TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_III Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 13783317 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:9924864 original size:18 final size:18 Alignment explanation
Indices: 9924817--9924853 Score: 74 Period size: 18 Copynumber: 2.1 Consensus size: 18 9924807 ACCGGCAGCC 9924817 AAGTTGCCGGTTGCCGAA 1 AAGTTGCCGGTTGCCGAA 9924835 AAGTTGCCGGTTGCCGAA 1 AAGTTGCCGGTTGCCGAA 9924853 A 1 A 9924854 TTTTTCGGGT Statistics Matches: 19, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 18 19 1.00 ACGTcount: A:0.24, C:0.22, G:0.32, T:0.22 Consensus pattern (18 bp): AAGTTGCCGGTTGCCGAA Left flanking sequence: Indices 9924317 -- 9924816 ATTTGCCGAACTTATGAAGAATCCACAGTTGTTCCATGCTTGATTCTCTGTGAGTTCTGACTCCA ACTCTTAACGCATCTTACTTCTGCTCAGAAAGTCTTGATCAAAAACTGATATCATTCCAATGCGG ATCCAGTGTTTTTGAAGGTTCCTCTAATAGATTATTTTCAGATGCGGGAAAATCAAAGATGTGCT GCATCAACAACATAAATTTTTCGTAGCTATATTAATTAATATGCTGATTATTTCAAATTGACTTT TCAGAATTCGGTTGGTGTTTGTTATATATATAATTAAATGTACCTTTCGAAAATTGTAAAAGTGA AAAATGTGAAATGCATATACATTGAATACATTGAATAAATACATTGAATTGAATATGCTAAAGTA TCATTTAGGGCTGTAAAAACTACTAAAATATTTGTGGGTGCGTGCCAGGTGTAGCTGCATCATAA CTGCCTTCCTACCTATGCACCAGGGCTGTGCGGCAACCGGCAGCC Right flanking sequence: Indices 9924854 -- 9925353 TTTTTCGGGTTCGGCAACTTCGGCAATTGCCGGTTGCCGAAATTTTTTGAGTTCGGCAACTTCGA CAACTGCCGATATCAATGTCAAACATTTTATAGCTCAGAAAAAAGCATTCAGAGAGCCTAAAAAC TTCGAAAATTTCACTGTAAACGAAAAAAACGACCATACTTTTTATCCAAAACACTCAAAAATATA ATTTCAACAAAACAAATTTTGAAACCTGGTTGCCGGTTGCCGAAAAGTTGCCGAATTTTCGGCAA CCAAATGTTGCCGGTTGCCGAAATTTTTCGGGTTCGGCAACTTCGGCAATTGCTGGTTGCCGAAA TTTTTTAAGTTCGGCAACTTCGGCAATTGCCGGTTGCCGAAAATCTCGGTTGCCGCACAGCCGTG CTATGCACCAGGTACCTGCCTCTCTGAAAATCCTTACGCATATTGAAGTACAGATTTAATCAAAA TGCCACCCTCTGGATCAGAAATCACTGGTGTGTTTTTTTCAGTTT Found at i:9924897 original size:42 final size:42 Alignment explanation
Indices: 9924838--9924927 Score: 152 Period size: 42 Copynumber: 2.1 Consensus size: 42 9924828 TGCCGAAAAG * * 9924838 TTGCCGGTTGCCGAAATTTTTCGGGTTCGGCAACTTCGGCAA 1 TTGCCGGTTGCCGAAATTTTTCGAGTTCGGCAACTTCGACAA * 9924880 TTGCCGGTTGCCGAAATTTTTTGAGTTCGGCAACTTCGACAA 1 TTGCCGGTTGCCGAAATTTTTCGAGTTCGGCAACTTCGACAA * 9924922 CTGCCG 1 TTGCCG 9924928 ATATCAATGT Statistics Matches: 44, Mismatches: 4, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 42 44 1.00 ACGTcount: A:0.18, C:0.24, G:0.27, T:0.31 Consensus pattern (42 bp): TTGCCGGTTGCCGAAATTTTTCGAGTTCGGCAACTTCGACAA Left flanking sequence: Indices 9924338 -- 9924837 TCCACAGTTGTTCCATGCTTGATTCTCTGTGAGTTCTGACTCCAACTCTTAACGCATCTTACTTC TGCTCAGAAAGTCTTGATCAAAAACTGATATCATTCCAATGCGGATCCAGTGTTTTTGAAGGTTC CTCTAATAGATTATTTTCAGATGCGGGAAAATCAAAGATGTGCTGCATCAACAACATAAATTTTT CGTAGCTATATTAATTAATATGCTGATTATTTCAAATTGACTTTTCAGAATTCGGTTGGTGTTTG TTATATATATAATTAAATGTACCTTTCGAAAATTGTAAAAGTGAAAAATGTGAAATGCATATACA TTGAATACATTGAATAAATACATTGAATTGAATATGCTAAAGTATCATTTAGGGCTGTAAAAACT ACTAAAATATTTGTGGGTGCGTGCCAGGTGTAGCTGCATCATAACTGCCTTCCTACCTATGCACC AGGGCTGTGCGGCAACCGGCAGCCAAGTTGCCGGTTGCCGAAAAG Right flanking sequence: Indices 9924928 -- 9925427 ATATCAATGTCAAACATTTTATAGCTCAGAAAAAAGCATTCAGAGAGCCTAAAAACTTCGAAAAT TTCACTGTAAACGAAAAAAACGACCATACTTTTTATCCAAAACACTCAAAAATATAATTTCAACA AAACAAATTTTGAAACCTGGTTGCCGGTTGCCGAAAAGTTGCCGAATTTTCGGCAACCAAATGTT GCCGGTTGCCGAAATTTTTCGGGTTCGGCAACTTCGGCAATTGCTGGTTGCCGAAATTTTTTAAG TTCGGCAACTTCGGCAATTGCCGGTTGCCGAAAATCTCGGTTGCCGCACAGCCGTGCTATGCACC AGGTACCTGCCTCTCTGAAAATCCTTACGCATATTGAAGTACAGATTTAATCAAAATGCCACCCT CTGGATCAGAAATCACTGGTGTGTTTTTTTCAGTTTCCAATTTTCTTTATTTTCTCGGATCCTAT ATATTTTTCTAATGGCAATAATGGCAACTCGACTGAATAAAATAC Found at i:9925179 original size:42 final size:42 Alignment explanation
Indices: 9925121--9925220 Score: 172 Period size: 42 Copynumber: 2.4 Consensus size: 42 9925111 CAACCAAATG ** 9925121 TTGCCGGTTGCCGAAATTTTTCGGGTTCGGCAACTTCGGCAA 1 TTGCCGGTTGCCGAAATTTTTCAAGTTCGGCAACTTCGGCAA * * 9925163 TTGCTGGTTGCCGAAATTTTTTAAGTTCGGCAACTTCGGCAA 1 TTGCCGGTTGCCGAAATTTTTCAAGTTCGGCAACTTCGGCAA 9925205 TTGCCGGTTGCCGAAA 1 TTGCCGGTTGCCGAAA 9925221 ATCTCGGTTG Statistics Matches: 53, Mismatches: 5, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 42 53 1.00 ACGTcount: A:0.19, C:0.22, G:0.27, T:0.32 Consensus pattern (42 bp): TTGCCGGTTGCCGAAATTTTTCAAGTTCGGCAACTTCGGCAA Left flanking sequence: Indices 9924621 -- 9925120 TTTCGAAAATTGTAAAAGTGAAAAATGTGAAATGCATATACATTGAATACATTGAATAAATACAT TGAATTGAATATGCTAAAGTATCATTTAGGGCTGTAAAAACTACTAAAATATTTGTGGGTGCGTG CCAGGTGTAGCTGCATCATAACTGCCTTCCTACCTATGCACCAGGGCTGTGCGGCAACCGGCAGC CAAGTTGCCGGTTGCCGAAAAGTTGCCGGTTGCCGAAATTTTTCGGGTTCGGCAACTTCGGCAAT TGCCGGTTGCCGAAATTTTTTGAGTTCGGCAACTTCGACAACTGCCGATATCAATGTCAAACATT TTATAGCTCAGAAAAAAGCATTCAGAGAGCCTAAAAACTTCGAAAATTTCACTGTAAACGAAAAA AACGACCATACTTTTTATCCAAAACACTCAAAAATATAATTTCAACAAAACAAATTTTGAAACCT GGTTGCCGGTTGCCGAAAAGTTGCCGAATTTTCGGCAACCAAATG Right flanking sequence: Indices 9925221 -- 9925720 ATCTCGGTTGCCGCACAGCCGTGCTATGCACCAGGTACCTGCCTCTCTGAAAATCCTTACGCATA TTGAAGTACAGATTTAATCAAAATGCCACCCTCTGGATCAGAAATCACTGGTGTGTTTTTTTCAG TTTCCAATTTTCTTTATTTTCTCGGATCCTATATATTTTTCTAATGGCAATAATGGCAACTCGAC TGAATAAAATACGTTCCAGTTTAATAGAAAATTTGTAAATAGTTATTTTATTATTTTTCATAACT ACTTCTCAATTTTTTTTCAAAAAGCATTTATAATATACCAATCAATTGAAACAACTTCTAGTTTC TCCTGGAAACTTTCCAGCAAGTTCGAGATTTCCAGCATTAAATGTTTTCTCTGCAGAACTTCCCC AGTTGGCGTAAGATTTTGGAATATTGATGCGGAGGACTCTTTGGCACGGCTGAAAATTACTATAG GAATTTTTTTATTAGAATAAAAAATTCTAAACTCACCGTAATTCC Found at i:9926186 original size:17 final size:17 Alignment explanation
