATGTAGTCAAATTACCGTATG ACGTCACTCCTTTATTTGATGGTCCGTCTCGTCAACCATACGCTAGGCATGCGTAGCATTCAAGT GACTTCACTATTTAGTAATTTTTTAAGAGAAATGGTACAATTGTGAAATATAATCTAATGAACCG AGAAAAAATTTTGGAAAGAATTTTAATTGCGCTAAACAATTTTGGATACTTTTCCAGCCACTTTA AACCATGCCAAATTATCTGTACAGTAATTAATACAACTAACAAATTCATTTTCAATTGGTAGAAT GAAAAAAAAACTCGTACAAACGTACATTTAGGTATGTCGACCTCATAATTATTTTATTTTTTTAA AAAACATGTTACTAGCCATTTAACATCAACCACTCTATTCAAATC Right flanking sequence: Indices 8409567 -- 8410066 ATGATAAACACTCATACAAGGATTGGTTCCAATGTAGTCATATGTCTGGCAAATGAATGAAAAAG TTACACAGTTTTACAGTGTAAACACTGCCTCGCTCATGCAAAAACGGTTTTTGTGTAGGAGGAAG AAGAAGAAGAAGAGAAGGAGGGAAATGAAAACATGAAGGGACGAAATAAGTAAAAGAACTTAGAA TGGTAAAAAGAGAGAAGGACAAGGCGTGATTCGTATCACAACCCAACCCGAAATGGCATGGATGG ACGTAGGTTGTCATATGGAGGAAAGAGGAAGACTGGGAGGTTGGATAAAAAAGGAGATGAACGGT AAATGGATGACTAGGATGTACAGAAGGTGAGTTGAAGATAGTGCATGGGATTGAGACACGCAGGC TTCGGAGGGCGATTGGCAAACTGTGCCCATTGCTAGATTGGGTAATATTATAAATAGAAGGGATG AAGAATTGAATAGAAAATATAAACAACTGATGGGAGTTTATGACT Found at i:8411073 original size:12 final size:12 Alignment explanation
Indices: 8411053--8411076 Score: 41 Period size: 12 Copynumber: 2.0 Consensus size: 12 8411043 ATAAATCAAA * 8411053 CCGATTCGTTTT 1 CCGAGTCGTTTT 8411065 CCGAGTCGTTTT 1 CCGAGTCGTTTT 8411077 TGGTTTCATA Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 12 11 1.00 ACGTcount: A:0.08, C:0.25, G:0.21, T:0.46 Consensus pattern (12 bp): CCGAGTCGTTTT Left flanking sequence: Indices 8410553 -- 8411052 ACGCGTCTCAAAATAAATTTGAAAAAATCAAAAGAAATGGCGATGGCGAGACAGTGTTTTTTGAA GACATTTTTCTCCTACATATCTGCAGGGGTAAAAAATGAACTTTTCAAATTGGGCACAATTTTGG TGCCTGTGAAAGTTTAAAAATAGACACGAAACATTGATATCTACCAAATTTGGGTGAGTTAACGA AAGTGTCAACATATTGAGCTATTAACATTTTAACGAGGTTTTAGTAAATATCATTACGGTAAAAA ATGAAAAAAACTATTTTGGATATATTCAGTACTTTCAGGAAACCCCCTTGCTGATGTCATATGAA AATAAACGTTTTTTTTTCAGAATTCAACACGCTATTTTTACACGCGCCGTCCACATTAAACTTGA TCAAAACTCAAGAAAAAGTGGGACTTTCGGATGGAAAAAAGGAGCCATTTGTAGTCACGCATCAC ATTTCATCGCACATAATTTGTCTTAAAGTATGCTCATAAATCAAA Right flanking sequence: Indices 8411077 -- 8411576 TGGTTTCATAGATTAGAGGACATTGGAATTGGAGGGAGGAGATTAGAAAATGGATTGATGCAGTG AACTGATAGAGATTGGAAAATTGAATGAGATGATTTGGCTTTGATTTGATTTGATTTGACTAGGA AATTAGAATTAGAATAAGATAAAGTTAAAGGAATTGGGGAAAGAAGTGTAATTTATTTGCTTTTT TCTCATCATAGATAGTAAACAGGAAAATGTTTTTTTAACGTTACCGTATTTTTATCAACTCAACA AAGTTTTCCAATAACTTTCAAACTTCAAAAAAAAACGGTTTTAATTGAAATTCGAAGTTAGAATA CACAAATTCATGTAAAATCAAATACAAAATCAAACAGTTCTGGACAATTTCCTAAAGTTGAAAAG CTTTGAAGTATAGATCATAATTTTCGGAAAATGTTCCAGAGTGATATATTTTTTAAATAAATTAT AGGACATAATTTCAGTCTAAAAATGAGCTTTTACAGTATAATTTA Found at i:8411926 original size:11 final size:11 Alignment explanation
Indices: 8411906--8411927 Score: 37 Period size: 11 Copynumber: 2.0 Consensus size: 11 8411896 GGTTTCATTC * 8411906 AAATTGACATA 1 AAAGTGACATA 8411917 AAAGTGACATA 1 AAAGTGACATA 8411928 TTAAATAAGT Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 11 10 1.00 ACGTcount: A:0.55, C:0.09, G:0.14, T:0.23 Consensus pattern (11 bp): AAAGTGACATA Left flanking sequence: Indices 8411406 -- 8411905 AATTCATGTAAAATCAAATACAAAATCAAACAGTTCTGGACAATTTCCTAAAGTTGAAAAGCTTT GAAGTATAGATCATAATTTTCGGAAAATGTTCCAGAGTGATATATTTTTTAAATAAATTATAGGA CATAATTTCAGTCTAAAAATGAGCTTTTACAGTATAATTTACGAACTCTAAAACGGAATAATGAA ACTTCTCAAATTATAGATCTAGAACTCTCGAATGAGTAAAAATGAGTACAACGTATACTAGAATT GAGATTAAATGGATTTGAATTAATTAATATTCTCAAAATTAGACAATAGAATGCACAAAAAAGTG AAATTGAGAAAAAATCTTCAATGGATGGATTCAATAGAATAGATAAGTATCTAGAGTAATATTAA GGAAAACAACGTTTGAAAATACTGGAAATAATGGATTGCACTAGCAGAACTCTCTGTGAAATCTT ACGGAGACACGTCAGACTTGTACGTTGTTTTCATTGGTTTCATTC Right flanking sequence: Indices 8411928 -- 8412427 TTAAATAAGTATAGTAAGAAATTAAAATAAGTGAGAAAGAGAGAAAGTAGTGATTTTGATTAGAG GGCCAAGAGAAAAAGTGGCTCTCTCGTGGTCATGAAATTGGATTTATAATATTATATACATGATT TTTAGTTTTTTTAGTTCTAGATTTAGCCTCCCCGCTTATTTCTCCACACCGGCCATTGATAAACA AGTATAACGTTATTTTTGGTAGTTGTACAAAGATGTGGACCCCTTTTTCTCAACAAACATAAACA AATATTGATCAAATCGAATCAATATATAATCAGTGAGAAGAAGAGCGACCGATAGATGTCGAAAA ATGCAATGACCCAAATAAACATAGTCTGTAGAAAAGTCGGAAGAAAAAAGAGAAAAAGGAATCGA AAGTCGGATCGGGAAAATGAAAAAAGAGATATCTGGGCTTGGAAGAAAGAATATGAAGAAGAAGA AGACGGACTGTGTGTGATCAGATAGGAGGACGAGTGGATAAAAAG Found at i:8413260 original size:11 final size:12 Alignment explanation
