TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_II Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 15279311 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:476057 original size:20 final size:20 Alignment explanation
Indices: 476029--476069 Score: 52 Period size: 20 Copynumber: 2.0 Consensus size: 20 476019 TCCGCTTGAG 476029 ACTGATTTT-TACAATGTTTT 1 ACTGATTTTATACAA-GTTTT * * 476049 ACTGGTTTTATGCAAGTTTT 1 ACTGATTTTATACAAGTTTT 476069 A 1 A 476070 ACTTCAAAAT Statistics Matches: 18, Mismatches: 2, Indels: 2 0.82 0.09 0.09 Matches are distributed among these distances: 20 14 0.78 21 4 0.22 ACGTcount: A:0.24, C:0.10, G:0.15, T:0.51 Consensus pattern (20 bp): ACTGATTTTATACAAGTTTT Left flanking sequence: Indices 475529 -- 476028 GGCAGATGATCTCCGGCGTCGGAATCTGGAAAAAAATTTTAATTTCAGGGTTTTCAGATGTTCCC CCATACCATCATCGGAATAGTCATCTCTGAGATCTTCATCGTCACTTCCTGGGAAGCTGAGACCT TCCAGGCCGTCCTCGTCATCGTCGATAAGCTGCAGCTTCTCGACCTGCTCGATTGGTTCCTCCTC ATGAGCCTTTTTCGCCGATTTCTTCACCTTTTTCACTAGCTTCTTCTTCTTTGGAGTCACTGCCT CGGTTTCCTAAAAAATTGGAGCTTCGTCGTGAATGTTTAGTGCAAAAACTCACTGCAACAGGTCT TTTAACGGCTTTCTTAACTTCTGGCTTCTCTGTAGCAGCTTTTGAGGCAGCGGACACCTTCTTCT TCTTGACAATTGCCATTTTACCTGAAAAATACTTCTTAAAGTTTGAAAAAAACGCAGAAAATAGT GACAGAATGGCGAGAAAAGTGAAAACCCCAATTCCTCCGCTTGAG Right flanking sequence: Indices 476070 -- 476569 ACTTCAAAATTTAATTTTTCACATATTTTCAAAATAAAACACCACAAAAAACTGACGAAAAGCAA CGGAAAAGCCGAAAAATCGATCGCCTAAATTCGAAAGAAATTGCATTGAAAATTGCACAGGCGTG CGGTAGAGCGCGCTTGCCGACGATGGCCGTGTGGGGGTTTCTAGACCGCGAACTCTGGCTGATGC CTCAAAGGCTGATGGCGGCTTCACGTCGAAGAAGGAATTGCCACTCGTCGTGACTAAAGAAGAAA CAGCGCCGACAATAGCCAAAACAGATGCAGGAAATGCAGAATCCACAGTTACAGAAGTCAAAAAA TATGCGTTAACAATATAACACGTATTTGGAGCTCGAACAACGCTGACATGCCAAAATGTATTGGT AGGGAAGTTTTTGAAAGAAAAAGAGTGTGAATATATGTCAATTAACTTTATGCTCGGCAATTTTG ACAATTGCCAAAAATATCAGCGTTTGGCAATGTCCGTCGTTGCCA Found at i:483345 original size:64 final size:62 Alignment explanation
Indices: 483273--483488 Score: 268 Period size: 64 Copynumber: 3.4 Consensus size: 62 483263 GAAAATATTA * ** * * * * * * 483273 AAAATTCGATTTAAAATACCCAAATTATTGGAATTCGAAATGGGTCTGCTAGACTACAAATTAC 1 AAATTTCGATTTAGCAGACCCAAATGATTTGAAGT-G-ATTGGGTCTGCTAGACTACAAACTAC * * * * 483337 AAATTTCGATTTAGCAGACCCAAGTGGTTTTGAAGAAGTTTGGGTCTGCTAGACTACAAACTAC 1 AAATTTCGATTTAGCAGACCCAAAT-GATTTGAAG-TGATTGGGTCTGCTAGACTACAAACTAC * * * 483401 AACTTTCGATTTAGCAGACCCAAGTGATTTTGAAGTGATTGGGTCTGCTAGACTACAAACTAG 1 AAATTTCGATTTAGCAGACCCAAATGA-TTTGAAGTGATTGGGTCTGCTAGACTACAAACTAC * 483464 AAATTTCGATTTAGCAAACCCAAAT 1 AAATTTCGATTTAGCAGACCCAAAT 483489 AATAGTGATT Statistics Matches: 128, Mismatches: 21, Indels: 7 0.82 0.13 0.04 Matches are distributed among these distances: 63 48 0.38 64 74 0.58 65 6 0.05 ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30 Consensus pattern (62 bp): AAATTTCGATTTAGCAGACCCAAATGATTTGAAGTGATTGGGTCTGCTAGACTACAAACTAC Left flanking sequence: Indices 482773 -- 483272 