Indices: 9926153--9926185 Score: 45 Period size: 16 Copynumber: 2.0 Consensus size: 17 9926143 TTTTTTCAAA * 9926153 ACTTCATTTTTATTTTT 1 ACTTCATTTATATTTTT * 9926170 ACTT-ATTTATATATTT 1 ACTTCATTTATATTTTT 9926186 TTCTAGTAAA Statistics Matches: 14, Mismatches: 2, Indels: 1 0.82 0.12 0.06 Matches are distributed among these distances: 16 10 0.71 17 4 0.29 ACGTcount: A:0.24, C:0.09, G:0.00, T:0.67 Consensus pattern (17 bp): ACTTCATTTATATTTTT Left flanking sequence: Indices 9925653 -- 9926152 GGCACGGCTGAAAATTACTATAGGAATTTTTTTATTAGAATAAAAAATTCTAAACTCACCGTAAT TCCGTCCTTACAATCATGGAAAACAGCCAAATATGGCTCGATTCCGGTGATTTCCTTGGTAGATC CACTCAAATTGAATTCTCCATTTGAGTCAGCCTTTCCTGATGCCATCTTATCATCTCTGTCAAGA AATCCCGGCAGGAAACTATCTGAAAATAGACAGGTAAATAGAAAATTCATTTTCAGAAGCTTTTC ACATACTGTCAGATTCCATTAATTTGACTTTCACTCCCGATGCAGGCCTTCCTTCACACATAAGT TTTCCTTTTGCCTGAAGTGTAGTTAGAATTTTTGTAACTATTGGATTTATTTTTGTATTAGATTC TCAAATAACATGGAACCACGTCTAATTAGTAAAAAAAACCATTTCTAATCAGCTTTTCGACCAAT TCTAGAGTAATTAGTGAGATAAAAAATTTCGTGATTTTTTTCAAA Right flanking sequence: Indices 9926186 -- 9926685 TTCTAGTAAAATGCAGTCTGAATTTTTAATTTTACAGAAGCCTAAAAAATCTGAAAAGTGACGTT TGAATATGTGAAACAGCGATGCCGTTTTTCTCACAATACTATACGCTATTTTTCAGATTTTCAAG TTTTTTAAAACAAGATCTGATTTCCAGTGACATATTTCTCCAGCAAATTGATTACTCGGAATTTT TTGGTCAAAACATTTAATTTTCAAAACCCTTACTGCTGCCCATTGTGTTCTTCCGATCAAGTTAA TCGCACTTGTAGAGCCAATAAAAAGAGCAATTGAGACCAGTAAAAGGCGCATATTTGTTCACGAC TGAAACTTCAAAAGGTTATTAAAAATAAATTGAATATTGAATAACCTAGATTGACACACAAAATA TTCAATAACAGAGAAATGAATCATAATATATATATGACGAAGAAGACACAAGGCCTATAGGAATG ATAAGATCATATTGAGAAAAGAAGAAAATCAAAATCTTCAATTTC Found at i:9929787 original size:12 final size:12 Alignment explanation
Indices: 9929770--9929793 Score: 48 Period size: 12 Copynumber: 2.0 Consensus size: 12 9929760 TAAATTGTAT 9929770 TTTACCTAGATA 1 TTTACCTAGATA 9929782 TTTACCTAGATA 1 TTTACCTAGATA 9929794 GACGGCAAAA Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 12 12 1.00 ACGTcount: A:0.33, C:0.17, G:0.08, T:0.42 Consensus pattern (12 bp): TTTACCTAGATA Left flanking sequence: Indices 9929270 -- 9929769 ATAGGTGAGCGGACAATTAAACTGCCTTGGTAAACCGGCAGTGGGAGTACGTATCGACTTGATGG AGTCAGACAGTGAGTCACTATTAAAAAGTTAAATATGGAACACATTGAAATTATAGATAATGGTG AAGAGACGGGAATTATTGATGACAATGATTTTATGGGATATACCTATACTGACTCGGCTGGATTC TTTAATATGAGTGGTTCAGAAGTTGAGATTTCTGGTATTGAACCATATGTGAACATTTTTCATAA ATGCAATGATGGATTGTCGGTAAGTGGGAACTATTCTTGAAAATTTTGGTTTCGTCTGTTCAGTC TAAAAAGTTTTTGAGTCGTTCTGAAAGGCCGCTGTAGGGGGCTTTATCTGAAAACTATTTTTAAC AGGCTTTACAGGTTTGTATTGAAAACCGTAGAAAAAATAATTGTGTCCTTGTGGTAGAAAAATAG TCTGGTTCGATGTGAAATTTAAAAAAAACTATGTGTAAATTGTAT Right flanking sequence: Indices 9929794 -- 9930293 GACGGCAAAAGTTATGGCAGAAAATTTTAAAAATTTGACAAAACGTTGCAAAGTGGCTAAACGTT GGAATGAAGTTGCCAAAAATTGACATAAAATTGAAAAAGTTTGGCTTAAAGATGGGAAAGTTTAA TAGAAATGTTTGGCTAAAAGTTGCCAAAATTAGGCAGAAAAATTTCAAAGTTAGGCAGGAAGTTG TCGAAATATGACAGAAAATTGCCAGTATTAGGCAGAACTTTGCGTATTATAGGGTCGTGGAATTT GGAAAATTAATTTAAATTGAACTTCTATAACCCCAAAAATTTCAACAATTGCAGCCTTGCCAACG TCAACTCCGTGTCGACATTCCAAAATCAGCTACAGCTTCGGGACCTGCACCAAATGAAACATTCT CTATTGGAACATTGGAGTTATCTTCTCGAAAAGTAATTGGAGAACGTCGTAGCTGTGCATATCGA AACCTGACACAGACCTCTTAACCTTTTAACAAGTGATAATGAACA Found at i:9931733 original size:14 final size:14 Alignment explanation
Indices: 9931714--9931743 Score: 53 Period size: 14 Copynumber: 2.1 Consensus size: 14 9931704 AAAAATGCAT * 9931714 AAAAATTTTATTTA 1 AAAAATTTCATTTA 9931728 AAAAATTTCATTTA 1 AAAAATTTCATTTA 9931742 AA 1 AA 9931744 TTAAATCAAG Statistics Matches: 15, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 14 15 1.00 ACGTcount: A:0.53, C:0.03, G:0.00, T:0.43 Consensus pattern (14 bp): AAAAATTTCATTTA Left flanking sequence: Indices 9931214 -- 9931713 TGTTTGCTGTTAACTTATTTTTTTAAAATCTTTCCTAAAAAATATTTTCATAGGAGTTTCAGACA ATTCTGAAAGCATACAATTTCTTGTTTTGAAAGTTTTTTTTTCAAGTTTTCAAAGTTTTTAATTT TGCTGAAAATCATCAGGATTCATGTTGTCGTTAATAGAAAAAAGCATGTTAAAAGTTAAAATTTA ACACTATGTATTTTAGAAAAAATCAATGTTCTTCAGTTTTTTATTATACAGTTAAAATTGGTTTA TATTTTCAATAAATTTAGAAATTGAACACATATTCTCTCAAGAACACTGTCATTACGTGCAACTA ATGCCTAAACCAAAATTATAGTTCTTATTTAGGAATTAACAGCTTTAAAAAGAACTTATGCACTT TATGCCATAAGTCAGATTACGCGGAATCCGGAACATTTTTTTGCAACATTTCTAAAAGTACAACG CATTATCAAATGTTGCTAAATTTCCTTTGTATCTGAAAAATGCAT Right flanking sequence: Indices 9931744 -- 9932243 TTAAATCAAGTTAACTTATCAAATAAGCTTGACAGTGTAACGATTTTTTATAGAAAAAATTTCAA ATGTTCATAACTTTGAAGTCAATTTTTACAAAGGAATATACGGAACGAAAGAGTCGATTGAGAGT CAAGACTTTCTGAAACTGCTGGAACTGTTAAAATTACGACAGAATCCAGATTTCTTGGTTGCAGA TTGAAAAAAAGTGTTCAAAAAACGTTTTATATATTTTTTGTTACTCTATGAGTTCAAACCGTGAC TTTGGTAATTCAAAACTATATTTCATCACTTCTACCCTTATTTTGCCCTGATCTTGTTCTTTGAA TAGTTCAATTACTACCTCACAGTTATGATCTGATATCAGTTTCAAATTGAAACTACCTGTTTTTC ACCACTCTTTTTCTATTGGCGAGGTAATGCCCGCTCGTGACAAAACTTACCTTCTAATCAATATA AAAATTATCGGGTTTTCACAATGAAAAGTTTCAATTTTCCGTCAT Found at i:9933119 original size:15 final size:15 Alignment explanation