Indices: 8413236--8413264 Score: 44 Period size: 11 Copynumber: 2.5 Consensus size: 12 8413226 CCAACCACCC * 8413236 TTTTTTGTTCAA 1 TTTTTTGATCAA 8413248 TTTTTTGAT-AA 1 TTTTTTGATCAA 8413259 TTTTTT 1 TTTTTT 8413265 ACAAAATGCC Statistics Matches: 16, Mismatches: 1, Indels: 1 0.89 0.06 0.06 Matches are distributed among these distances: 11 8 0.50 12 8 0.50 ACGTcount: A:0.17, C:0.03, G:0.07, T:0.72 Consensus pattern (12 bp): TTTTTTGATCAA Left flanking sequence: Indices 8412736 -- 8413235 ATAGTCTAAAATTACCAAATAACAAAAGATTTTAGATTCTGCAAAAATTTCAGTCAATTGAAAAT TGTCGTACTTTCAACAAAAAAATAAAAAAAAAACATATTATTGGTTTATCTAGTGTTCATTCTAT AGCCCGCATATCTACACAAACGTTTTGTAAAATTTAATTTTGCTGTGTACAAAGTGTCCCACAAT ATGCTCATCATAGCGTTTTGTACTTAAAATAACTTTTCGAAAAAATTCAGAAGTCATGATTTTTA GTTCTCTATTTGAGCAAGGGGTTGCATATTTTAAAAATATAAAATTTATTTTCTGCAGGTTTTCG ACTATTTAAATTTGAAATTCCGGAATAATCATTATGTACATTGTACGTCTGCCTGTGTCGTACAT CTCTACCATCCTAAACTATGATCTCCTGAATTGAATTGTCCAATGGATTACAATAGATTATAGAC GCATCGAAACTCAACATATCGTCCATTAGTTCTATCCAACCACCC Right flanking sequence: Indices 8413265 -- 8413764 ACAAAATGCCAACTTCACTCGCGTTTTTAATTGTACTTCTTGTTTCAACTGTAAATTCTTTGGAT CTGAATGATATTAGTGAGTTAAAATTTCGTTTTGATCAATTTCAAAAAAAAAACAGTCTGAAAAG TATTCTTCTGCTTTCGAATTTGAATTCGAAGTTTTTAAAAGATGCAGTGGGTTTGTTGAACATTA TCCCAAATTTCGCATCCAACAAAAAGCGATTAAACAACTTATATCTCGGTTCTCTATGGTTTTAT CAAAAATATTGTCAACTGATGAATACGTGGAAAATGTTTCTCTATATGTTGGCTGTATAACTTTT TTGATAAAACTGTATATAACCGAGATATAAGTTGCCAAATTAGACGAAAGGAAAAAGCGAGAACA AAGGAACCTAGCAGTAGACTTCTACCTCTAGATTTTGACAGTCTTAAAAAGTTTTAACATACTCA GAAAAAATAAAGACGAATCCCACTACGATTTCTACAACTACACTT Found at i:8416244 original size:16 final size:16 Alignment explanation
Indices: 8416212--8416244 Score: 52 Period size: 16 Copynumber: 2.1 Consensus size: 16 8416202 ACCGGTTAGG * 8416212 AAATTTTCAATCAAAA 1 AAATTTTCAATAAAAA * 8416228 AAATTTTCAATAGAAA 1 AAATTTTCAATAAAAA 8416244 A 1 A 8416245 GATAGAGAAT Statistics Matches: 15, Mismatches: 2, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 16 15 1.00 ACGTcount: A:0.58, C:0.09, G:0.03, T:0.30 Consensus pattern (16 bp): AAATTTTCAATAAAAA Left flanking sequence: Indices 8415712 -- 8416211 CTGACGTAATCATCTTTCGAAATCTGAAAAAAAGAAACTAATAATTTCGAAATAGGCTTATGAAA TATGATTTCACCTGAGACATCAGATGAACAAAAGCGTACACAGCCTTTTCCTTGAAAACCGAGAG TACTGTGCTCCGTTCTGCCTCGTTTTCTGCTTGTTGATAAGTCACGATAAAGTCGTAATCACTTT GAGCAATCATTCTTGTTCTGAAAAATTACTACGTAATATGGAAGATAGATAGTAAATATACCTCG TGAAAAGTCCCCAATTGGTTTTCATTGCTCGAACTTTGTCGGCTTCTTTTTGAAAATGAGTGCGA ATGAGATCCTGATTCTCCCCAAATACCATTTTGAAACTGAATCAAAGAAAATTAACTTTTAAAAT GAGGACAAACACAGAACGTGGAAAATGTAGAAATGGAAAATCACGGTGGTACAGCAGCTAGATGA GTGCAAATGCGCTCTACCGAACAAACCCAAATTTGACCGGTTAGG Right flanking sequence: Indices 8416245 -- 8416744 GATAGAGAATTTTCTTGCGGCCATTTTTCATATGCATCGCAAATTCAAATTTGGGGTTAGTTTTC GAGATAGCAGCCAATATAGGTTTTCAGACTGAGTATCATAAACCAAGCCATCTAGTTTCTGTGCT ACCATGAAATCCAACACGGCGATGCGAACACGCTCTATTGCGAAAATTCAAGTTTTTTTTTTCAA AATTTCTCAAAATTTGATCATGATTTCGAGCGGTATTTTTTAATTTTTACTTTTTAGTTTCCGCG AATTTTTGATAAGTAAATTTTTTCGCTCACTCTTTGTTCATTTCATTCAGATGTTCCATTTCAAG GATTTTTTTCCTTTTTATTTTCTTTTCTGCCGGTGCTCCCAAGTTTTCTTGATTTATATTCTCTT CTTTTTCCATCATCATCACAGTTTGTAAATTTATTTTTCTAGATTCAAAATGGCTGACAACGATT TCCTGAGCGGTGAAGCAATCATGGTGTTCAAAAAGGAAATCCTTG Found at i:8421861 original size:14 final size:14 Alignment explanation