GTTTAAGTTAATTCGGATTCGTTTGTGATCATTCGGTGTTTAAAATCAGTTTGCGCATTTCAAAG TGACATCCCCGTCGTTGAATTTTCAACGTTTTTAAAAAATATTTTCAAGATTTTTCACAACTTTT CCTGCAAAAAGTTACCTGAGATCCGGAATAAATAAGTCCTTCGCCTCCCCAACGCAGACAGGTGA CCGAAGCAGTGTGTCCACTCAAACAGCGAACTACAGTACCCTGTACGGTATCCCAAATGAAAATA TTTCCGTCTTTTCCACAAGAAGCCAGAAGCCTGCACGTCGGGTCTTTGTGCATCGGTTGCCATGC CAAACTGCAAAAATTTTATTATAAAAATTCGATTTGAAATGGAAATGTTTAGTTTTTATGTTGAA AAATTAATTTTTGGCTAATATTTGAGAGAAAAACTCGGGTTTTCTGAAGCTTTCTGTTAAAAATC ACATTTTTCCACTATGGATGATAAGTAAACTCATAGAAAATATTA Right flanking sequence: Indices 483489 -- 483988 AATAGTGATTTTCAAAAGGGTTTCAGTAAAAATACATCGTTTCAGTGGGGTTTTAATGGAAATTT TAAGAGAACATTGTAGTGATAAATACAATTTTACGGCGATTTTTTGTAGAAAACCCAAATTTTCA AGACATTTCAGTGATAAATGCGATTTTCCTGCACCTCGTGATCCATTGCTTGTGCCTTTTGAGCG TTTTTCCGATTTGCTCTCCGGTTTTCGCGTTCCAAATGCAAATTTCTCCGTTTTTGCAAGCCGAA GCGATTTTCGTAGCATCCGGTGACCAGGCGATGCAGAGAACCCAACTTTTATGGGATTTACACGT GTGGAGAGGCAACTCGAGCTCAATATCCCAGATTCGCATTGTTTGATCGCCGGAGCCCGACGCTA GACCACGTCCGTCAGGGCTGAACTGAGCAGAGATTACTGGCTCTCCGTGACCTGAAAAATATATT TAAATGCGTCAAAACGATCAAAAAATTACCTGGAATGCTAGCGGA Found at i:483473 original size:63 final size:64 Alignment explanation
Indices: 483313--483486 Score: 292 Period size: 64 Copynumber: 2.7 Consensus size: 64 483303 GAATTCGAAA * * * 483313 TGGGTCTGCTAGACTACAAATTACAAATTTCGATTTAGCAGACCCAAGTGGTTTTGAAGAAGTT 1 TGGGTCTGCTAGACTACAAACTACAAATTTCGATTTAGCAGACCCAAGTGATTTTGAAGAAGAT * * 483377 TGGGTCTGCTAGACTACAAACTACAACTTTCGATTTAGCAGACCCAAGTGATTTTGAAG-TGAT 1 TGGGTCTGCTAGACTACAAACTACAAATTTCGATTTAGCAGACCCAAGTGATTTTGAAGAAGAT * * 483440 TGGGTCTGCTAGACTACAAACTAGAAATTTCGATTTAGCAAACCCAA 1 TGGGTCTGCTAGACTACAAACTACAAATTTCGATTTAGCAGACCCAA 483487 ATAATAGTGA Statistics Matches: 102, Mismatches: 8, Indels: 1 0.92 0.07 0.01 Matches are distributed among these distances: 63 46 0.45 64 56 0.55 ACGTcount: A:0.32, C:0.18, G:0.20, T:0.29 Consensus pattern (64 bp): TGGGTCTGCTAGACTACAAACTACAAATTTCGATTTAGCAGACCCAAGTGATTTTGAAGAAGAT Left flanking sequence: Indices 482813 -- 483312 TAAAATCAGTTTGCGCATTTCAAAGTGACATCCCCGTCGTTGAATTTTCAACGTTTTTAAAAAAT ATTTTCAAGATTTTTCACAACTTTTCCTGCAAAAAGTTACCTGAGATCCGGAATAAATAAGTCCT TCGCCTCCCCAACGCAGACAGGTGACCGAAGCAGTGTGTCCACTCAAACAGCGAACTACAGTACC CTGTACGGTATCCCAAATGAAAATATTTCCGTCTTTTCCACAAGAAGCCAGAAGCCTGCACGTCG GGTCTTTGTGCATCGGTTGCCATGCCAAACTGCAAAAATTTTATTATAAAAATTCGATTTGAAAT GGAAATGTTTAGTTTTTATGTTGAAAAATTAATTTTTGGCTAATATTTGAGAGAAAAACTCGGGT TTTCTGAAGCTTTCTGTTAAAAATCACATTTTTCCACTATGGATGATAAGTAAACTCATAGAAAA TATTAAAAATTCGATTTAAAATACCCAAATTATTGGAATTCGAAA Right flanking sequence: Indices 483487 -- 483986 ATAATAGTGATTTTCAAAAGGGTTTCAGTAAAAATACATCGTTTCAGTGGGGTTTTAATGGAAAT TTTAAGAGAACATTGTAGTGATAAATACAATTTTACGGCGATTTTTTGTAGAAAACCCAAATTTT CAAGACATTTCAGTGATAAATGCGATTTTCCTGCACCTCGTGATCCATTGCTTGTGCCTTTTGAG CGTTTTTCCGATTTGCTCTCCGGTTTTCGCGTTCCAAATGCAAATTTCTCCGTTTTTGCAAGCCG AAGCGATTTTCGTAGCATCCGGTGACCAGGCGATGCAGAGAACCCAACTTTTATGGGATTTACAC GTGTGGAGAGGCAACTCGAGCTCAATATCCCAGATTCGCATTGTTTGATCGCCGGAGCCCGACGC TAGACCACGTCCGTCAGGGCTGAACTGAGCAGAGATTACTGGCTCTCCGTGACCTGAAAAATATA TTTAAATGCGTCAAAACGATCAAAAAATTACCTGGAATGCTAGCG i:485547 original size:12 final size:12 Alignment explanation