Indices: 9933090--9933119 Score: 39 Period size: 15 Copynumber: 2.0 Consensus size: 15 9933080 TAATTTAGGA 9933090 TTTGATTGTCCATTT 1 TTTGATTGTCCATTT * * * 9933105 TTTGGTTTTCGATTT 1 TTTGATTGTCCATTT 9933120 AATTATACCA Statistics Matches: 12, Mismatches: 3, Indels: 0 0.80 0.20 0.00 Matches are distributed among these distances: 15 12 1.00 ACGTcount: A:0.10, C:0.10, G:0.17, T:0.63 Consensus pattern (15 bp): TTTGATTGTCCATTT Left flanking sequence: Indices 9932590 -- 9933089 TTTTAAAAGTTTGAGTCAACAATAGCCTTTAAGAGAGAAGCAGAGACAGCATCAAGTCCTGGTAT TGAAGATGCATGCCTTAAAACTAACTATAAGTAGGCATTTTTGTACCTAGACGGTTGCCCTACGT CCTATTCGTTGCAAATAACAAACTTAAAAATTCATTAACTAATTTCTAATGTTAAAAAAAATTCC AGGAAAACGTTGAAGATACAATATGCTCCGAAACACCTCCAGAAAGCAGCATACCAAACCGAGAT GAACTTCTCGAACTCATACGAAAATCTAAAATTGAAGATCATAAATTTGACGAACACGTTCGCAA AAAGCGTCAACTATCCCGAATAAGTTATCAAGAATATCTTGATAACCTCGGAAAAGCTGATTATG ATGTTCGAATTGAAGAAGGATGGACAGAAATTTTATATCCATTTGGAACATGGGCTATGGATAAA CAACTTATGGGTCAAGCTGGAAGAGAAACACAGACTAATTTAGGA Right flanking sequence: Indices 9933120 -- 9933619 AATTATACCATGGTGTATCCTATGGGAATGCTTTCATTTGGACTTCCACCATTTTCTGCTCCACC ATGGACTTTTCCTAATCCAGCATGGCCAAAGCAAAGGGTTAGTTAACATGGAAACACTTGAAATA TAGTAGATATAAATTTTTGAGTTGAAGAATTTTGGTGCCAGGCAAAAATGCTGAGGGAGCCTTTG ATTTTTTAAAATGTTTCCTAAATTTTCCATTAAAAATGATCTAAATTTTCAAGTGGAGCTTCACT CGTAATGATTTGATTTTCAGGATCATTCATTCGTTGCTGCATTCTATGCGGATGCAATGTTCCAA TGGATCGGAAATACCAAAATCAGTAATGTTTTCTTCAGAAGTGTCCATAGACCACGAGTGAGTGA TTCAATTGTTTCATATACCGACCACCCTCCCTCTTATCACATTACACTTATTAACATTAATTATT GATTTTATAACCGGATTATGAAACCGAAGAAGAGTGCATGGGTAA Found at i:9935220 original size:11 final size:11 Alignment explanation
Indices: 9935201--9935223 Score: 39 Period size: 11 Copynumber: 2.1 Consensus size: 11 9935191 AATGTTGTCC * 9935201 TTGTTCTTGCG 1 TTGTCCTTGCG 9935212 TTGTCCTTGCG 1 TTGTCCTTGCG 9935223 T 1 T 9935224 AGACTCCCTC Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 11 11 1.00 ACGTcount: A:0.00, C:0.22, G:0.26, T:0.52 Consensus pattern (11 bp): TTGTCCTTGCG Left flanking sequence: Indices 9934701 -- 9935200 TCCAATGCATGGAGGAATGGCAATTAATGTCTCTGGGCCGTGCTTAAGGCCTGCGGACAGTGTTA AAGTAGGCTTTTAAAAAGTACTGGGCATGTGCTCCGACTAGGAACAAAATGTTATGTTTGCAAAA CCCTGTAAACTAGTGGTTTAGTTCAGCTCAAGAGTTGAAGCCTAGCTCTTTTCAATATTTTATCC ATGTGTACAAATACGAGTTTGAGTCAAATAATGGCTTAAATTGGATCACACTTAGGCTGAATTTT GGCACTGGCTAGACCATATCTTATCCACGCTTTGAAAATTTCAGATCAATGTTTTTTTGGGTCCT AAAGCATTGCATTCAATTGAAATTAATAAAACATTTATATGCAGTACCTCTGTAACTTATTGCTA CGTTTAAAAATTTAGGCAACTACAAGTTTATAGAACTCACGTAATAATGTTCGCTTGAACTAGAG TTGGTGCAGACGGGCAATCGTTTCCATTCCATTAGAATGTTGTCC Right flanking sequence: Indices 9935224 -- 9935723 AGACTCCCTCATAGTGGCAGAGCGATTCCCGAGTGAAAATAATCACGGAATGAATCACGGTAATG TGTAATTTTCTTGCAGGTAAACTTTGAAAATTGGCAGACAAGTTGCACCCGTTTGAGCCGAGTAC GTGCTCGTTGCATTATGCCAATGTTCCATAAAATTGGACTAGTCCCAATTCGAATGAGTCGTGAT GGTGGACAATCTTTCCCATTCTTCGGAAAATTTTATGTAGTGAACTCTGAACGAGCCCCCGCTTC AGTGTCACTCAAAGATTCGGTGGATAACAAAACAAATCGATGGTAAGGGAGACAACTTTTCAGTT AAAAAATTATAATCTTCAGGTACGAACCTTACGCGCAAGAATTGGCACTGGGGTGGCAAGCAATG AATTTGACATGGAACACTGGGGCAAGAGTGGATATTAGTTTGTTTGGATATTGGGAAGACGCTGA TCGATCCCATTTTGAAAGAATCGATTACTTGGCAAGAGGGATATC Found at i:9935281 original size:12 final size:13 Alignment explanation
Indices: 9935264--9935288 Score: 43 Period size: 12 Copynumber: 2.0 Consensus size: 13 9935254 GAGTGAAAAT 9935264 AATCACGG-AATG 1 AATCACGGTAATG 9935276 AATCACGGTAATG 1 AATCACGGTAATG 9935289 TGTAATTTTC Statistics Matches: 12, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 12 8 0.67 13 4 0.33 ACGTcount: A:0.40, C:0.16, G:0.24, T:0.20 Consensus pattern (13 bp): AATCACGGTAATG Left flanking sequence: Indices 9934764 -- 9935263 TAAAGTAGGCTTTTAAAAAGTACTGGGCATGTGCTCCGACTAGGAACAAAATGTTATGTTTGCAA AACCCTGTAAACTAGTGGTTTAGTTCAGCTCAAGAGTTGAAGCCTAGCTCTTTTCAATATTTTAT CCATGTGTACAAATACGAGTTTGAGTCAAATAATGGCTTAAATTGGATCACACTTAGGCTGAATT TTGGCACTGGCTAGACCATATCTTATCCACGCTTTGAAAATTTCAGATCAATGTTTTTTTGGGTC CTAAAGCATTGCATTCAATTGAAATTAATAAAACATTTATATGCAGTACCTCTGTAACTTATTGC TACGTTTAAAAATTTAGGCAACTACAAGTTTATAGAACTCACGTAATAATGTTCGCTTGAACTAG AGTTGGTGCAGACGGGCAATCGTTTCCATTCCATTAGAATGTTGTCCTTGTTCTTGCGTTGTCCT TGCGTAGACTCCCTCATAGTGGCAGAGCGATTCCCGAGTGAAAAT Right flanking sequence: Indices 9935289 -- 9935788 TGTAATTTTCTTGCAGGTAAACTTTGAAAATTGGCAGACAAGTTGCACCCGTTTGAGCCGAGTAC GTGCTCGTTGCATTATGCCAATGTTCCATAAAATTGGACTAGTCCCAATTCGAATGAGTCGTGAT GGTGGACAATCTTTCCCATTCTTCGGAAAATTTTATGTAGTGAACTCTGAACGAGCCCCCGCTTC AGTGTCACTCAAAGATTCGGTGGATAACAAAACAAATCGATGGTAAGGGAGACAACTTTTCAGTT AAAAAATTATAATCTTCAGGTACGAACCTTACGCGCAAGAATTGGCACTGGGGTGGCAAGCAATG AATTTGACATGGAACACTGGGGCAAGAGTGGATATTAGTTTGTTTGGATATTGGGAAGACGCTGA TCGATCCCATTTTGAAAGAATCGATTACTTGGCAAGAGGGATATCAAATACTGGATCATATTCTT TTAGACCTCAACAGTTAACCAAACAGTTTTTGTTGAGGGTAAGTT Found at i:9938684 original size:31 final size:31 Alignment explanation
Indices: 9938646--9938744 Score: 163 Period size: 31 Copynumber: 3.3 Consensus size: 31 9938636 AGTTGTCGAC 9938646 TCTGCTAAATATTTAGCATACCCACATTGGG 1 TCTGCTAAATATTTAGCATACCCACATTGGG ** 9938677 TCTGCTAAATATTTAGCATACCCATCTTGGG 1 TCTGCTAAATATTTAGCATACCCACATTGGG * 9938708 TCTGCTAAATATTTAGCATA-CC-CATTTGG 1 TCTGCTAAATATTTAGCATACCCACATTGGG 9938737 TCTGCTAA 1 TCTGCTAA 9938745 CCTGATTTTC Statistics Matches: 63, Mismatches: 5, Indels: 2 0.90 0.07 0.03 Matches are distributed among these distances: 29 12 0.19 30 2 0.03 31 49 0.78 ACGTcount: A:0.27, C:0.22, G:0.15, T:0.35 Consensus pattern (31 bp): TCTGCTAAATATTTAGCATACCCACATTGGG Left flanking sequence: Indices 9938146 -- 9938645 TTCTTTGCACTTCAGAAGACTGGCAGCAAGCAGTGTGAGTACCAGTGGTGTGCGGTAAATCTCAA AATTTGCCGAGCTAAGCAAATTCAGCAAATCTGGTTTTCTAATATTTGTAGGGCACGGCGAATTC GGCAAATTCTGCAAGTTTGCCGTGCTTAACAAACTCCAAAATATTTGATTATTTTTGATGTTTTT TGGAGCACCAAAACTGCTGATTTCTAATTAAACATTAAAAATGTAATGCCAAATTTTTCATGTGT