Indices: 8421832--8421862 Score: 39 Period size: 14 Copynumber: 2.2 Consensus size: 14 8421822 CTTTTTGAGT * 8421832 TACTGGTACATTTA 1 TACTGGTACATCTA 8421846 TACTGG-ACATACTA 1 TACTGGTACAT-CTA 8421860 TAC 1 TAC 8421863 AGAACAGCAC Statistics Matches: 15, Mismatches: 1, Indels: 2 0.83 0.06 0.11 Matches are distributed among these distances: 13 4 0.27 14 11 0.73 ACGTcount: A:0.32, C:0.19, G:0.13, T:0.35 Consensus pattern (14 bp): TACTGGTACATCTA Left flanking sequence: Indices 8421332 -- 8421831 TGAGGGGGTGGAGAGTTTGCTAATTGAGATCAGTTTTCTTTAGAGATGAAGCTCAGTCAGATCTT CAAAAAGTGGCTAAATTTGTCTGAAATCCGAGTACTGCAACAAGTGGGCGGAGTCCCGAGGGATA ACCGACTCGGTCTGACGTTGCAAGTTTGATTGGTTTGATTAGCCGAATCAAAACTATCATTCCCC GAGGGCTCAGACGAGGAAATGAGTACAAAAAAATGACCGACAAAAAAAGTGCATTAGTCTCTGCT CAGGCAGAAAAATGCAAAGAAATGATGTGCGGGTGGGGGAGGACAGGACGGGTGCCAAAAACTTA TTTCACTACTACATGTTTCTTTTCTGGAGTTTTTTCTCCTGGTTAACTGAACAAAAAACACTCGA CTCCAAGAAGAATAAGAAGAAGAGACATCTTCTTCCCGTTTTTTTCTACTTCAATGTTGGTCTTC AAAGGCGACGAGCAATGAAGAGCACGCTCCGCCCACTTTTTGAGT Right flanking sequence: Indices 8421863 -- 8422362 AGAACAGCACAAGATTCATGAAAAAAGTACAGAATGCTGAACGAACTTGAGGTTTACAAAATTCT CCTAGTTTTCCAGACAACATAGGAATAATTACTCTTCCGGTGGAGACATACTGCCCTTTTTCGCC ATTGTTTACGAGCGTTTTGTGGGAAAGACTTGGTAAATGGAGAACGCGGAATTCTCCGAATAGTT AGGAGAGATTGAAATGTCCGGGACTGCGCTCAAGGAGAGCTATACTAAAAAAAGAAGAAGTTTGG CAGAGGAAAGGTCAGTCGGAGAAGAGATGTGAATGGGAAATAATGAACAATAGAACAAGTCTGCG GAAGTAACTAGCATCTTCTAGTACTTGATTCCACCTTCTGACACCATCTTGATTGTAGTTTTTGG TATGAAAATAGGCATCCTCGTGGATACAAAATGCAATTTCCGAAAAGAGCTAGAAATAAATAACA TTCTGATCGAGTTTGAGGATTCTCTAGTCTCAATATGGAAAAGGG Found at i:8427509 original size:12 final size:12 Alignment explanation
Indices: 8427492--8427520 Score: 42 Period size: 12 Copynumber: 2.4 Consensus size: 12 8427482 TATATTTAAT 8427492 AAAAATTATG-CA 1 AAAAATT-TGACA 8427504 AAAAATTTGACA 1 AAAAATTTGACA 8427516 AAAAA 1 AAAAA 8427521 CCGTTCAGAA Statistics Matches: 16, Mismatches: 0, Indels: 2 0.89 0.00 0.11 Matches are distributed among these distances: 11 2 0.12 12 14 0.88 ACGTcount: A:0.66, C:0.07, G:0.07, T:0.21 Consensus pattern (12 bp): AAAAATTTGACA Left flanking sequence: Indices 8426992 -- 8427491 TTTGCGGTTTTAACAAGGAATACTGTGCACAACTTTAAACCAAAATAACCCTGTGGTCAGATAAA GTCAGCGATAACAAAGGGTATTGTTTCTATTGGCGAAAACTTTCGCTTTTCGTATTTCGAATCGA AAATATTGAAATTAGTGTGTCAAAATTGAAAATGCGAGAATGAATGATAAGATTCTCACTGGGAA TTGAATAATCAATAGAGAATAATATATTTCAAAACGCATAATAAAGGTCAGAAGAGTGCACCGCT CGCGGCACGAATAGAGAATACGAAACCGAGAGAGTGCTAGAGAAAACGATAGCGGACGGACGACA AGGGGTCGGCAACCGCCGCAGCTGAGTGAACGGACAAGGAACGGAAGGATTGGTGCCATCTATTA GAATCTAAAAGTCATTTGCTAAAGATACATAAATTTAGTTACGCGCAAGTGTGAAAATAGTAAAA TTGTTGAGGAAATTTATCAGCGCAAGTTAAGGATATATATTTAAT Right flanking sequence: Indices 8427521 -- 8428020 CCGTTCAGAAATCCCGACAATTGAAAAGGAATCTCGAAAATCACAGAAAAAAGCAACAAAAAATG ATTTGAAATTCTACCGTACTCGCATTGGTCTCGCCACGAAGACGAAAAATAGGTAATGCGCCTTT AAACTAGGGTACTGTAGTTTTAGAATTTTATTTTTATTTCTGTTGTGTTTCACTATTTTTCGATC TTTCAAAATGAAATCGAGCTGAAAAATTGCAAAATTAAAAAACAATTGCGAAAAACGGAAAATTT TGAAACGCGTGGAATGAAAAATTGGCGAGACAGTTCCGATTGAATTTCATAAACCTATTAAAAGC GCCCGACATTAATAATCAGAGGCGTTATCAGAGAAACTTCATAAACTATCAATTTTCATGTGATC ACATCGAAAAGAGAACACATGAGCACAAAACAAGAAGCTGACACCAAACAGATGAGATGGTCTTG TGAGAAGAATGATTGATACATACTCATGAATACCAAAAAAAGAAA Found at i:8427518 original size:11 final size:12 Alignment explanation
Indices: 8427492--8427519 Score: 35 Period size: 11 Copynumber: 2.4 Consensus size: 12 8427482 TATATTTAAT * 8427492 AAAAATTATGCA 1 AAAAATTATGAA * 8427504 AAAAATT-TGAC 1 AAAAATTATGAA 8427515 AAAAA 1 AAAAA 8427520 ACCGTTCAGA Statistics Matches: 14, Mismatches: 2, Indels: 1 0.82 0.12 0.06 Matches are distributed among these distances: 11 7 0.50 12 7 0.50 ACGTcount: A:0.64, C:0.07, G:0.07, T:0.21 Consensus pattern (12 bp): AAAAATTATGAA Left flanking sequence: Indices 8426992 -- 8427491 TTTGCGGTTTTAACAAGGAATACTGTGCACAACTTTAAACCAAAATAACCCTGTGGTCAGATAAA GTCAGCGATAACAAAGGGTATTGTTTCTATTGGCGAAAACTTTCGCTTTTCGTATTTCGAATCGA AAATATTGAAATTAGTGTGTCAAAATTGAAAATGCGAGAATGAATGATAAGATTCTCACTGGGAA TTGAATAATCAATAGAGAATAATATATTTCAAAACGCATAATAAAGGTCAGAAGAGTGCACCGCT CGCGGCACGAATAGAGAATACGAAACCGAGAGAGTGCTAGAGAAAACGATAGCGGACGGACGACA AGGGGTCGGCAACCGCCGCAGCTGAGTGAACGGACAAGGAACGGAAGGATTGGTGCCATCTATTA GAATCTAAAAGTCATTTGCTAAAGATACATAAATTTAGTTACGCGCAAGTGTGAAAATAGTAAAA TTGTTGAGGAAATTTATCAGCGCAAGTTAAGGATATATATTTAAT Right flanking sequence: Indices 8427520 -- 8428019 ACCGTTCAGAAATCCCGACAATTGAAAAGGAATCTCGAAAATCACAGAAAAAAGCAACAAAAAAT GATTTGAAATTCTACCGTACTCGCATTGGTCTCGCCACGAAGACGAAAAATAGGTAATGCGCCTT TAAACTAGGGTACTGTAGTTTTAGAATTTTATTTTTATTTCTGTTGTGTTTCACTATTTTTCGAT CTTTCAAAATGAAATCGAGCTGAAAAATTGCAAAATTAAAAAACAATTGCGAAAAACGGAAAATT TTGAAACGCGTGGAATGAAAAATTGGCGAGACAGTTCCGATTGAATTTCATAAACCTATTAAAAG CGCCCGACATTAATAATCAGAGGCGTTATCAGAGAAACTTCATAAACTATCAATTTTCATGTGAT CACATCGAAAAGAGAACACATGAGCACAAAACAAGAAGCTGACACCAAACAGATGAGATGGTCTT GTGAGAAGAATGATTGATACATACTCATGAATACCAAAAAAAGAA Found at i:8428972 original size:11 final size:11 Alignment explanation