Indices: 485524--485547 Score: 34 Period size: 12 Copynumber: 2.0 Consensus size: 12 485514 GAAATGGCCG ** 485524 TCAATTTCTGAC 1 TCAATTGATGAC 485536 TCAATTGATGAC 1 TCAATTGATGAC 485548 ACGAGAAGCC Statistics Matches: 10, Mismatches: 2, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 12 10 1.00 ACGTcount: A:0.29, C:0.21, G:0.12, T:0.38 Consensus pattern (12 bp): TCAATTGATGAC Left flanking sequence: Indices 485024 -- 485523 AAAGATTTCACGCGGAATTCCGCAAAAACTAGGGCAAATCGATATTTTCCAAAAATAAGCAATAC ATTTTCAATTTTCAGCAATCGTCGACAAAACCGCCCGTTTCGCTGCAAAAAATGGAGTGGACTTT GAGAATAAAATCCGCGAAAAGGAGGCGAAAAACCCGAAATTCAACTTTCTCTCCATCACAGACCC ATACCATGCCTACTACAAAAAGATGGTCTACGATTTCTCAGAAGGCCGAGTTGAGGCTCCGAAAG TACCGCAAGCAGTGAAAGAGCACGTGAAAAAGGCTGAATTTGTGCCTTCAGCTCCACCGCCGGCC TACGAGTTCTCAGCGGATCCATCCACGATTAACGCCTATGATTTGTAAGTTTTTTAGAACTTCTA GAACTAAAATTAGATGAAAAAGCTATTTTTAACCTAAAATGAAGTGAAAACCTTATAAATTGCAG AGATTTGATCCGACTCGTTGCTCTGTTCGTTGCACGAAATGGCCG Right flanking sequence: Indices 485548 -- 486047 ACGAGAAGCCAGAAATTATCAATTCGACTTTTTGAAACCGGCTCATTGCAACTTTACATACTTCA CAAAGCTCGTTGATCAATATCAGAAGGTAAAAATCAAGAAAATCTGCGTATTTCTAAGAATTTTT AAAAAAATCTAGATTTTTCGGTTGAAAACTCAAAAAAAATCCAGCTTTTTCGGTAGAAAACTCAA AAAAAAAACATTTTGATAACTTTTTCACTATTTTCAGTTTAAAGATGGCGGAAAAGTGAGCTTTA TAACTTTTATTTGAAATTTTTAAGCTAAAAGTTGCTAAAATATCAGTTTTCAGGTTCTGGTGCCC TCTACCAACGTAGTTGCCCAACTCCAAGACGATGCTACCAACAAAAAACGTCTCATAGAAGATAT CAATTATCGTGTATCCTGGGAAAAACATCAAAAAGGTCTAAAAGATCGCGAGGAGGCAGAAGCCG AGAAAGAGCGTCAAGCCTATGCATCAATCGATTGGCATGACTTTG Found at i:485745 original size:31 final size:32 Alignment explanation
Indices: 485678--485748 Score: 121 Period size: 32 Copynumber: 2.2 Consensus size: 32 485668 AAGAATTTTT * * 485678 AAAAAAATCTAGATTTTTCGGTTGAAAACTCA 1 AAAAAAATCCAGATTTTTCGGTAGAAAACTCA * 485710 AAAAAAATCCAGCTTTTTCGGTAGAAAACTCA 1 AAAAAAATCCAGATTTTTCGGTAGAAAACTCA 485742 AAAAAAA 1 AAAAAAA 485749 AACATTTTGA Statistics Matches: 36, Mismatches: 3, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 32 36 1.00 ACGTcount: A:0.49, C:0.14, G:0.11, T:0.25 Consensus pattern (32 bp): AAAAAAATCCAGATTTTTCGGTAGAAAACTCA Left flanking sequence: Indices 485178 -- 485677 GCGAAAAACCCGAAATTCAACTTTCTCTCCATCACAGACCCATACCATGCCTACTACAAAAAGAT GGTCTACGATTTCTCAGAAGGCCGAGTTGAGGCTCCGAAAGTACCGCAAGCAGTGAAAGAGCACG TGAAAAAGGCTGAATTTGTGCCTTCAGCTCCACCGCCGGCCTACGAGTTCTCAGCGGATCCATCC ACGATTAACGCCTATGATTTGTAAGTTTTTTAGAACTTCTAGAACTAAAATTAGATGAAAAAGCT ATTTTTAACCTAAAATGAAGTGAAAACCTTATAAATTGCAGAGATTTGATCCGACTCGTTGCTCT GTTCGTTGCACGAAATGGCCGTCAATTTCTGACTCAATTGATGACACGAGAAGCCAGAAATTATC AATTCGACTTTTTGAAACCGGCTCATTGCAACTTTACATACTTCACAAAGCTCGTTGATCAATAT CAGAAGGTAAAAATCAAGAAAATCTGCGTATTTCTAAGAATTTTT Right