GCGGAATATTTCGAAATTTGCCGGGCTCGGCAAATTCGGCAAAATTGCCGCACGCCCTTGGTGAG CACCTAGATAAAGTGAAAAGTTAACAAAAAAACGGATGTTTTCGGATGTTTATTTTCGTGTCATA GCACTAGAGCCTCACGGCAGTACATATTTAGAAAACATAGTTCCATGTGAAAAATATTCTTAAAT AAACATTAAATTTTGAAGAAACGCTAAAAACTGGGAGTTGTCGAC Right flanking sequence: Indices 9938745 -- 9939244 CCTGATTTTCTTTTTTTCCAGTAATATCCTGTGGTCCACTTCTCAAAAAAGAAGGTGTCGTCAAA ACTCCACCGGCTGCAAATTATTTGGACGGGGACAAAGTTGTATTCTCGTGTAAACCAAAATACTA CATTCACGGAGACATTGAACGTGTGTGTAGAAACGGGACATGGTCTCCGGGATGGTGGGCGTGGT GTAGAGATCGAAATTTGGAATATGCACTGAAATGGATGACTGCTTTGTTATCAATATTTGGAATA AGTTTGATATTTGTGATATTCTTCTGCATTCTGTGGAATATTAGGAAAAAGAAACAGGCTGCACA TGCTGAAAGGTTACAACTGAAGGAACAATCTGATCGATTGAATAAATTGGAAAATGAAAGAATGT AAGATTTGCTTTGTTGTTCAGAATTTGGAAGACTATGGAAAATTTCAGATTTGGAACCTCTCCCG AAAAGACTCCGTTAATTGAAACTGACTTTCGTTCTAATTTCAATA Found at i:9940070 original size:52 final size:52 Alignment explanation
Indices: 9939969--9940070 Score: 134 Period size: 52 Copynumber: 2.0 Consensus size: 52 9939959 TCCAAAATCA * * ** 9939969 TTGACTACCTGTGCTCATTGCCTTCCTGTTCTCATTGCCTACTTGTTGCTTG 1 TTGACTACCTGTGCTCATTGCCTACCTGTTCTCACTGCCTACCCGTTGCTTG * * * * * * 9940021 TTGACTTCCTTTTCTCATTGCCTACTTTTTCTCACTGCCTACCCTTTGCT 1 TTGACTACCTGTGCTCATTGCCTACCTGTTCTCACTGCCTACCCGTTGCT 9940071 CATTGTCTAC Statistics Matches: 40, Mismatches: 10, Indels: 0 0.80 0.20 0.00 Matches are distributed among these distances: 52 40 1.00 ACGTcount: A:0.10, C:0.31, G:0.13, T:0.46 Consensus pattern (52 bp): TTGACTACCTGTGCTCATTGCCTACCTGTTCTCACTGCCTACCCGTTGCTTG Left flanking sequence: Indices 9939469 -- 9939968 TGCATGAACCAATTCTGTATGTATCTATTTTCTCATTTTATTATTTCAACCACTTTCTTATCCAG ATCTCAAAGATCTTTTTTTAAACTAATTTGTATTATTTTTTCCGTTATTTGTCAATGAATTTTTC TTCTAATTTTTTAATTTTTTAATTATTCCATGAAACAGTATCAAAGATACAACAAAACCTTAAGT CGATATGATTGCTAAGAAACAAGTTTAGACAGTATTAATAACAGAATATAGGATTTCCTCTCTGG GTCTCGCCACGAACAATTTTAAATGGATGTACCTTATGGCATAATGCAACTGTAACAATGCGCGG ATGCTTATAAAATAAATATGTATTTCGTAGACCCTGCTTGGAAACGATTGTGTGTGAATTTTCAG TTGTAAATCTCCGGATATCCTTGTCAGATTTGCACTGAAAGTTTCAAAGGGAGAACGGACAAACA CTATCACCAGTTTATTTAGGCAAATACTCATTGACTCCAAAATCA Right flanking sequence: Indices 9940071 -- 9940570 CATTGTCTACTCGTTTTCTTCATCAGTCAAGAGGAACGTACAAGGACCGTATTCCAAGAATACAA CAAAGGTACATCTACTCAATTTGTTCATTCATTCAAAGGGTATACATATTTACCATATTTCAATC TGTACACAACATTTCGGGCAACAATTAGTAGTAGCTGAGTCATGTTTTAATTTATATTAGTTTTG ATAGGACCCACAAAGGCTGGGAAACATTCATTATCCATCAACACTAATAGCAACAATAGCAACAA AAAACAACACTTAAAAATTTGAAAAAAGTGGCACAGAACGTAAAATCAATAACAATGAAATGTGC CATAAGAAACTCATTCGGAGTCGGAGTCAATCACTCGTTTTCTGACATACCAAAAAATAGATTGA CATACCAAAAAAATAGATTGACATACCAAAAAATAGATTGACATACCAAAAAATAGATTGACATA CCAAAAAATAGATTGACATACCAAAATATAGATTGACATACCAAA Found at i:9940604 original size:20 final size:20 Alignment explanation
Indices: 9940438--9940598 Score: 299 Period size: 20 Copynumber: 8.0 Consensus size: 20 9940428 ACTCGTTTTC 9940438 TGACATACCAAAAAATAGAT 1 TGACATACCAAAAAATAGAT 9940458 TGACATACCAAAAAAATAGAT 1 TGACATACC-AAAAAATAGAT 9940479 TGACATACCAAAAAATAGAT 1 TGACATACCAAAAAATAGAT 9940499 TGACATACCAAAAAATAGAT 1 TGACATACCAAAAAATAGAT 9940519 TGACATACCAAAAAATAGAT 1 TGACATACCAAAAAATAGAT * 9940539 TGACATACCAAAATATAGAT 1 TGACATACCAAAAAATAGAT 9940559 TGACATACCAAAAAATAGAT 1 TGACATACCAAAAAATAGAT * 9940579 TGACATACAAAAAAATAGAT 1 TGACATACCAAAAAATAGAT 9940599 CAACATGTTA Statistics Matches: 137, Mismatches: 3, Indels: 2 0.96 0.02 0.01 Matches are distributed among these distances: 20 117 0.85 21 20 0.15 ACGTcount: A:0.55, C:0.14, G:0.10, T:0.20 Consensus pattern (20 bp): TGACATACCAAAAAATAGAT Left flanking sequence: Indices 9939938 -- 9940437 TTTAGGCAAATACTCATTGACTCCAAAATCATTGACTACCTGTGCTCATTGCCTTCCTGTTCTCA TTGCCTACTTGTTGCTTGTTGACTTCCTTTTCTCATTGCCTACTTTTTCTCACTGCCTACCCTTT GCTCATTGTCTACTCGTTTTCTTCATCAGTCAAGAGGAACGTACAAGGACCGTATTCCAAGAATA CAACAAAGGTACATCTACTCAATTTGTTCATTCATTCAAAGGGTATACATATTTACCATATTTCA ATCTGTACACAACATTTCGGGCAACAATTAGTAGTAGCTGAGTCATGTTTTAATTTATATTAGTT TTGATAGGACCCACAAAGGCTGGGAAACATTCATTATCCATCAACACTAATAGCAACAATAGCAA CAAAAAACAACACTTAAAAATTTGAAAAAAGTGGCACAGAACGTAAAATCAATAACAATGAAATG TGCCATAAGAAACTCATTCGGAGTCGGAGTCAATCACTCGTTTTC Right flanking sequence: Indices 9940599 -- 9941098 CAACATGTTATTCATTCAATAAATACAATGCTAACCAAAATGAAGTATAATTTCCTCGAAGAAAC CAAACATTTTGGTTTTGTACGGATTCACCAAGTTGAGGCCAACGATAAGCACCATGCTCCATACA ATGAAAACTGCCATGAAGAGTACGAAAACGAAGTATAAACATCCACGAGCCTGAAAATGAAGTAG TTATAATATTGCATAATTGTTATTTAAACTCACAAAATAAAACTGCAGAGACTTCTTTTTCTTCT TCTTCTCATCTCCTTTCTTGTTTCCCTTTGACTTTTTGCTTGCTTCTGGTTCGATTCTCTTTGAT TTCTTCGGATTTCCAAGTTGGGTGTAAGCTGATTTTCCATCCGAATCAAAGTTAATGTCATCAAA TAATTTTGGAGCAAGCACTGGATTGATTGGAACCGGCCGCTCATTGTCACGTGGAGGAGAGAATG GTGAGTCATCTGCCAAAGCATTTTCCGGTGGTGGTGGAAGGGATG Found at i:9942380 original size:12 final size:11 Alignment explanation