Indices: 8428949--8428972 Score: 34 Period size: 11 Copynumber: 2.2 Consensus size: 11 8428939 GAAGGAAAAT * 8428949 AAAAAGTGCAA 1 AAAAACTGCAA * 8428960 AAAAACTGGAA 1 AAAAACTGCAA 8428971 AA 1 AA 8428973 GTGTTTTCGA Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 11 11 1.00 ACGTcount: A:0.67, C:0.08, G:0.17, T:0.08 Consensus pattern (11 bp): AAAAACTGCAA Left flanking sequence: Indices 8428449 -- 8428948 TCAAATCATCATACGGTCAGATGTGTAGAGCCCACTAAAAATAAATATTACTTTTTAAAAAACTG CATGGCCATTCTGTAATGGATCTATTCAGATTAGAGATTATGCGCGGGGAGTAGGAGGAGGACGC ACCGAAAATCACAGATGATCGTTACCAATATTGAAACGAGTTCAAACACTTCAAATACTGAAAAA GTTTGGTCTGGTCGTGTGAAACTCATATTTTGAAACGGATTTTCAACTCAATTGTTTACTAATAA AATTTGCATCATTCGTGTAACAATTCCACGTGTGGGAATTGTTATTGTTGAATTTTTCTTGGAAA ACGAGTTGGCAGGTCAACTGATGAAATGTGAAGATCAAGTGATTAAGTACCGTATCTAAGGTTTC ATTAATGAAGATACTGTTTTTTTTTTGAAAGTCTGATGATAAAAATTATAACATTTTTCACACGA ATTTGAACTAAGAATCATAAAATTGGAGATTTGCAGAAGGAAAAT Right flanking sequence: Indices 8428973 -- 8429472 GTGTTTTCGATTCTTTAAATACACTAATTAGAAGCTTCTCGAAAATTCTGCACGATTCCAGTAGA AGAGTGCAAGAGGAAGGTACACATACAACCTAGATAAGAGACGCAGAAAGTGAGAGACGTCTTTC CTACGGTCCAAAATGTCCTAAATATGCACCGACTTTTTATTTAAATAAAATTTAAATCAGACTGA AAATCAGAAAAAAAAATCGTGTATTACAGATTTTTAAAGAGGGAATAGTTACTCAACCTAATAAT GCAAGAATCTCATATGAGGTCTTCTTAAATAGTACGTGTGATATACAAAATACGATTCTTCAAAG TCAGATGGGCGGGAATGGTGGCAGCAGCTAGAAAAAGTGTCAAGAAATCGATCAAGAAACTAGAA AAAAATGGCGGTCAGTTAAAACTTACAATAACTTTTTGTTCTTGCCATGTCAATTTTGTAACAAA ACATAATGTAATTGTCGGACAATGGTGGACAACGATCGGTGATTA Found at i:8429182 original size:12 final size:12 Alignment explanation
Indices: 8429156--8429182 Score: 33 Period size: 12 Copynumber: 2.2 Consensus size: 12 8429146 AATAAAATTT *** 8429156 AAATCAGACTGA 1 AAATCAGAAAAA 8429168 AAATCAGAAAAA 1 AAATCAGAAAAA 8429180 AAA 1 AAA 8429183 ATCGTGTATT Statistics Matches: 12, Mismatches: 3, Indels: 0 0.80 0.20 0.00 Matches are distributed among these distances: 12 12 1.00 ACGTcount: A:0.67, C:0.11, G:0.11, T:0.11 Consensus pattern (12 bp): AAATCAGAAAAA Left flanking sequence: Indices 8428656 -- 8429155 CGTGTGAAACTCATATTTTGAAACGGATTTTCAACTCAATTGTTTACTAATAAAATTTGCATCAT TCGTGTAACAATTCCACGTGTGGGAATTGTTATTGTTGAATTTTTCTTGGAAAACGAGTTGGCAG GTCAACTGATGAAATGTGAAGATCAAGTGATTAAGTACCGTATCTAAGGTTTCATTAATGAAGAT ACTGTTTTTTTTTTGAAAGTCTGATGATAAAAATTATAACATTTTTCACACGAATTTGAACTAAG AATCATAAAATTGGAGATTTGCAGAAGGAAAATAAAAAGTGCAAAAAAACTGGAAAAGTGTTTTC GATTCTTTAAATACACTAATTAGAAGCTTCTCGAAAATTCTGCACGATTCCAGTAGAAGAGTGCA AGAGGAAGGTACACATACAACCTAGATAAGAGACGCAGAAAGTGAGAGACGTCTTTCCTACGGTC CAAAATGTCCTAAATATGCACCGACTTTTTATTTAAATAAAATTT Right flanking sequence: Indices 8429183 -- 8429682 ATCGTGTATTACAGATTTTTAAAGAGGGAATAGTTACTCAACCTAATAATGCAAGAATCTCATAT GAGGTCTTCTTAAATAGTACGTGTGATATACAAAATACGATTCTTCAAAGTCAGATGGGCGGGAA TGGTGGCAGCAGCTAGAAAAAGTGTCAAGAAATCGATCAAGAAACTAGAAAAAAATGGCGGTCAG TTAAAACTTACAATAACTTTTTGTTCTTGCCATGTCAATTTTGTAACAAAACATAATGTAATTGT CGGACAATGGTGGACAACGATCGGTGATTATCAGAAACGAGAGAGAGGGAAGAGTTTCTTTGAAA GTCACGAGACAATCAGAGACACTTTTCGGCCGTTTCGGGTTCTTTTTGAACCTGCTGATGGTGAT GATGATAGAGTTGAAAAAGTTGATATGAAAAGGTGAGAAGATGAAGATGAAGAAGACATCCGTAT GATAAAAGATACAATTCTTGAAGACGTCAGCGAAGTGACTAGATT Found at i:8432175 original size:19 final size:20 Alignment explanation