flanking sequence: Indices 485749 -- 486248 AACATTTTGATAACTTTTTCACTATTTTCAGTTTAAAGATGGCGGAAAAGTGAGCTTTATAACTT TTATTTGAAATTTTTAAGCTAAAAGTTGCTAAAATATCAGTTTTCAGGTTCTGGTGCCCTCTACC AACGTAGTTGCCCAACTCCAAGACGATGCTACCAACAAAAAACGTCTCATAGAAGATATCAATTA TCGTGTATCCTGGGAAAAACATCAAAAAGGTCTAAAAGATCGCGAGGAGGCAGAAGCCGAGAAAG AGCGTCAAGCCTATGCATCAATCGATTGGCATGACTTTGTAGTTGTTCAGACTGTAGATTTCCAG CCAGGAGATACTTCTCAGCTTCCACCACTATGCACACCAAAGGACGTTGGAGCCCGTATTCTTTT GGAAGCGAGAAATGAAATGCAAAAGGCGGCGGCTGAAATGCAGGAAATGGATATGGAAGAGAGTG ATTCCGATGACGAAGATGCCGTTCAAGGTGCTTTTTTGGAGCATT Found at i:486540 original size:63 final size:63 Alignment explanation
Indices: 486462--486761 Score: 437 Period size: 63 Copynumber: 4.8 Consensus size: 63 486452 GTAAGATTTT * * * * 486462 TTGGGTCTGCTAAATCAAAACTTGTAGTTTGTAGTCTAGCAGACCCATTCTCTTCCAAATCAC 1 TTGGGTCTGCTAAATCGAAATTTGTAGTTTGTAGTCTAGCAGACCCAATCTCTTCCAAACCAC * * * * * 486525 TTGGGTCTGCTAAATCGAAATGTGTAGTTTGTAGTCTTGCAGACCCAAGCTCTTCAAAACAAC 1 TTGGGTCTGCTAAATCGAAATTTGTAGTTTGTAGTCTAGCAGACCCAATCTCTTCCAAACCAC * * ** * 486588 TTGGGTCTGCTAAATCGAAATGTGTAGTTTGTAGTCTAGCAGACCCATTCTCTGTAGAAACTAC 1 TTGGGTCTGCTAAATCGAAATTTGTAGTTTGTAGTCTAGCAGACCCAATCTCT-TCCAAACCAC * * * ** 486652 TTGGGTCTGCTAAATCG-AGTTTGTAGTTTGTAGTCAAGCAGACCCAATTTCTTCCAATTCAC 1 TTGGGTCTGCTAAATCGAAATTTGTAGTTTGTAGTCTAGCAGACCCAATCTCTTCCAAACCAC * * 486714 TTGGGTCTGCTAAATCGAAAGTTGTAGTTCGTAGTCTAGCAGACCCAA 1 TTGGGTCTGCTAAATCGAAATTTGTAGTTTGTAGTCTAGCAGACCCAA 486762 AAAAATCAAT Statistics Matches: 206, Mismatches: 29, Indels: 4 0.86 0.12 0.02 Matches are distributed among these distances: 62 22 0.11 63 160 0.78 64 24 0.12 ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32 Consensus pattern (63 bp): TTGGGTCTGCTAAATCGAAATTTGTAGTTTGTAGTCTAGCAGACCCAATCTCTTCCAAACCAC Left flanking sequence: Indices 485962 -- 486461 ACATCAAAAAGGTCTAAAAGATCGCGAGGAGGCAGAAGCCGAGAAAGAGCGTCAAGCCTATGCAT CAATCGATTGGCATGACTTTGTAGTTGTTCAGACTGTAGATTTCCAGCCAGGAGATACTTCTCAG CTTCCACCACTATGCACACCAAAGGACGTTGGAGCCCGTATTCTTTTGGAAGCGAGAAATGAAAT GCAAAAGGCGGCGGCTGAAATGCAGGAAATGGATATGGAAGAGAGTGATTCCGATGACGAAGATG CCGTTCAAGGTGCTTTTTTGGAGCATTTTACGTTGAAAATAGACAAAATTCACTTTTTTCCGGTT TTTTCCAACAGTTTTACTTTTAAAATAGATGGAAAACAATGGCAAACTATGAAAACGCTGAAATT CAAATTTAAGTGCTTCCAACCTGGAATATTTAAAATTTTTAGGCGAATTCACATTTTATTTCGTA GAAAACGAACAAAAATCGCAATTTTGAGTTAAAAAGTAAGATTTT Right flanking sequence: Indices 486762 -- 487261 AAAAATCAATTTTTTTTTATTAGCTTTGGCAAATTTTAACTCGGAAAACTAATGAATTTTTGGGA CATGTGAGTTTCTATCCAAATTGATGGTATGAATATCGATATTCTCGGCTGAAAGTGCAAAAACT ACCGTATTCTGACCAACAATTATTGGAATAGAGCACACGTGTCACCCGAAATACGAAAAGTATTT TTTTTTAATTTTTCAAATTTTTAAATTAAAAATGAGTATATTTATATATTTTCAGCACCAGAAGC CCCTGCATTCACTGCTCCGCTGCCACCTACAAAACAGAAAGACGTGATTGTTCGAGATTACGATC CGAAGAGAAATGTGACCCAAAAGCCAAAAGCTGTGGAGAACTGGATCATTTCACCGCTCACCGGA GAGCGTATTCCATCGGATAAGCTCGCCGAGCACGTCAGATACAATACTGTCGATTCACAGTATAA AGAGGACAGAGATCGTCATATTGGAGAAAGAAGCACGGAGGAGCC Found at i:488974 original size:62 final size:62 Alignment explanation