Indices: 9942356--9942380 Score: 34 Period size: 12 Copynumber: 2.2 Consensus size: 11 9942346 ATTTTACTCC 9942356 GGGCGAGAAGA 1 GGGCGAGAAGA * 9942367 GGGCAGAGATGA 1 GGGC-GAGAAGA 9942379 GG 1 GG 9942381 CTGGCGAGTA Statistics Matches: 12, Mismatches: 1, Indels: 1 0.86 0.07 0.07 Matches are distributed among these distances: 11 4 0.33 12 8 0.67 ACGTcount: A:0.32, C:0.08, G:0.56, T:0.04 Consensus pattern (11 bp): GGGCGAGAAGA Left flanking sequence: Indices 9941856 -- 9942355 AGTGAGAAGAATTTGATTAGTTTACATCAATATAGTATAACCTATAAATATATTTTTGCAGTGAC ACCACTCCTGAACCAAAAGCGAGTACAAAGGACGCATCATCCGTGCTTATGGATCCAGAGAATGA GAACAAAAGCGGCTCTTCAAAATTGCCACTTGTGGTACTCAAACCTTTCAAAAACCAAAAGCTAA TAATTTAATTTCAGATTCGAATTCTTCTCACAATCAACACTATCCTGTTCCTGATCGTTCTCGTC TTCTGGTTCTTGACACTCTTCACTGGACTCCATTTGATCAATATCTCCTTCATTAACAATATGTT TAAGTGAACTCTTCAATAAATTGTGATTTATGGAAATAAAGTTCTTAACTTTCCCCCAACATGTA TTTACAGTTTTCCAAGATTCTTTGAAACGAAAATAAAATTAAAACAGCTCGAAAATGTATCACAT GTTAAATTACATAGATGCTGATACCATGACGGCAGATTTTACTCC Right flanking sequence: Indices 9942381 -- 9942880 CTGGCGAGTAGGATCAATCAATCTTGTACGAGAACTCGTTCCTTTCTCTTCCAACCTCGGCAATT CGGCGACACTTTCAAACCAACTTTGCCCACTTCTGTAAATGACAGCTGAAAAGTGGCCAAAGTTG GTTTAAAATTGGCACCGAATTGCAGATGTACCATTCCTTTCTCGTGACTCATATCACTTAAAATA TCAAAATGATTGCCTTGAAATCTAAGTGCATTCCTCTTTGCCTCCAATTGTAATATTCTTTCTAT GTCTCCGTCCCACTTATTCTGTATTTGAACCAGTTCTTGTGAGCTGTTTCTCATATTCAATACAT CGGTCACTGCCTTAAAGAAGGAGTATAGTCAATGGGGAAATTGTTTTAAAATGTAGTACTCGTAT TCAAACGTCCAATTATTGCAAAATAAAAACGGGAAAATCCGTTAACAGTCAGCATTTTAAGTCCG GAAAATCGTTGAAAAAGCTTTAAAAATTTACCTAGACAATTCTAG Found at i:9944941 original size:11 final size:11 Alignment explanation
Indices: 9944921--9944942 Score: 37 Period size: 11 Copynumber: 2.0 Consensus size: 11 9944911 TCTTTTCGAA * 9944921 TCACATTTATT 1 TCACAATTATT 9944932 TCACAATTATT 1 TCACAATTATT 9944943 AAATTTCAAG Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 11 10 1.00 ACGTcount: A:0.32, C:0.18, G:0.00, T:0.50 Consensus pattern (11 bp): TCACAATTATT Left flanking sequence: Indices 9944421 -- 9944920 GTTCGTGTCTTTGAGCGCAGATTCTCCCCAGTTCCATCGATCCACACATAGGTCGCCTGGATCTT TGTGGGATGCGGGCGAAGTCCCAGGAATTGATCGATGACGGCTGTTCCAAGAGGCATGCGAGTCT CGAAGTTCAAATGAGTCATTTTTAGCTGAAAGTTACTCTTTTAAATATGAAAATCTGTGGAAATA CTTACGGTTATTACAATTTGCAATCGAGGAGTGTTCTTCGAGTAGAGACAAGCTCGTAATGAATT TTTCTTCGGGCATCCACGTTAAAAAGTAACAAAATAATATTTAAAATATTGAGGAAATCTGTAGT ACACCACGTTTCAACCTTTTTTATGTATTTAAAAATTTTAATTTTTAAGGGAATATTTTTAAAAA AATTATTGAATATATCGTGAAAACTTTTAAGTTTTTTTAAAATCTAATCTAATTTTTCGATTTAC AATCTAAAAAAAGTATCCAAAAAAAAGTGAGTGATTCTTTTCGAA Right flanking sequence: Indices 9944943 -- 9945442 AAATTTCAAGGTAAGGTTATTTCTATTCAGGTTCAAAAAATCTTTAAACGTTGTGAGAAGTTGGC AATACCGGCGTCAAAATGTAGGCATAAGAAGGCACATAGGCATGTAGGCAAGTAGGCATGCACGT AGGCATGTGGAAAGAAAGTTTGGAAAAAAACACTTTTTTGGACGTTTCGGAACCGTTCGTTTTAC CCAAAAATATACAACTTATCAGAAAACCGTCAGTGGGATATTTGACAATTTTAACTGACATACTT ACAAAACTTAGAGCTGAGCATGAAATTTTGGCAGCGCCCAAGTACTTGTAGTTTTAAACCTAGTC ACATACTTTTTGTTTTCAGATGATCAAGTCGATGAGATCGAATCTAAATAAGAAGAAGAAGCCTT CGGAAAATTTGCGTATGAACGAAGTGAACGGAAGCAGCCAAGCAAACCAACATCAGCTATAAAGA AGTCAGGAAATAGTAGTGAAGCAAGAAAAGATAAAGGAAAGAAGA Found at i:9945076 original size:12 final size:12 Alignment explanation
Indices: 9945055--9945079 Score: 43 Period size: 12 Copynumber: 2.1 Consensus size: 12 9945045 AGGCATGTAG 9945055 GCAAGTAGGCAT 1 GCAAGTAGGCAT * 9945067 GCACGTAGGCAT 1 GCAAGTAGGCAT 9945079 G 1 G 9945080 TGGAAAGAAA Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 12 12 1.00 ACGTcount: A:0.28, C:0.20, G:0.36, T:0.16 Consensus pattern (12 bp): GCAAGTAGGCAT Left flanking sequence: Indices 9944555 -- 9945054 GTTCAAATGAGTCATTTTTAGCTGAAAGTTACTCTTTTAAATATGAAAATCTGTGGAAATACTTA CGGTTATTACAATTTGCAATCGAGGAGTGTTCTTCGAGTAGAGACAAGCTCGTAATGAATTTTTC TTCGGGCATCCACGTTAAAAAGTAACAAAATAATATTTAAAATATTGAGGAAATCTGTAGTACAC CACGTTTCAACCTTTTTTATGTATTTAAAAATTTTAATTTTTAAGGGAATATTTTTAAAAAAATT ATTGAATATATCGTGAAAACTTTTAAGTTTTTTTAAAATCTAATCTAATTTTTCGATTTACAATC TAAAAAAAGTATCCAAAAAAAAGTGAGTGATTCTTTTCGAATCACATTTATTTCACAATTATTAA ATTTCAAGGTAAGGTTATTTCTATTCAGGTTCAAAAAATCTTTAAACGTTGTGAGAAGTTGGCAA TACCGGCGTCAAAATGTAGGCATAAGAAGGCACATAGGCATGTAG Right flanking sequence: Indices 9945080 -- 9945579 TGGAAAGAAAGTTTGGAAAAAAACACTTTTTTGGACGTTTCGGAACCGTTCGTTTTACCCAAAAA TATACAACTTATCAGAAAACCGTCAGTGGGATATTTGACAATTTTAACTGACATACTTACAAAAC TTAGAGCTGAGCATGAAATTTTGGCAGCGCCCAAGTACTTGTAGTTTTAAACCTAGTCACATACT TTTTGTTTTCAGATGATCAAGTCGATGAGATCGAATCTAAATAAGAAGAAGAAGCCTTCGGAAAA TTTGCGTATGAACGAAGTGAACGGAAGCAGCCAAGCAAACCAACATCAGCTATAAAGAAGTCAGG AAATAGTAGTGAAGCAAGAAAAGATAAAGGAAAGAAGACAGGAAAAGGATGTCGAGAACAAGGAA GTGATGTTTTGAGTAAGAAGGATGAAAAGAAGAATGGATCAAAGGAGCAATGGTCGTGCGATGGA ACAGCCAAGAAGATGGTCGCCAATGGATTCTTCAGTACGGTTTTT Found at i:9949404 original size:31 final size:31 Alignment explanation
Indices: 9949366--9949432 Score: 127 Period size: 31 Copynumber: 2.2 Consensus size: 31 9949356 AAAAATATTT * 9949366 ATACCCATCTTGGGTCTGCTAAATATTTAGC 1 ATACCCATCTTGGGTCTGCTAAATATTTAGA 9949397 ATACCCATCTTGGGTCTGCTAAATATTTAGA 1 ATACCCATCTTGGGTCTGCTAAATATTTAGA 9949428 ATACC 1 ATACC 9949433 AATGCTTTAA Statistics Matches: 35, Mismatches: 1, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 31 35 1.00 ACGTcount: A:0.28, C:0.22, G:0.15, T:0.34 Consensus pattern (31 bp): ATACCCATCTTGGGTCTGCTAAATATTTAGA Left flanking sequence: Indices 9948866 -- 9949365 TGGTCTCATAAAATCTCCATAACAGCAAAGTTCTTCTGTTATTGGTGATCGTAAAAGAGGATTTT CCATAAATTTCTTACAGAACTTCCACGTCATAAAATAACAACTAAAACATTTAATAATTATCGAT TGATTATTTGAGTATTTAACCTATCAGTTAAAACCATTTCATCTTCCATAATAGCACCATCTTTT CTCATTTCCTCAATTGTCGGTTTTTGAAGAACTCTCTTTAATTTTCTGGTTTTCTTATCCATTAC AAAAACTCCATGCTGTGTTCCAACCTGTTAGATATGTTATGGGGACGCAGAAAAGGTCGCATTTT GAAGTCAAAGTGCAATCGCGCTCCAACGCCATCCACCCCCATTACTTGGATCTCGTTAGGTAGGC GGCAGACTTATTAAATCGATTTTTTAATTCCAAAATAATGTTTTAATTTAAATTATATTTTTTCA TCAAAATAATTGAAATTGGCAAAAATAATGGAAAAAAAAATATTT Right flanking sequence: Indices 9949433 -- 9949932 AATGCTTTAATTTAATTTATATTTTTTTCATCAAAATGAGTGATAATAAAAAACGTTTGAATTTT GGGAAGGATCCTGCCCAGCGTTTAGCGTTAGAGCGCGATTGCACTGTGGTTTCAAGATGCGAATT TTCTGCGTTTGTATAATATTCGAACTTGAAGATTTCTACTCACTTCTAAAGAAGATTTATGTGCA AATACGATAATATCAACGTTAGATTTCACTTTCTCCGCATTTTCCATATTTTCAATAACGTCAGA AGCCGTAATCATTATTCCGCCAGTTGAAGGTAACTTTTCAAGAAGATCATTTCTAGATACAGATA AAGATTTTAAATAATAGTAGATATTACATACTTATAAATTTCTAATTTAGTTTCTAAAATACTTT TGCAATTTGGCAGTGTTCCAAAAGCTTTTCCATATGCTGAGAGATGAGGCATTCGTTGAGAAAGA CCACCCGAATGTAATAGTAGAACCTTAAATTTATGCGAATTCCTA Found at i:9953457 original size:12 final size:13 Alignment explanation