Indices: 8432140--8432185 Score: 64 Period size: 19 Copynumber: 2.4 Consensus size: 20 8432130 ATTATTTAAT 8432140 AGTTTCTCAAAAGTTTTCGA 1 AGTTTCTCAAAAGTTTTCGA * * 8432160 AGTTTCT-AAAATTTTTTGA 1 AGTTTCTCAAAAGTTTTCGA * 8432179 GGTTTCT 1 AGTTTCT 8432186 TTTTTTTTAG Statistics Matches: 23, Mismatches: 3, Indels: 1 0.85 0.11 0.04 Matches are distributed among these distances: 19 16 0.70 20 7 0.30 ACGTcount: A:0.26, C:0.11, G:0.15, T:0.48 Consensus pattern (20 bp): AGTTTCTCAAAAGTTTTCGA Left flanking sequence: Indices 8431640 -- 8432139 AAACTCGCTCACTCGACCCAGTTTTCTTAAGTTTTGTGAAATATGAGGACAAAAAATGCCCATTT TCTTTTTTCGTTTCTATCTTTTTCTCGCCAAAAAAGTTGAGCTTTTAACGGGAAAAAACGTCCAA ATACTAATCCATAACTCACTCTTCTTTTTCTTATTTCTTGTCAGTCTGACAGCCATGTAGAATGG AAGAATTGGTGACTGAGAAGCTGTCGAATCGTTGCTCTGAATCCTATTCCGTTCCATTATTTCGT CAACAGCCGCAAATAGATCCGGTGCTTCGTCACTTGATGTGGCACATGCAAATCTGAAACTTTGC CAGAGGGATTATTAATTTTTTGAAAATTTTTTTAATTCTTTCAATTACTGGAATAAATTAAAAGT GTCCTCAAAATACCGAAAGTCGCACCCAGGTTTTTATAAAATAATTTTCATTAATTTTTTTTCTA GAAAAATTTCACAGGAGTTTCTTGAACTTTCCAAAATTATTTAAT Right flanking sequence: Indices 8432186 -- 8432685 TTTTTTTTAGAATGCGACATTTTTAACATTTCTCGAAATATGTGAAACGGATTAAATTTTTTTTT GAGAAATTCGGTATTTTGGAAATTTTTAAAATTAAATGAGCAGTGAACTGCTCCATTACAGAATA TTTTGGCTAAATATTTTCGAGAAAAATTTTTTCGGATAAAATTATAAATGTTTTTTTTTTTCAAT AATCCAGAAAAACTCACACGCCCGCATGATTTTCTTTTGCAGAATTTTCTCGTGCTTCAGCAGTT TGCCTTCTCAAATCTTGAAGTTTTGCCAGAGACTGCTCACGTTTCATTGCCAATGGACTTTTTGC TGGTTGCTGTAAATATAAAAAATTAATTTTGAAGAATTAAAAAAAAAAAAAATTTTCAATAATTT TTAAAAAATGTCAATCTGACATGAAAATTACCTCATTATTATTATTATTATTCGAAGCATCATTT TCTTCAGAAATTTTCTCAGTCAACGCAATCAAATCATAGCTATCA Found at i:8432347 original size:15 final size:15 Alignment explanation
Indices: 8432324--8432358 Score: 47 Period size: 15 Copynumber: 2.3 Consensus size: 15 8432314 TATTTTGGCT * 8432324 AAATATTTTCGAGA-A 1 AAATTTTTTCG-GATA 8432339 AAATTTTTTCGGATA 1 AAATTTTTTCGGATA 8432354 AAATT 1 AAATT 8432359 ATAAATGTTT Statistics Matches: 18, Mismatches: 1, Indels: 2 0.86 0.05 0.10 Matches are distributed among these distances: 14 2 0.11 15 16 0.89 ACGTcount: A:0.43, C:0.06, G:0.11, T:0.40 Consensus pattern (15 bp): AAATTTTTTCGGATA Left flanking sequence: Indices 8431824 -- 8432323 ATGTAGAATGGAAGAATTGGTGACTGAGAAGCTGTCGAATCGTTGCTCTGAATCCTATTCCGTTC CATTATTTCGTCAACAGCCGCAAATAGATCCGGTGCTTCGTCACTTGATGTGGCACATGCAAATC TGAAACTTTGCCAGAGGGATTATTAATTTTTTGAAAATTTTTTTAATTCTTTCAATTACTGGAAT AAATTAAAAGTGTCCTCAAAATACCGAAAGTCGCACCCAGGTTTTTATAAAATAATTTTCATTAA TTTTTTTTCTAGAAAAATTTCACAGGAGTTTCTTGAACTTTCCAAAATTATTTAATAGTTTCTCA AAAGTTTTCGAAGTTTCTAAAATTTTTTGAGGTTTCTTTTTTTTTAGAATGCGACATTTTTAACA TTTCTCGAAATATGTGAAACGGATTAAATTTTTTTTTGAGAAATTCGGTATTTTGGAAATTTTTA AAATTAAATGAGCAGTGAACTGCTCCATTACAGAATATTTTGGCT Right flanking sequence: Indices 8432359 -- 8432858 ATAAATGTTTTTTTTTTTCAATAATCCAGAAAAACTCACACGCCCGCATGATTTTCTTTTGCAGA ATTTTCTCGTGCTTCAGCAGTTTGCCTTCTCAAATCTTGAAGTTTTGCCAGAGACTGCTCACGTT TCATTGCCAATGGACTTTTTGCTGGTTGCTGTAAATATAAAAAATTAATTTTGAAGAATTAAAAA AAAAAAAAATTTTCAATAATTTTTAAAAAATGTCAATCTGACATGAAAATTACCTCATTATTATT ATTATTATTCGAAGCATCATTTTCTTCAGAAATTTTCTCAGTCAACGCAATCAAATCATAGCTAT CAGATCGTTTTCTAAAGGGTTTTCGTAGCAATCCATTCATATTGAAAATTGAAATTCAAAATGAT ATGGAGACCGGTGTTAAATGAGAATAGTTCCGCGCGTCAGGCTGCCGTCGGAAAATAAAATAAAA TAGGCGCTAATACACAAAAAAGTATTCAAAAAGCGGAGGATTCAC Found at i:8434843 original size:16 final size:16 Alignment explanation
Indices: 8434812--8434843 Score: 43 Period size: 16 Copynumber: 2.0 Consensus size: 16 8434802 TGAGATAAAG ** * 8434812 ACGAAAAACTACTTTT 1 ACGAAAAAAAAATTTT 8434828 ACGAAAAAAAAATTTT 1 ACGAAAAAAAAATTTT 8434844 TTTTGGCAAA Statistics Matches: 13, Mismatches: 3, Indels: 0 0.81 0.19 0.00 Matches are distributed among these distances: 16 13 1.00 ACGTcount: A:0.53, C:0.12, G:0.06, T:0.28 Consensus pattern (16 bp): ACGAAAAAAAAATTTT Left flanking sequence: Indices 8434312 -- 8434811 ATAGAAAAAACAAGTTTTGGCCTGAAAATTAATAAAAATAATATCTCTTTGCAGAGTATTTCTAA TGCGACGAAACTTCATCTTCCATTAAATAAAATCAAAAACTATGAATCAAAAATACATTCCGCAA AACTTTAGTGGAAAAAATGTTCAGGAGACGCAGGAAACCACTCCCCCCAGTACTAAATTTTTGAA TTATTTTTTTCTTGAAAAATTTTCCCACTGAACTTTTTACAAATTTTATATGTCTCGATGCGTCT TGATGAGACCTAACGTCAATTTTTGGAAAACTAAGAAAAATTGAAAACTGACCGAGTTATGTTTG AAAAAGTAGATTCGCGAAATAGGGGAAGTGTGCAAAATTTGGCACTTATTCGTCTTGCTCGGCCG ACTCATAGAACTTTTTCCAATTCTGAGTTAAAAATCGTGTTCAGCGTACTTTTGTACGTGGGGTA