Indices: 488795--489090 Score: 441 Period size: 63 Copynumber: 4.7 Consensus size: 62 488785 CATTTTCAAT * * * * * 488795 TTGGGTCTGCTAAATCGAGTTTGTAGTTTGTAGCCAAGCAGACCCAATTTATTCCAATTCAC 1 TTGGGTCTGCTAAATCGAGTTTGTAGTTTGTAGTCAAGCAGACCCAATCTCTTCAAAATCAC ** * * * * * ** 488857 TTGGGTCTGCTAAATCGAAAGTTGTAGTTCGTAGTCTAGCAGACCCATTCGCTTCACAACAAC 1 TTGGGTCTGCTAAATCG-AGTTTGTAGTTTGTAGTCAAGCAGACCCAATCTCTTCAAAATCAC * 488920 TTGGGTCTGCTAAATCGAGTTTGTAGTTTGTAGTCAAGCAGACCCAATCTCTTCAAAATCCC 1 TTGGGTCTGCTAAATCGAGTTTGTAGTTTGTAGTCAAGCAGACCCAATCTCTTCAAAATCAC ** * * 488982 TTGGGTCTGCTAAATCGAAAGTTGTAGTTTGTAGTCTAGCAGACCCAATCTCTTCAAAATCCC 1 TTGGGTCTGCTAAATCG-AGTTTGTAGTTTGTAGTCAAGCAGACCCAATCTCTTCAAAATCAC 489045 TTGGGTCTGCTAAATCGAGTTTGTAGTTTGTAGTCAAGCAGACCCA 1 TTGGGTCTGCTAAATCGAGTTTGTAGTTTGTAGTCAAGCAGACCCA 489091 TTTTAAAATT Statistics Matches: 202, Mismatches: 30, Indels: 4 0.86 0.13 0.02 Matches are distributed among these distances: 62 95 0.47 63 107 0.53 ACGTcount: A:0.26, C:0.22, G:0.21, T:0.32 Consensus pattern (62 bp): TTGGGTCTGCTAAATCGAGTTTGTAGTTTGTAGTCAAGCAGACCCAATCTCTTCAAAATCAC Left flanking sequence: Indices 488295 -- 488794 ATTTTCCAATTTTTGGCTGAAAATTGAGCTAAAAATTTACAATTTTCCCGTCATAAAACTCACCG AAATTTCGCTTTTCAGTGTTTTTTATGCAAAAAAATTAATCATTTTTCATTTTTCAGACCAACAA ATCAACGAAATCCACCGTCAACACGGATTCGTTGCCGATCCATCAAAGGAAAAGATTGGAGCTCA GCAGGTGCCACGTCATCAATCGACCCAGGGAAATGTGACAATTACTCAAGGAATAACGAATATTC CTGGACAAATGCCATCCGGATGGCCGCCGGTTCCACCAATGGGAATGCCTGGGATGCCGAATCAA GCGGTATGGGATTTTTGAGTTGAAAAATCTCCAAAAAAAAATTCGTTTTTTCATGTAAAATCCTG GAAAAATCGGATATTTCGACAAAAATTGTCAATTTTTGGACCAATTCTCTTTGTATTGCAAAAAC GAATCGAAAAATCCCAAATTAAACATGAAAACTAACATTTTCAAT Right flanking sequence: Indices 489091 -- 489590 TTTTAAAATTAGTTAAAATTGGTTAAAAATCGCGAATTTTTGCTGATTTCAGAGAGATATTGTAT TTCTTTCGAAAAATATAAAGAAGTGGTTTTTTGTGTATTTCTGTTTAAAAAAAAATAAGAAAAAG CTACACCAGGTTAGCTGAAACTATATTTTTGTTGAAAAATAGTGAAAACGCCACCAAAAGTTATC TTTAACCGCGTAATTAGACGATTTTTCGGCGGAATTAACTGGAAACTGTGTTAAGATTAAAATTA CTGAAATTTCCACAAAATTAAATTTTTTTAAATGTAAATTTCATCTCAAACGGACACAGAAATTC CCATTTTCACTGGAAATTCTCATGAAAAGCTCCAATAAAATGCATAAAGCTCTATAATTCCAGCT TCCTCCAATCCGACAAATGGACTTTGGCGGTGGACCTCCAGCGAAGCGTCCTCGTACCGAAGATG ATTTGATACCAGAAGCTGATTGGCTTAAAAAGGTCAACGGAGCAA Found at i:490696 original size:22 final size:22 Alignment explanation
Indices: 490651--490696 Score: 64 Period size: 22 Copynumber: 2.1 Consensus size: 22 490641 TGCTGAAATC * * 490651 AAAAATTAATATGAAAATTCTA 1 AAAAATCAATATGAAAATCCTA * * 490673 AAAAATCGATATGAAAATCTTA 1 AAAAATCAATATGAAAATCCTA 490695 AA 1 AA 490697 GTCCGGCATT Statistics Matches: 20, Mismatches: 4, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 22 20 1.00 ACGTcount: A:0.59, C:0.07, G:0.07, T:0.28 Consensus pattern (22 bp): AAAAATCAATATGAAAATCCTA Left flanking sequence: Indices 490151 -- 490650 TTGGAAAGCAGAAGCTGATGTCTGATGGCCTTTTCGTGAAGGATAATATGAGCTCGGCCTTCTAC