Indices: 9953438--9953465 Score: 47 Period size: 13 Copynumber: 2.1 Consensus size: 13 9953428 CTGAGCATAT 9953438 ATATATATTTTTTA 1 ATATATA-TTTTTA 9953452 ATATATATTTTTA 1 ATATATATTTTTA 9953465 A 1 A 9953466 AAAATAAAAT Statistics Matches: 14, Mismatches: 0, Indels: 1 0.93 0.00 0.07 Matches are distributed among these distances: 13 7 0.50 14 7 0.50 ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61 Consensus pattern (13 bp): ATATATATTTTTA Left flanking sequence: Indices 9952938 -- 9953437 GTTGTCGGCACACCATTTTGCAGAATATTTGTGTGTTCTCCATTGAATATAGACGTTTAAGAAAG TGAGATGATCCGATTCGGGAACTTGGAACTTTTCTTTCTTGGCATCAGCTTCTTCTTCTCGTCCT TTTGGTCTGAAGAAAATTGCGGGCACTGACAACATCGAAACAATCGTCAGAACTTCATCACTGCA TCCCATTTCAGCCGACATAATGAGCATTTTCGACAGAGTTGGATCTAGTGGGAATTCAACCATTT TTCGTCCCATTGGCGTGAGCTGTCCAGTGTTATCGAGAGCTCCAAGAGTCCAAAGTTGATACATT GAATTCAGCATATTGTCCTGTGGAGGTGCATCCATGAAGTGAAATTTCAAAAGATCATCCACTCC GAGAGACTTTAAAAGAAGCACTACATTGGCGAGATTGGTTCTTTGAATTTCAGGTACAGTACTCT TCTGAAAAATAAATTTGTTTTTATTTGAAACAGGGCTGAGCATAT Right flanking sequence: Indices 9953466 -- 9953965 AAAATAAAATTAAAAATTTGTCGTTTTCGATATTTTTCCCATGAAATTTTTAGCATTCGTCGCTC ACTCCAGATTTGTGAGATTCACCTCAAACTTACCAAAAGCTCATCTTTAAATTGTCTTTCAGTAT ACAAACGATAACACTGTCCTGGTCCAGTACGTCCGGCACGACCAGTTCGTTGATTCGCTGATGCT TGTGACACTGGGAAGATCGATAGAGCATCCATACCGATTCTTGGATTGTACACCTTCATCTTACA GAAACCCGGATCAATTACAAATAGAATTCCGTCGACAGTGAGCGATGTCTCTGCAATATTTGTAG CCACAATTGCTTTCCGCATTCCACCGGGTGCTCTTTGGAAAATCTTGGCTTGTAAGTCACTTGGA AGCTGGGAATAGATTGGTAGAACAGCAAGTGGAGGAGCTTCATCAAGTTCACCAAGCTTCTCTTT GATCATTTCACAAGTGCACTCAATATCTTCTTGTCCTGGCATGAA Found at i:9956183 original size:10 final size:11 Alignment explanation
Indices: 9956160--9956186 Score: 54 Period size: 11 Copynumber: 2.5 Consensus size: 11 9956150 AAGGAAATCG 9956160 AAAATAAATAA 1 AAAATAAATAA 9956171 AAAATAAATAA 1 AAAATAAATAA 9956182 AAAAT 1 AAAAT 9956187 GAGAGAGCGA Statistics Matches: 16, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 11 16 1.00 ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19 Consensus pattern (11 bp): AAAATAAATAA Left flanking sequence: Indices 9955660 -- 9956159 TCTTCTACTACTCGGCTCTCTTCGTTCTGATCTGTCACGGTCTCGTCTGCGATCATCATCCCGAC TTTTGTATTTCATTCCACGGTCGTCACGATCTCGATGCTTCTCATGAACTCTGAAATCATCAATT TACTTCGCTAATTTAATGTTTGAATCACTTTTCAATTCCTTTTCGAACCGATTCCGTGACACCTC GATCGTCATCATCCTCAAGACGTTTTCTGGCGTGTTCCCGCTTTGTAGACGCCAATCTATCGAGC CCAAGCAAGCTTCTGCAATTTAAATTGTTTTTATTTGAAGAAAATTAAAGTATATATTTAGTTAC TCACTTCCCGGATGGTTCGGTTGGTTTTGAATCTCCCTCTACTTTTTTCTTTTTAATAACCAATC CACCAAATGTGTCACTGGTTCCTTCGAGGCGGCCATCTGCCCGTTTATCCGACATTTACTAAAAA ATAAAGAATTTAAGAAAAACTAATTTAATTTCGAAAAGGAAATCG Right flanking sequence: Indices 9956187 -- 9956686 GAGAGAGCGAGAGAGAACGCATTATGAAAAGAGACTCAGACTTTTGTGTCTCGATAGAGCGCTCT TTCATAAAAACATTTTTCGCGAATTTTTTGTTTTTTCTTCAATTTTCTCAACACTCTTTCTCTCT TGTTGCATCTTTTTCTTTTCTTTTCTCTCATTAAAGGTTTCCCGGAGGTCTCTTCAAACAAAAAA TAGCCTATAAATCAGTAGAAAATCACAATCTACTTCAATGCCACCAGTTTTCACTATTGAATCCG AATTTTTGATGTTCTTCAAATTTCCCTCTGTATCATCAACCACCGATACCCACTTAAACGGTTCA ATTTCTATAGATTTGTTTGTTAACTCAAGCGCTTGAGAACCCCGGAAGCAACAGATCGGAGAGCT GAAGTGTTGAAAGTTGTTTCGAGAGAGTGGATTGCTTAGGCCCTAGCTTAAAATAAACTCAATAT ATTTAGAATTCAAATTGTTATTTCATATCAAATCATACGTTTACT Found at i:9958500 original size:31 final size:31 Alignment explanation
Indices: 9958462--9958581 Score: 184 Period size: 31 Copynumber: 3.9 Consensus size: 31 9958452 ACCAATTGCG ** * 9958462 TATGCTAAATAGCTAGCAGACCCAAGGTGGC 1 TATGCTAAATATTTAGCAGACCCAAGGTGGA * * * 9958493 TATGCTAAATATTTAGCAGACCCAACGTTGG 1 TATGCTAAATATTTAGCAGACCCAAGGTGGA * 9958524 TATGCTAAATATTTAGCAGACCCAATGTGGA 1 TATGCTAAATATTTAGCAGACCCAAGGTGGA * 9958555 TATGCTAAATATTTCGCAGACCCAAGG 1 TATGCTAAATATTTAGCAGACCCAAGG 9958582 GTGGTAGGGC Statistics Matches: 79, Mismatches: 10, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 31 79 1.00 ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26 Consensus pattern (31 bp): TATGCTAAATATTTAGCAGACCCAAGGTGGA Left flanking sequence: Indices 9957962 -- 9958461 AGTTGCCGAATTTTACTCGGAAGCACAAAAAATGATGTCTAAGGATATTGTTCGAGGGCTATGGG ACAAAGATTGGAGTGCCATCGTTAGTGGAAAAAATCTCGCCTACCAAGCACTCGCCCAGTATCAT CAATCAGAAGTGTGCGGTGAGGCTCGTCAAATAGGAGAACAGCTTTCTCGGCTTGCTGAGTCGTT GAAATTATTCGACACTGCTCAAAAATATCTTCCAAGAGATATTACTGGAATTTGGGATATTTATC CATCTGTCAGCAAAGCTCATGCTGCTGCTAAGAAGGATAACGATTTTATAGTAAGTTTAAGGCCA CGTTGGCTCAAAGTGGCCCGAAAATATCGAATTTCATTACAAAGTTTTTCAAAATTTCGCGAAAA TACCTTTTTCTTTAAGCTAAAATCTCCAATTTTGCCATTTTTTTTGTGCCACAGCTGCCGGAAAT TGATTTTGCCACGTGTTCAGACAAATAATAGGCAGACCAATTGCG Right flanking sequence: Indices 9958582 -- 9959081 GTGGTAGGGCTGAAAACATGATTTTTCAAAAAATGGGCCGATTTTGCGTGTTTTGAGGGAAAATT TAGGCTTTTTGTGTATGCTAAATATTTAGCATACCCATTTTGAGTCTGCTAAATCTTTAGCATAG CAACCTTGGGTCTGCCAAATATTTAGCATACCCACTTTGGGTCTGCTAAATATTTGGCATACTGA CAGAATTGGAGATTTTAGCAAAAATTAAGCCTTTTTTTGAAATTTTGAACAGTCATAGACTAAAT TTTTTAATGTTTGAAATCCTTTATGAAGTTCTATTTTTAGGGTCATTTCGAGTACATTACAATTT CAATATTTCAAAATAAAATTTTGAATTTTCAGTACCATGAAAAAGTTTCCGATTTCCGTACACTT CCAACACTACCAAAAGCCGTTCTTGCCAAACCTACTCCAATGCAGACTCCAATGACTCCAAGCTT CAGAGGTTAGTCTATCTCCAATGTGAATATTAAATACCGTATTTC Found at i:9958534 original size:62 final size:62 Alignment explanation