AACAAAAAAAATATCAAAAAAGATGAAGTAGAACTTGAGATAAAG Right flanking sequence: Indices 8434844 -- 8435343 TTTTGGCAAAATGGCATTTTTTGGCCTTTTGTTTTATCACAACTTTTTTTGTTTTGCACTTATGA ACTCAAACTTTTTTTCAAAAAATCAGTTTCTCTGAGTAGTATCTTGCACATGAGTTTGAAACAAA ACAGAGCAAAACCCGAATTTTAATTCAATTAAAACATGCTTTTTTGGGGGTAAAAAGAGCAACAA AAATTTTTTTCAGACTGGGGAAAGCCGTCCTGGGCTCAATTTTGCTCCGAACTTAGTGCCGTTTT TTGCTCCACCGTGGGGCAAAATATTTCTAGTAGGATTTCAAATATTAGAACATGAAGTCACACGG CTCTGGAGTTATTAACGAAAACGAAAGGGGACATTTTTTCGCAAGCCAAAAAAACGCGAAAAAGG GGCGGAGTCTGTACACTCGGCATTTATTAGAGGCTGCTTGGCAGAAACGAAAAAAAAATGAAGAA ACTCCAATTAATGTAACCGGAAAACGCAAACATATGTTGCAGAAT Found at i:8439031 original size:11 final size:11 Alignment explanation
Indices: 8439015--8439037 Score: 39 Period size: 11 Copynumber: 2.1 Consensus size: 11 8439005 CGGAAAGAGA 8439015 TTTATGAACTC 1 TTTATGAACTC * 8439026 TTTATGTACTC 1 TTTATGAACTC 8439037 T 1 T 8439038 CATTTGTCAT Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 11 11 1.00 ACGTcount: A:0.22, C:0.17, G:0.09, T:0.52 Consensus pattern (11 bp): TTTATGAACTC Left flanking sequence: Indices 8438515 -- 8439014 GCATGACTGTGTTCCAATGTGTAAATAACTGATGTTCTACTTTTTATTACTTGTTTTGTATCATT CAGCTTCTAGACTCAAACATCAAGAGATCAGAAATTAAACAATTTACCTACTGAAATAATTTGAA AGTTTACAAATTCTAGAAATGGTTTCTTCTAGTTAGCAGAAAATTTCTAGAAAGTTGCACAGAAA ATCCAACAGACCCGTCAAAGCTGACACAGCCAATCAAGATTATCCGTGGCCGGAAAAAATGAAAG AGTGTGAGAGATATAGAGAGATAGGGAAAAGCGCCGAATATGTAACCCAAAACAAGAGACAAAGT GTATCCCGTCCCAGCGTCCAAGTCTGGCCCATTCCAAATAAGAAAAGGTTGAGCAGAAAAGATAC AACTGAAAGTGGAGAGAAGACGACAAAGAATAAGGAAGAATTGAGATGGAAAGTTGTTTGTGTTG AAACCCATATAGAGCAACAAAAAAATAAAGAAAAGCGGAAAGAGA Right flanking sequence: Indices 8439038 -- 8439537 CATTTGTCATTTCTAATTTACGGTCCTGAAGGTTGGATTGAGAGATTTCGGTACATTCGAGTGCA CAGATTAGCATAGTTCAAAAAACATTGCTAGAGTTTTTTACGTGTCTGGAGGATGAGTTTTTTTC TATAAACTTCAAGGGAAGTCCACATATTCTGAATGGTCTTGCCGCCCGTTCTATGTTCTTACTGT AAAGTACTGAAAAAAATTTACTTACTGACTTCTATCAAATTTAAAAAAATATGCATTTCGATGAA TGTTTTTTTAAAGATAATTGTTTTTGATCTGAAAATTGTTTTGAATTGGATAACGGACAATATCA ATTCGCACATGAAGTATCTACAGTAATTTCAAAGGCACGCACTCATAACTCTAAAACACTCTGTG CAAGACCCGTGACGAGACCATTTTTATAATTGCACTTCTTTTAAAAATCACAGAAATTTGAATTT TGACAAATAATTTTCAATATAAAAACTTTTAAAAACTGATCAGAC Found at i:8439756 original size:11 final size:11 Alignment explanation
Indices: 8439734--8439756 Score: 32 Period size: 11 Copynumber: 2.1 Consensus size: 11 8439724 TTTTCGGAGA ** 8439734 AGGAGCGGAAG 1 AGGAGCAAAAG 8439745 AGGAGCAAAAG 1 AGGAGCAAAAG 8439756 A 1 A 8439757 CACGAACAAT Statistics Matches: 10, Mismatches: 2, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 11 10 1.00 ACGTcount: A:0.48, C:0.09, G:0.43, T:0.00 Consensus pattern (11 bp): AGGAGCAAAAG Left flanking sequence: Indices 8439234 -- 8439733 AAGTACTGAAAAAAATTTACTTACTGACTTCTATCAAATTTAAAAAAATATGCATTTCGATGAAT GTTTTTTTAAAGATAATTGTTTTTGATCTGAAAATTGTTTTGAATTGGATAACGGACAATATCAA TTCGCACATGAAGTATCTACAGTAATTTCAAAGGCACGCACTCATAACTCTAAAACACTCTGTGC AAGACCCGTGACGAGACCATTTTTATAATTGCACTTCTTTTAAAAATCACAGAAATTTGAATTTT GACAAATAATTTTCAATATAAAAACTTTTAAAAACTGATCAGACTTCACAGTAAGAATTCATTTT TTACATGAAGCGTTCACTCCAAAATCTCCTTGAGTTCCCATGTTTGGTTGATGTTTACTTTTCAA TAAGGGGGTGCCAAAAAACGAAAAAAAAAGAGAAGCGTCGAGCAAAAAACTTCTTGTAGCAGAGC AGCAGCTCACAGAGCTCTTCTGGGGAGGCGTAGTTTTTTCGGAGA Right flanking sequence: Indices 8439757 -- 8440256 CACGAACAATAGCAGAAAAGAGAAGAGCTCAAGGTCGCCATGTTTGTAGAGAGCCTTTTTTTTAG AAATAGATTAATTTTGGAGAAGCCTCTTGTAGTAACATTTGACCCCTTTCTTTTCTTCTTTTGAA TAGGTTGTCATCTAAGAATGCGTGGGGGATGTGTTACAGAGTCACAGAGTCCCATAGAGCAACAA TGTTACCCCACGAGGGATTTGAAAGAAGCGGCACTTCCATATAGATATCCATCTGACCGACAACG ACTTTTTCTTCTTCGGTTTCTCTTTTTATTTTATTTTATTTCATTTTGCACATCAATCGAGATAA ATCAATTTTCGTCTCAGAAACTACATATTTTTTGGACTTGACACGCGTCCCTTGACACCAATATT TACTGACAAAATGGATGAGAAGAGGAGCAGCAAAAAAACGACAAATTGACTGACGGACTGGCTAA ATATGATCGAAAATGAGAGTGGGATAGATGATAGCAAAGAGTTAT Found at i:8440480 original size:10 final size:11 Alignment explanation