AATTTGGCAGATCGGACGGCGATTTATCTGCAAGTGAAGGAGCGTGGAGGAAAAAAGAAGTGATG AGCTATCGATTATTTATTACTCTTATTAATATTTATTTTCTTTCAAACTTTATTCTAAAATTGGA CGCCAATTTTAATTCTTCAAATCTCAACTTTTCTTCCAATAAATTTGTAAAAAAACCGTTCTGTA AATTTGGAGTGGAAAATCTAAAAGTTCAGACATGGCTATACAAAATTCAGATTCAGCATGTCAAA TTACCCCGGGACACTTTTTCTCCGGCTTTTAGCCTTAAATTTCAGAAAATTGGGTTACTGTAGCA CCAAAAATACGCAAACATCGACTACAGTACCCCAAAACACCAAATCTTACTACACTGAAGAGTTT TGGGCTGAAAATTGATGTTTAGGGGTAAACTGGAGTGCTGAAATC Right flanking sequence: Indices 490697 -- 491196 GTCCGGCATTTTCAGACAAATTCTTGATTTTTCTTGGTTCAAATAATAAATTCGAATTTTTTTGT TTATTTTGTTCAGATATCCAGATTTTTTAAATTTTACTTGTTACAGGACATTTTCAGAACAAAAA ATACTAGAAAAACAGAAAAAAATTGCGTTTTCAGTAAAAACAAAACATTTTTTGCACAATCTGAA AATTGTTCGATTGCACCCTAAAAATTGCACTATGTTTTCCAAATTTCTTACATGTGTTTTTGTTT TTTCCCCCACCTAACATAACATTTTAAGAGTTTTTGAAAAAATTTTCGAAAAAAAATTTAACAAA AAATTTTTTTTCACTTTTTTTTTCCGAATTTCTTTTTTTTCCCAGAAACATCTTGTACCCCATAT TTCATTACAGTAGTACTTGTAGTCAGTCTGTCTGTGCATCTGTTTGTCCACCAAAATCAGCAGTT CCCGCCACCTAAAAATAGTTCCCAACAAGTAAGTTCAGCGTCAAA Found at i:491007 original size:12 final size:12 Alignment explanation
Indices: 490987--491010 Score: 41 Period size: 12 Copynumber: 2.0 Consensus size: 12 490977 ATTTTAAGAG * 490987 TTTTTGAAAAAA 1 TTTTCGAAAAAA 490999 TTTTCGAAAAAA 1 TTTTCGAAAAAA 491011 AATTTAACAA Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 12 11 1.00 ACGTcount: A:0.50, C:0.04, G:0.08, T:0.38 Consensus pattern (12 bp): TTTTCGAAAAAA Left flanking sequence: Indices 490487 -- 490986 CACTTTTTCTCCGGCTTTTAGCCTTAAATTTCAGAAAATTGGGTTACTGTAGCACCAAAAATACG CAAACATCGACTACAGTACCCCAAAACACCAAATCTTACTACACTGAAGAGTTTTGGGCTGAAAA TTGATGTTTAGGGGTAAACTGGAGTGCTGAAATCAAAAATTAATATGAAAATTCTAAAAAATCGA TATGAAAATCTTAAAGTCCGGCATTTTCAGACAAATTCTTGATTTTTCTTGGTTCAAATAATAAA TTCGAATTTTTTTGTTTATTTTGTTCAGATATCCAGATTTTTTAAATTTTACTTGTTACAGGACA TTTTCAGAACAAAAAATACTAGAAAAACAGAAAAAAATTGCGTTTTCAGTAAAAACAAAACATTT TTTGCACAATCTGAAAATTGTTCGATTGCACCCTAAAAATTGCACTATGTTTTCCAAATTTCTTA CATGTGTTTTTGTTTTTTCCCCCACCTAACATAACATTTTAAGAG Right flanking sequence: Indices 491011 -- 491510 AATTTAACAAAAAATTTTTTTTCACTTTTTTTTTCCGAATTTCTTTTTTTTCCCAGAAACATCTT GTACCCCATATTTCATTACAGTAGTACTTGTAGTCAGTCTGTCTGTGCATCTGTTTGTCCACCAA AATCAGCAGTTCCCGCCACCTAAAAATAGTTCCCAACAAGTAAGTTCAGCGTCAAAACTGGTATC AAAACTCCCCTTCTTACCACAAAGTAATGTTCTATTTGACATTTCGGAATAAGAAGTTTGCTCCC ATTGTTCAAATAAACTGTATGTGTGCTCCGCGGAGCACACAAACGAAAAAAATTGCCACTGGGAG AGGGGAGCTCAGGGGGTGGAGCACTTTGGCACAAATGAGCACACTTTTTCCTCATTTTTCCGATT TCAAGAGCCTCATATGACTGATGCTGCAGTGTTTAGCTGATTCTTCAAATTTTTTGAAAATTTCG CGGAAAAATGTTTTTTTTGGAAAATTTTTTGGATTCAATTTTTTT Found at i:491022 original size:14 final size:14 Alignment explanation