Indices: 9958461--9958587 Score: 205 Period size: 62 Copynumber: 2.0 Consensus size: 62 9958451 GACCAATTGC * * 9958461 GTATGCTAAATAGCTAGCAGACCCAAGGTGGCTATGCTAAATATTTAGCAGACCCAACGTTG 1 GTATGCTAAATAGCTAGCAGACCCAAGGTGGATATGCTAAATATTTAGCAGACCCAACGGTG ** * * * 9958523 GTATGCTAAATATTTAGCAGACCCAATGTGGATATGCTAAATATTTCGCAGACCCAAGGGTG 1 GTATGCTAAATAGCTAGCAGACCCAAGGTGGATATGCTAAATATTTAGCAGACCCAACGGTG 9958585 GTA 1 GTA 9958588 GGGCTGAAAA Statistics Matches: 58, Mismatches: 7, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 62 58 1.00 ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26 Consensus pattern (62 bp): GTATGCTAAATAGCTAGCAGACCCAAGGTGGATATGCTAAATATTTAGCAGACCCAACGGTG Left flanking sequence: Indices 9957961 -- 9958460 AAGTTGCCGAATTTTACTCGGAAGCACAAAAAATGATGTCTAAGGATATTGTTCGAGGGCTATGG GACAAAGATTGGAGTGCCATCGTTAGTGGAAAAAATCTCGCCTACCAAGCACTCGCCCAGTATCA TCAATCAGAAGTGTGCGGTGAGGCTCGTCAAATAGGAGAACAGCTTTCTCGGCTTGCTGAGTCGT TGAAATTATTCGACACTGCTCAAAAATATCTTCCAAGAGATATTACTGGAATTTGGGATATTTAT CCATCTGTCAGCAAAGCTCATGCTGCTGCTAAGAAGGATAACGATTTTATAGTAAGTTTAAGGCC ACGTTGGCTCAAAGTGGCCCGAAAATATCGAATTTCATTACAAAGTTTTTCAAAATTTCGCGAAA ATACCTTTTTCTTTAAGCTAAAATCTCCAATTTTGCCATTTTTTTTGTGCCACAGCTGCCGGAAA TTGATTTTGCCACGTGTTCAGACAAATAATAGGCAGACCAATTGC Right flanking sequence: Indices 9958588 -- 9959087 GGGCTGAAAACATGATTTTTCAAAAAATGGGCCGATTTTGCGTGTTTTGAGGGAAAATTTAGGCT TTTTGTGTATGCTAAATATTTAGCATACCCATTTTGAGTCTGCTAAATCTTTAGCATAGCAACCT TGGGTCTGCCAAATATTTAGCATACCCACTTTGGGTCTGCTAAATATTTGGCATACTGACAGAAT TGGAGATTTTAGCAAAAATTAAGCCTTTTTTTGAAATTTTGAACAGTCATAGACTAAATTTTTTA ATGTTTGAAATCCTTTATGAAGTTCTATTTTTAGGGTCATTTCGAGTACATTACAATTTCAATAT TTCAAAATAAAATTTTGAATTTTCAGTACCATGAAAAAGTTTCCGATTTCCGTACACTTCCAACA CTACCAAAAGCCGTTCTTGCCAAACCTACTCCAATGCAGACTCCAATGACTCCAAGCTTCAGAGG TTAGTCTATCTCCAATGTGAATATTAAATACCGTATTTCCTCTAT Found at i:9958697 original size:31 final size:31 Alignment explanation
Indices: 9958654--9958773 Score: 170 Period size: 31 Copynumber: 3.9 Consensus size: 31 9958644 ATTTAGGCTT * * * 9958654 TTTGTGTATGCTAAATATTTAGCATACCCAT 1 TTTGGGTCTGCTAAATATTTAGCATACCCAC * * * * 9958685 TTTGAGTCTGCTAAATCTTTAGCATAGCAAC 1 TTTGGGTCTGCTAAATATTTAGCATACCCAC * * 9958716 CTTGGGTCTGCCAAATATTTAGCATACCCAC 1 TTTGGGTCTGCTAAATATTTAGCATACCCAC * 9958747 TTTGGGTCTGCTAAATATTTGGCATAC 1 TTTGGGTCTGCTAAATATTTAGCATAC 9958774 TGACAGAATT Statistics Matches: 74, Mismatches: 15, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 31 74 1.00 ACGTcount: A:0.27, C:0.20, G:0.17, T:0.37 Consensus pattern (31 bp): TTTGGGTCTGCTAAATATTTAGCATACCCAC Left flanking sequence: Indices 9958154 -- 9958653 GTTGAAATTATTCGACACTGCTCAAAAATATCTTCCAAGAGATATTACTGGAATTTGGGATATTT ATCCATCTGTCAGCAAAGCTCATGCTGCTGCTAAGAAGGATAACGATTTTATAGTAAGTTTAAGG CCACGTTGGCTCAAAGTGGCCCGAAAATATCGAATTTCATTACAAAGTTTTTCAAAATTTCGCGA AAATACCTTTTTCTTTAAGCTAAAATCTCCAATTTTGCCATTTTTTTTGTGCCACAGCTGCCGGA AATTGATTTTGCCACGTGTTCAGACAAATAATAGGCAGACCAATTGCGTATGCTAAATAGCTAGC AGACCCAAGGTGGCTATGCTAAATATTTAGCAGACCCAACGTTGGTATGCTAAATATTTAGCAGA CCCAATGTGGATATGCTAAATATTTCGCAGACCCAAGGGTGGTAGGGCTGAAAACATGATTTTTC AAAAAATGGGCCGATTTTGCGTGTTTTGAGGGAAAATTTAGGCTT Right flanking sequence: Indices 9958774 -- 9959273 TGACAGAATTGGAGATTTTAGCAAAAATTAAGCCTTTTTTTGAAATTTTGAACAGTCATAGACTA AATTTTTTAATGTTTGAAATCCTTTATGAAGTTCTATTTTTAGGGTCATTTCGAGTACATTACAA TTTCAATATTTCAAAATAAAATTTTGAATTTTCAGTACCATGAAAAAGTTTCCGATTTCCGTACA CTTCCAACACTACCAAAAGCCGTTCTTGCCAAACCTACTCCAATGCAGACTCCAATGACTCCAAG CTTCAGAGGTTAGTCTATCTCCAATGTGAATATTAAATACCGTATTTCCTCTATTAGTTAGGCAC CTCTATTAGTTTTGCACTCTCTATTAGTTTTGCACCTCTTAATTTGTTACTTATTGCTAAGAATT CAAAATTTGCAGATTAAATTCGTTCTAAAAATTAGGAAAACTATTACAGACTTGGTATAACAAGT CAAAATTGACAAAATATAAGTACAACTCGGACAATTTTTGCGTAT Found at i:9959122 original size:18 final size:17 Alignment explanation
Indices: 9959081--9959137 Score: 91 Period size: 17 Copynumber: 3.3 Consensus size: 17 9959071 TACCGTATTT ** 9959081 CCTCTATTAGTTAGGCA 1 CCTCTATTAGTTTTGCA 9959098 CCTCTATTAGTTTTGCA 1 CCTCTATTAGTTTTGCA 9959115 CTCTCTATTAGTTTTGCA 1 C-CTCTATTAGTTTTGCA 9959133 CCTCT 1 CCTCT 9959138 TAATTTGTTA Statistics Matches: 37, Mismatches: 2, Indels: 2 0.90 0.05 0.05 Matches are distributed among these distances: 17 20 0.54 18 17 0.46 ACGTcount: A:0.18, C:0.26, G:0.12, T:0.44 Consensus pattern (17 bp): CCTCTATTAGTTTTGCA Left flanking sequence: Indices 9958581 -- 9959080 GGTGGTAGGGCTGAAAACATGATTTTTCAAAAAATGGGCCGATTTTGCGTGTTTTGAGGGAAAAT TTAGGCTTTTTGTGTATGCTAAATATTTAGCATACCCATTTTGAGTCTGCTAAATCTTTAGCATA GCAACCTTGGGTCTGCCAAATATTTAGCATACCCACTTTGGGTCTGCTAAATATTTGGCATACTG ACAGAATTGGAGATTTTAGCAAAAATTAAGCCTTTTTTTGAAATTTTGAACAGTCATAGACTAAA TTTTTTAATGTTTGAAATCCTTTATGAAGTTCTATTTTTAGGGTCATTTCGAGTACATTACAATT TCAATATTTCAAAATAAAATTTTGAATTTTCAGTACCATGAAAAAGTTTCCGATTTCCGTACACT TCCAACACTACCAAAAGCCGTTCTTGCCAAACCTACTCCAATGCAGACTCCAATGACTCCAAGCT TCAGAGGTTAGTCTATCTCCAATGTGAATATTAAATACCGTATTT Right flanking sequence: Indices 9959138 -- 9959637 TAATTTGTTACTTATTGCTAAGAATTCAAAATTTGCAGATTAAATTCGTTCTAAAAATTAGGAAA ACTATTACAGACTTGGTATAACAAGTCAAAATTGACAAAATATAAGTACAACTCGGACAATTTTT GCGTATCAGTCGTAAAATTCGTCCATTTTGGTTCAGAAGTTGTAATTGAAATTGATGATATTATG TCATAACTTGATTGATTGATTTGATTTATTTAACATAACTAATGCAATTTACAACTGTACAATTG AATTTTGAAAAACTTAATGGAAAACATGAGAAAAAACCTGTTCGAAAATTAGTTTTGCACCCTCT ATTAGTTTTGCATCAAATTAGGTGTCCGAAAATTAGTTTTGCATGCCTTACTAAAAGAGGAAATA CAGTATCTAATTTCAGATATGTTCGCTGTTCTTGTCCCAGTTCAAGTTCACAATGCAATGCAATC ATATGACGCAAGAAAAGCTGAACTTGTTAATATGGAGACTGTTAG Found at i:9961394 original size:13 final size:13 Alignment explanation