Indices: 8440454--8440480 Score: 40 Period size: 11 Copynumber: 2.5 Consensus size: 11 8440444 TCTGGTTAGA * 8440454 AAAATTTATAT 1 AAAATTTATAC 8440465 AAAATTTA-AC 1 AAAATTTATAC 8440475 AAAATT 1 AAAATT 8440481 GTTGTTACTC Statistics Matches: 15, Mismatches: 1, Indels: 1 0.88 0.06 0.06 Matches are distributed among these distances: 10 7 0.47 11 8 0.53 ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37 Consensus pattern (11 bp): AAAATTTATAC Left flanking sequence: Indices 8439954 -- 8440453 TTACCCCACGAGGGATTTGAAAGAAGCGGCACTTCCATATAGATATCCATCTGACCGACAACGAC TTTTTCTTCTTCGGTTTCTCTTTTTATTTTATTTTATTTCATTTTGCACATCAATCGAGATAAAT CAATTTTCGTCTCAGAAACTACATATTTTTTGGACTTGACACGCGTCCCTTGACACCAATATTTA CTGACAAAATGGATGAGAAGAGGAGCAGCAAAAAAACGACAAATTGACTGACGGACTGGCTAAAT ATGATCGAAAATGAGAGTGGGATAGATGATAGCAAAGAGTTATTTATGAGCTTCAAGAGAGACTT TTGCATATTTCCTTGTGTGGTAATCATTTTTAGATTCTGTATTTAGATTTTAGCTGTTTAGATTT TTTAGTTACTCAAAAACAAATCTAGAAGAAGTTAACCCTAAATGCCTATATGGATCTGAAATTAT ATGGTTTTTTTAAAAATTTTCTACTAGAGTCCATTTCTGGTTAGA Right flanking sequence: Indices 8440481 -- 8440980 GTTGTTACTCTAGTAACAAAAGACTTTAAAATAATTATAGTCATGTTTTATTTTGAATTTACAAT AACCTATCTGCTGGCCATATAAACAATTTACTAATATAAAATAAATTTAAGAATAATTTTGAAAT ATTTTTATCAATTTTTTTAGAAAGTGTTGAATGTTTTTGGCTCATGTGCGGAATATGCGACAAAA AGCTTTAAAATTCTGTTATTGTGTTGTCTGTCCAAATCTGGCAAACAAAAAAGAAATGGGGGAAA ATTTGGTTAAGAATAACTCGATCTCTATTATTCAAATAGGATTTGAAAAATATCACAAAATCGTA CAACACGTTGGATACTTTTTGTATACCGTATTTTCCCATATAGCTGTAATATTTTGTATAAATGT GAAAGTATTTGGAAAGAGGTAATCTGAAACTATTGACAAACACAATCACAACATCACTTGCTAAC CTGAAACGCCGGAATTTTAGCTGATCCGGGCGGAACAGACGAAAC Found at i:8448007 original size:17 final size:18 Alignment explanation
Indices: 8447983--8448023 Score: 68 Period size: 17 Copynumber: 2.3 Consensus size: 18 8447973 TTTAGCAACC * 8447983 AAAATTTTTTGAAATGT- 1 AAATTTTTTTGAAATGTG 8448000 AAATTTTTTTGAAATGTG 1 AAATTTTTTTGAAATGTG 8448018 AAATTT 1 AAATTT 8448024 AATTATGTAG Statistics Matches: 22, Mismatches: 1, Indels: 1 0.92 0.04 0.04 Matches are distributed among these distances: 17 16 0.73 18 6 0.27 ACGTcount: A:0.39, C:0.00, G:0.12, T:0.49 Consensus pattern (18 bp): AAATTTTTTTGAAATGTG Left flanking sequence: Indices 8447483 -- 8447982 TTACATTTAGAGACATTCAAAAACCAAATAAACTTCAAATAAAGGAGACATTGATTATATTTATA TCTCGTTTCCTTTAAACTATTCTAGGTTCATTTCCACTTGATTTTGGATGTACTTTTAAGTCGAT TTACTTTTTTATTTTAGTTGGCAACATAAAACATTCAATCCCAATTTTGGCATGACCCAAAATCA TGTGAGAACAAGTTTTGATGACGCACTTTTTTTACACAGTTTATTACTGAACTGTGCAGAAAAAT TTGGAATTTGGGAAGTTATATTGTGAATTTTATTTTGCTTGGAAATTGGACAGTTCTAATGAGAT TTTTTTAAAGGTATTGGGGAAAAATCAAAAGGGAAAAATCTGAAAATTTGAAAACTATGCGAAAT AAGGTATTATTTTTCAATCAAAAGATTGCATAAATGCTCGAAATTGATCAGAACGTCTAATTTTT TGGTGAAATTTGGCAGTGCAAAACATTCTGAAAATTTTAGCAACC Right flanking sequence: Indices 8448024 -- 8448523 AATTATGTAGGACTTTTGTAGGCTCATACAAAATCCCAACTAGCAATACACGTAATAGAGTGGAA CATAAACTGTGCGGTGATCATCGAACAATGGAGCAAATTCAGTTTTTTAAACCAAAAACAAAATT ATAGTATTTCAAGTTTTTCTAGATATCTCTAATCTACAAAACAATATGAATGATTTGATCAATCG CCAATAAAAATGAAGGCAAGTAAACTTTTGATAGTTTCACTAACAGTTATGAATTTGATAACGTC ATTATTCTTTAATCATACTCAAAATTATTTCAACGAGACACAAAAAACTGCGGGAAATAGGTTAG AATGGAAGCGTAGTTGGACTGTTTAACAAGTGTAGAATCGTGAGAGACAAGAGACGTAGACGGAA CACGGTGGCCAACTGTATTGACAAATGATGCGAGAATATAAGAGAGACATAGAGATGGAGAGGAG GAAGACCAGTGAATGAGAGAAAAACGTATCAATATACAAGGAATC Found at i:8452819 original size:14 final size:14 Alignment explanation
Indices: 8452800--8452828 Score: 58 Period size: 14 Copynumber: 2.1 Consensus size: 14 8452790 TTCAAAATAC 8452800 TATTTTTGAATGCA 1 TATTTTTGAATGCA 8452814 TATTTTTGAATGCA 1 TATTTTTGAATGCA 8452828 T 1 T 8452829 TTGAAATGCA Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 14 15 1.00 ACGTcount: A:0.28, C:0.07, G:0.14, T:0.52 Consensus pattern (14 bp): TATTTTTGAATGCA Left flanking sequence: Indices 8452300 -- 8452799 AAACAAAATGCATTTTATTCTTGTAAATATTTTCAAAATTGAAGTATTTGCAGCATTGCCAAGTT TGTAGAAATATGTACAAAACTATTCAACAAAACAGTTTTTGAAAATATTTTACATCGAACATCAT GAAACTAATTGAAAATCTCTGCAAGTGTTCGCTTTAAAATTATACTGAATTTTTTGGAATTGGGC TTTTCCAGCATGTTTCCAGCTGAGATGCACATTGTACATCACTATGTTTTGGTACTTGTGTTAGG TAGAGTTTGCAAGAAAAAAGGTTTACTAAATCTTTTAAAATTTTTTCAGAAAATGTTTTAAGCCT