Indices: 490993--491024 Score: 43 Period size: 14 Copynumber: 2.3 Consensus size: 14 490983 AGAGTTTTTG *** 490993 AAAAAATTTTCGAA 1 AAAAAATTTAACAA 491007 AAAAAATTTAACAA 1 AAAAAATTTAACAA 491021 AAAA 1 AAAA 491025 TTTTTTTTCA Statistics Matches: 15, Mismatches: 3, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 14 15 1.00 ACGTcount: A:0.69, C:0.06, G:0.03, T:0.22 Consensus pattern (14 bp): AAAAAATTTAACAA Left flanking sequence: Indices 490493 -- 490992 TTCTCCGGCTTTTAGCCTTAAATTTCAGAAAATTGGGTTACTGTAGCACCAAAAATACGCAAACA TCGACTACAGTACCCCAAAACACCAAATCTTACTACACTGAAGAGTTTTGGGCTGAAAATTGATG TTTAGGGGTAAACTGGAGTGCTGAAATCAAAAATTAATATGAAAATTCTAAAAAATCGATATGAA AATCTTAAAGTCCGGCATTTTCAGACAAATTCTTGATTTTTCTTGGTTCAAATAATAAATTCGAA TTTTTTTGTTTATTTTGTTCAGATATCCAGATTTTTTAAATTTTACTTGTTACAGGACATTTTCA GAACAAAAAATACTAGAAAAACAGAAAAAAATTGCGTTTTCAGTAAAAACAAAACATTTTTTGCA CAATCTGAAAATTGTTCGATTGCACCCTAAAAATTGCACTATGTTTTCCAAATTTCTTACATGTG TTTTTGTTTTTTCCCCCACCTAACATAACATTTTAAGAGTTTTTG Right flanking sequence: Indices 491025 -- 491524 TTTTTTTTCACTTTTTTTTTCCGAATTTCTTTTTTTTCCCAGAAACATCTTGTACCCCATATTTC ATTACAGTAGTACTTGTAGTCAGTCTGTCTGTGCATCTGTTTGTCCACCAAAATCAGCAGTTCCC GCCACCTAAAAATAGTTCCCAACAAGTAAGTTCAGCGTCAAAACTGGTATCAAAACTCCCCTTCT TACCACAAAGTAATGTTCTATTTGACATTTCGGAATAAGAAGTTTGCTCCCATTGTTCAAATAAA CTGTATGTGTGCTCCGCGGAGCACACAAACGAAAAAAATTGCCACTGGGAGAGGGGAGCTCAGGG GGTGGAGCACTTTGGCACAAATGAGCACACTTTTTCCTCATTTTTCCGATTTCAAGAGCCTCATA TGACTGATGCTGCAGTGTTTAGCTGATTCTTCAAATTTTTTGAAAATTTCGCGGAAAAATGTTTT TTTTGGAAAATTTTTTGGATTCAATTTTTTTTTTCGCCAAAATAT Found at i:491536 original size:16 final size:17 Alignment explanation
Indices: 491507--491542 Score: 51 Period size: 16 Copynumber: 2.2 Consensus size: 17 491497 GATTCAATTT 491507 TTTTTTTCGCCAAAATA 1 TTTTTTTCGCCAAAATA * * 491524 TTTTTTTC-TCAAAATT 1 TTTTTTTCGCCAAAATA 491540 TTT 1 TTT 491543 CTAGTTTTCA Statistics Matches: 17, Mismatches: 2, Indels: 1 0.85 0.10 0.05 Matches are distributed among these distances: 16 9 0.53 17 8 0.47 ACGTcount: A:0.25, C:0.14, G:0.03, T:0.58 Consensus pattern (17 bp): TTTTTTTCGCCAAAATA Left flanking sequence: Indices 491007 -- 491506 AAAAAATTTAACAAAAAATTTTTTTTCACTTTTTTTTTCCGAATTTCTTTTTTTTCCCAGAAACA TCTTGTACCCCATATTTCATTACAGTAGTACTTGTAGTCAGTCTGTCTGTGCATCTGTTTGTCCA CCAAAATCAGCAGTTCCCGCCACCTAAAAATAGTTCCCAACAAGTAAGTTCAGCGTCAAAACTGG TATCAAAACTCCCCTTCTTACCACAAAGTAATGTTCTATTTGACATTTCGGAATAAGAAGTTTGC TCCCATTGTTCAAATAAACTGTATGTGTGCTCCGCGGAGCACACAAACGAAAAAAATTGCCACTG GGAGAGGGGAGCTCAGGGGGTGGAGCACTTTGGCACAAATGAGCACACTTTTTCCTCATTTTTCC GATTTCAAGAGCCTCATATGACTGATGCTGCAGTGTTTAGCTGATTCTTCAAATTTTTTGAAAAT TTCGCGGAAAAATGTTTTTTTTGGAAAATTTTTTGGATTCAATTT Right flanking sequence: Indices 491543 -- 492042 CTAGTTTTCACAAACCTAGTTGGTAATTTATTTGGTCACTTTGAAACACGATTATCATTTTTTAA AAAGTTTAAAAAAATTTTCAAATCCCCGGTAACCTCCATTAAAATTTCACTTAAAAAATTCGATA AAATTTTTTTCCCAAAGTTTTCAAAAAAATTATTTCATCCAATTTTTCCTTTCACGTGAGCTCCC CAGTACGAAATCTATTGAGCGTATGACTGATTTTTGTTGCTTTCAATCTTTTGTTAGGGGTTTTG GAAATTTTGGAAATTAAAATTTTTTATTGGAAAATTTTAAAAAATTTGATTTTTTGGGTGAAAAG TTGAGTGAACTTTTAGGATTTTGGGTTTAAATTTGTTTTATTATTGAGTAATTGGAATTTTACTT TAATTCATTTCTTTGAAATTAAAAAAAATATCGAAAAAAATGTGAGGAAAAAAAATTGAAAATTA TCTTAATTTTTCGCTGAAAATGTTAAACTTCCGATAAAAAATTCA Found at i:492948 original size:16 final size:16 Alignment explanation