Indices: 9961370--9961395 Score: 38 Period size: 13 Copynumber: 2.0 Consensus size: 13 9961360 GCATGTTTTT * 9961370 TTTTAAATTAACA 1 TTTTAAAATAACA * 9961383 TTTTAATATAACA 1 TTTTAAAATAACA 9961396 AAACTATAAT Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 13 11 1.00 ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46 Consensus pattern (13 bp): TTTTAAAATAACA Left flanking sequence: Indices 9960870 -- 9961369 TTTAAAAGTTTTTTTCTTAATGATTTTTCATCACATTTTTTTTGTTAAAAAACTATATTCAAACA AAACTGAAAAAAAAAACGCGAATACTTTAATCTTTGAGTAGCTAGTAGAAAAACTATTTTGAAGA CATAATCAAAAAGCTGTTTCAATAAAAGTTGTCGTTTCGAGACCGGGTACCGTATTTTTGAGACG AAAATCGCAAAGTTTTGCATCTGGGTAATAAGTTGATCAAATTTTTGAAATCAAATCTTCAGATG ATGGTACGTATTGAAAATTAATTTTTATAAGTGGGTTCCGTTGTTCGTCGTAATTTTGTTAAAGT TAGCTGCAACATGTATTTGGTATTTTATATATTTTTTAGAATTTCGATGTTGTGCCTTGTATTAG ATTTTCGTGGTTTCAGGTCAAGCTGCGAAAGCTGTTGTTGATGGTGTAAATTCGCTCGTTTCTTC ATATCTTACAGGCGGTCCGTTTTTGTTCTGCACGAGCATGTTTTT Right flanking sequence: Indices 9961396 -- 9961895 AAACTATAATATTCGCCAGGAATTAGTTATTTTTTAAATTTCAGGAACCAACGCAGCTCAATCAC CAGCAAATGCTCCACCAAGACCACCTCCACCACGTCCAGCTGCTCCAAGTGTAGAATCTCCAATT CCACCACCAAGAACTCAACAATCAATGCAAGGTAATAAATTTGTTATAGCGTTTTTCTAAAAATT GACGGAGGAGTTAACGGAAATTATTTTTGGCAATTATACATTATACACCTGCGCCATGTTTTTTT CCAATATTTTTTATTAAAAATTAGTGCCAAAAAATAGAAATTCATTTTATTTACCTGAAAATAAC ATTAATTTTATCTGGAATATCGGAGAAAGTGTTCGAAAAGGGCCAATTTTGATCACTTTCTCCGA TTTTTCAGAAAAAATTAATGTTATTTTCAAATAAATCGAGAAATTTTCTATACTTTGACGCCAAT TTTAAATAACAATTTTTTAGAACAACATGGAGAAATAGTGTAGAA Found at i:9961874 original size:13 final size:13 Alignment explanation
Indices: 9961847--9961875 Score: 37 Period size: 13 Copynumber: 2.2 Consensus size: 13 9961837 ACTTTGACGC * 9961847 CAATTTTAAATAA 1 CAATTTTAAAGAA ** 9961860 CAATTTTTTAGAA 1 CAATTTTAAAGAA 9961873 CAA 1 CAA 9961876 CATGGAGAAA Statistics Matches: 13, Mismatches: 3, Indels: 0 0.81 0.19 0.00 Matches are distributed among these distances: 13 13 1.00 ACGTcount: A:0.48, C:0.10, G:0.03, T:0.38 Consensus pattern (13 bp): CAATTTTAAAGAA Left flanking sequence: Indices 9961347 -- 9961846 TTGTTCTGCACGAGCATGTTTTTTTTTAAATTAACATTTTAATATAACAAAACTATAATATTCGC CAGGAATTAGTTATTTTTTAAATTTCAGGAACCAACGCAGCTCAATCACCAGCAAATGCTCCACC AAGACCACCTCCACCACGTCCAGCTGCTCCAAGTGTAGAATCTCCAATTCCACCACCAAGAACTC AACAATCAATGCAAGGTAATAAATTTGTTATAGCGTTTTTCTAAAAATTGACGGAGGAGTTAACG GAAATTATTTTTGGCAATTATACATTATACACCTGCGCCATGTTTTTTTCCAATATTTTTTATTA AAAATTAGTGCCAAAAAATAGAAATTCATTTTATTTACCTGAAAATAACATTAATTTTATCTGGA ATATCGGAGAAAGTGTTCGAAAAGGGCCAATTTTGATCACTTTCTCCGATTTTTCAGAAAAAATT AATGTTATTTTCAAATAAATCGAGAAATTTTCTATACTTTGACGC Right flanking sequence: Indices 9961876 -- 9962375 CATGGAGAAATAGTGTAGAACTTCCAAAAAATAATTGCCGCTCACTCATGAATTGAACTAACCCA TTTTTGTCTGAATCTGTAAGCATGTCCTCTGTATTCAGCCACTCCTGGTGCACCACCACAGTATA ATCCGTATCAGCAGCAGCAACAACCACAAATGCAACAATTCCAACAGCATCCTGGATATTATCAA CAGCCAATGCCATACGGTGTGTCTTGTGTTACATTATTTTGTCCGTAAATATTTAGCATACTCAA TTGGCCTGCTAATTGTTTAGCATACACAAAACGCCTAAATTTTCACTCGAAACACGCAAAATTGG CTGAAAAATCATTTTTTCAGCTTTACCCACTTTGGGTCTGCTAAATATTTAGCATACCCACCTTG GGTCTGCTAAATATTTAGCATACCCATCTTGGGTCTGCTAAATATTTAGCATACACAAAAAGCCT AAATTTTCACTCGAAACACGCAAAATTGGCTGAAAAATCATTTTT Found at i:9962267 original size:31 final size:31 Alignment explanation
Indices: 9962224--9962319 Score: 178 Period size: 31 Copynumber: 3.1 Consensus size: 31 9962214 TTTTCAGCTT * 9962224 TACCCACTTTGGGTCTGCTAAATATTTAGCA 1 TACCCACCTTGGGTCTGCTAAATATTTAGCA 9962255 TACCCACCTTGGGTCTGCTAAATATTTAGCA 1 TACCCACCTTGGGTCTGCTAAATATTTAGCA * 9962286 TACCCATCTTGGGTCTGCTAAATATTTAGCA 1 TACCCACCTTGGGTCTGCTAAATATTTAGCA 9962317 TAC 1 TAC 9962320 ACAAAAAGCC Statistics Matches: 63, Mismatches: 2, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 31 63 1.00 ACGTcount: A:0.26, C:0.24, G:0.16, T:0.34 Consensus pattern (31 bp): TACCCACCTTGGGTCTGCTAAATATTTAGCA Left flanking sequence: Indices 9961724 -- 9962223 AATTTTATCTGGAATATCGGAGAAAGTGTTCGAAAAGGGCCAATTTTGATCACTTTCTCCGATTT TTCAGAAAAAATTAATGTTATTTTCAAATAAATCGAGAAATTTTCTATACTTTGACGCCAATTTT AAATAACAATTTTTTAGAACAACATGGAGAAATAGTGTAGAACTTCCAAAAAATAATTGCCGCTC ACTCATGAATTGAACTAACCCATTTTTGTCTGAATCTGTAAGCATGTCCTCTGTATTCAGCCACT CCTGGTGCACCACCACAGTATAATCCGTATCAGCAGCAGCAACAACCACAAATGCAACAATTCCA ACAGCATCCTGGATATTATCAACAGCCAATGCCATACGGTGTGTCTTGTGTTACATTATTTTGTC CGTAAATATTTAGCATACTCAATTGGCCTGCTAATTGTTTAGCATACACAAAACGCCTAAATTTT CACTCGAAACACGCAAAATTGGCTGAAAAATCATTTTTTCAGCTT Right flanking sequence: Indices 9962320 -- 9962819 ACAAAAAGCCTAAATTTTCACTCGAAACACGCAAAATTGGCTGAAAAATCATTTTTTCAGCTTTA CCCACATTGGGTCTGCTAAATATTTAGCATACCCATCTTGGGTCTGCTAAATATTTAGCATACAC AAAAAGCCTAAATTTTCACTCGAAACACGCAAAATCGGCCCATTTTTTGAAAAATCATGTTTTCA GCTTTACCCACCTGGGTCTGCTAATTATTTAGCAGACCAAGGATGGTAAAAAAAAGAAAATTTTG AATTTAACACTTATTTAACTAATAACTTGATTATAAAATGCCACAACTTTTACCAATAATTCAAA AATTTCAGGCCAACCGCAACCAATGTTCCAACCACAGTACCAACCGACATTTGCGGCTCCTTATC CAACATTCCCTGGCGCCTTTCCTTCATACCAACAACAATGGCCTCAACAGCAACAGCAAGGAGGA TTTCCACCAAATCCACAATTTGGACAACAAAATCAGCAGCAAGGA Found at