TTTTAGATACAGTCAAGAGGTACTCATAATTTTGTCGACCAAACAATTTTTTTTTCAAATGCTTT TAAAAATTGTAGAGCTTCGACCATGAATAAATGCTATAAAATAACTCAAAAAGTCCAAACTGTAC AAACAATTGGTAATTTGCCAAAACTGTCTGCAAATTTCAAAATAC Right flanking sequence: Indices 8452829 -- 8453328 TTGAAATGCATAGAGAAAATCCGTCTGAAACTATTTCAATATTAAATCAAGGAACTACGTAATTT GTTTATTCAACAAATTTCAAAGTTGTTTTTGTTTTTGCACAGGCAAGATCCTATTCAGACTCTCT TAATTTTTGGATGTATTTCTCTAAAGAACCACTCCTAATCTATGCCAAGATCAGTTCTTCTTTCC AGTAAACCTAAAACTAAAACCAAAAAAAGTTTGGTTTCATGTGTGGTGTAGTAACCCAATAGCTT TTCGTTTTTTTTTCTTCTCTTTGTTTCATTTCCGAGCAGTGCATCATCATCATTCTCATCATAAA CTCTTTTTTTTGCTTCTCACTCCAATGTTTACAAATTCGAATACCACACACAAACACATACACAT ACTAACAAAAACCCAATTTTTCCTCGAAAAAAACGTTTGAAAACCGTGGAAAGCTTATCCGTCAA TTTTTGAGTTATTGTTTTTTCTAACTCAGTCTACACCATTTTTAA Found at i:8452833 original size:10 final size:11 Alignment explanation
Indices: 8452818--8452839 Score: 37 Period size: 11 Copynumber: 2.1 Consensus size: 11 8452808 AATGCATATT 8452818 TTTG-AATGCA 1 TTTGAAATGCA 8452828 TTTGAAATGCA 1 TTTGAAATGCA 8452839 T 1 T 8452840 AGAGAAAATC Statistics Matches: 11, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 10 4 0.36 11 7 0.64 ACGTcount: A:0.32, C:0.09, G:0.18, T:0.41 Consensus pattern (11 bp): TTTGAAATGCA Left flanking sequence: Indices 8452318 -- 8452817 TCTTGTAAATATTTTCAAAATTGAAGTATTTGCAGCATTGCCAAGTTTGTAGAAATATGTACAAA ACTATTCAACAAAACAGTTTTTGAAAATATTTTACATCGAACATCATGAAACTAATTGAAAATCT CTGCAAGTGTTCGCTTTAAAATTATACTGAATTTTTTGGAATTGGGCTTTTCCAGCATGTTTCCA GCTGAGATGCACATTGTACATCACTATGTTTTGGTACTTGTGTTAGGTAGAGTTTGCAAGAAAAA AGGTTTACTAAATCTTTTAAAATTTTTTCAGAAAATGTTTTAAGCCTTTTTAGATACAGTCAAGA GGTACTCATAATTTTGTCGACCAAACAATTTTTTTTTCAAATGCTTTTAAAAATTGTAGAGCTTC GACCATGAATAAATGCTATAAAATAACTCAAAAAGTCCAAACTGTACAAACAATTGGTAATTTGC CAAAACTGTCTGCAAATTTCAAAATACTATTTTTGAATGCATATT Right flanking sequence: Indices 8452840 -- 8453339 AGAGAAAATCCGTCTGAAACTATTTCAATATTAAATCAAGGAACTACGTAATTTGTTTATTCAAC AAATTTCAAAGTTGTTTTTGTTTTTGCACAGGCAAGATCCTATTCAGACTCTCTTAATTTTTGGA TGTATTTCTCTAAAGAACCACTCCTAATCTATGCCAAGATCAGTTCTTCTTTCCAGTAAACCTAA AACTAAAACCAAAAAAAGTTTGGTTTCATGTGTGGTGTAGTAACCCAATAGCTTTTCGTTTTTTT TTCTTCTCTTTGTTTCATTTCCGAGCAGTGCATCATCATCATTCTCATCATAAACTCTTTTTTTT GCTTCTCACTCCAATGTTTACAAATTCGAATACCACACACAAACACATACACATACTAACAAAAA CCCAATTTTTCCTCGAAAAAAACGTTTGAAAACCGTGGAAAGCTTATCCGTCAATTTTTGAGTTA TTGTTTTTTCTAACTCAGTCTACACCATTTTTAAAAAACCAGGAA Found at i:8460219 original size:16 final size:16 Alignment explanation
Indices: 8460188--8460220 Score: 45 Period size: 16 Copynumber: 2.1 Consensus size: 16 8460178 TAAAACTTTC * 8460188 TCAAGTTGAATTGATT 1 TCAAGTTGAATGGATT * * 8460204 TCAGGTTGACTGGATT 1 TCAAGTTGAATGGATT 8460220 T 1 T 8460221 TATATAGTTC Statistics Matches: 14, Mismatches: 3, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 16 14 1.00 ACGTcount: A:0.24, C:0.09, G:0.24, T:0.42 Consensus pattern (16 bp): TCAAGTTGAATGGATT Left flanking sequence: Indices 8459688 -- 8460187 GCAAATGGGTGATGGAAGTGTACTACTATCCGGGTGCCGTTGGTTTTTCTGAATGGCACAAATTA TCTCGACGAGGTGAAATGCACATTCATGGATAATTTACTGCTCCGTTCATCACACTTTTGTCCAT TTTCCCATCTCTTCCGTGGATCTCAATGTCCTCCATCCGGTGGACCACCTTTTCGATCAAATAAT TGTTTTATTTCTCTAATTCTTCCCCACAGTTCCTTTCATATAGAATTTTTATATTTTCTATTATA TATGAACATTTGTAAACGGTGATCTTAAGTAATTTTCAAAGAATTTGAAATTTGAAAAATTTAGC TCTATTTCAAAATCGCTGTAGCAGTTTTATTCAAACTTACTAATTGTGTATTTTTGTATGTACAA ATAGTTTTTTTTTCGTGTAGAGCTTTATCCTGTTTCAGTTCTTCCGTTCAACTACTGCCACTGTT TTCCTGTCAAAATTGTCGATGACTCTCTCACCCGATAAAACTTTC Right flanking sequence: Indices 8460221 -- 8460720 TATATAGTTCACCGGTGTATCAAAATTAAAACATGCAGTAAAAAGGTACAAAATATACAAATATA GTGGGGAAGATGGGTTATAAATTGAAACAAATGTGTACACAGCTAAACTAAAACTATTGAAAAGC AGCAGATGGACAACGGGAAAGAGAAGGTGTCGAGCAGCAGATGTCATTGTCATCAATCACGTCGA GAAGCTCTTGTGGGGTAGGTCCTCCGGAATACTGGAATTAGGAATAGAAACTTTCGAACGAGGGA TTCGAAACTATGACCTATCTAGACATATAAGTTTAATTTAATTTTCCTTATGATATAAAAAGTGA AAGATTGTTTAAAATCTTACATTTGACAAATTGATTAACGATCTTGGGGACTGTGCTAATTGCGG TTTGATAAGTTCCGATTGATTTGCAGCAGCAGGTGGGTTCACTTGTTGTTGCTGTGGATGTGATC CATTTTTAAGATGAAATTGGTCAAGTGCTGAAGTTAAATCCCATA Found at