Indices: 492929--492970 Score: 56 Period size: 15 Copynumber: 2.7 Consensus size: 16 492919 AATTTTGAAA * 492929 AAAATGTTTTTTTCAC 1 AAAATGTTTTTTCCAC * 492945 AAAATG-TTTTTCCAG 1 AAAATGTTTTTTCCAC * 492960 AAAATTTTTTT 1 AAAATGTTTTT 492971 AAACTCAAAG Statistics Matches: 22, Mismatches: 3, Indels: 2 0.81 0.11 0.07 Matches are distributed among these distances: 15 12 0.55 16 10 0.45 ACGTcount: A:0.33, C:0.10, G:0.07, T:0.50 Consensus pattern (16 bp): AAAATGTTTTTTCCAC Left flanking sequence: Indices 492429 -- 492928 AAACTACATAAGAAATCATTCAAACTTTCAGAAACTTAATATTGGAAAAAAAATTAAAAAAATTT TTTTTTCGTAAAATTTTTTTAAACTCTATTTTGTTCTTACAAATTTTCAGTGATTTTCTCTACTT TTTTTTTGAAATTTTCTAATTAAAAATTTATGTGTTCTATGCTGCAATTTCCGTAACCATGGAGC TCTGTAAAAAACACATTACCCCATTCCCCTTATATAATTTTTTCTGCAAAAATCCAATTATTTTT CTCCAATTTTTACAATTTTTAATATTTTTTGTGATCATAGTACCAAAATGATCAGATCCCAAAAA GTGCATAAAAAATTTTTTTTTTTTAAAAGTGAGAATTACCTATTTTTATGTCAATTTTTATGACA CTTGTGACATTGTTTTTATGGAATGACTTTTGTTTGAAATCATTATTTGAAAAATATATTTTGTA TTGATTGAGCTGAGAAAATTTTAGTTTGAACAGAAAATTTTGAAA Right flanking sequence: Indices 492971 -- 493470 AAACTCAAAGTTAAAATTGTTCAGTTTTTTTTTCACATAAAAGGGAGTTTTGTTTTTGTTTTTTT TATTTTAAAAAATAAACGAGAATTTTAAGATTTCAAATTCAAGAGGAAAAAAAAGAAACTTCAAA AAAATTCTTTAAAACTTTTTTTGAGTTGAAAAAAAATCTATTAAATTTTCAAAAACTTGCTCAGA AAAAATCATAAATGAATTTTAATTAATTATTCTTACTATTCAAAAAAACCGGTGAAAATTAAAAA AAAAGTTCAGATTTGAAAATCTTTCTAAAATTTATAGCGAAATCTCCATCTGAAAGTTTTCTATT TTTACAAAAAATTGAATTCCACGTATATTTGAGGCATATTTTATCAAATATAATAATTTTTTTGA TATTGAGTTTGATTTGAAAAAAATTAATTGAAATTTTTAAAATCTTTTAATTTCAAATAAAAACA TTTCGAAAAAAAGTTTGCAATTATTTCCTAATTTTTTTTGCGAAA Found at i:493901 original size:11 final size:11 Alignment explanation
Indices: 493878--493902 Score: 36 Period size: 11 Copynumber: 2.3 Consensus size: 11 493868 GTTTTCAAAA * 493878 AAAAATTGATT 1 AAAAAATGATT * 493889 AAAAAATGTTT 1 AAAAAATGATT 493900 AAA 1 AAA 493903 TCAATTTTTT Statistics Matches: 12, Mismatches: 2, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 11 12 1.00 ACGTcount: A:0.60, C:0.00, G:0.08, T:0.32 Consensus pattern (11 bp): AAAAAATGATT Left flanking sequence: Indices 493378 -- 493877 AAAAAATTAATTGAAATTTTTAAAATCTTTTAATTTCAAATAAAAACATTTCGAAAAAAAGTTTG CAATTATTTCCTAATTTTTTTTGCGAAATTTTCTTGAAAATCATTTCATTTTTTACTTTAAGCAC ACTATTTTCAGCCAAATGAAACACATTTTCTAGCCTCAAATCACGTTTGGCATTTTCAATTGAGC AGTGAGCATAAAGCACAGAAATTTAGTTAAGAAACAGTTTTTGTTGTTATAAAACCGCAAAAATT GTGTTTAATAGTGATTGATAATACCACAAAATATCTCAATACATGAAAGTTCAAATCGCTAAAAA AAAATTGCGTCAATTTCGGGCGGAGTTTCAGGTGGCTAGAAGCTGACAACTAGAATAGAGGAATA TTTTTGGTTTAGGATGTAGAAAAAAAAATTCCTGAAGTTAAACATTTTTTAGATTTTGTTTTAAA TAGGAAAATAGCTACTTTTATCGGAAAAAACATTAGTTTTCAAAA Right flanking sequence: Indices 493903 -- 494402 TCAATTTTTTCCAAATTATTATTTTTTCAAAATTTAAAATTGTTTTAATGAAAAATAGTTACATT TGTATTAGTTTTTTATTGTTAGGTGAGCTGAAAGGTTTTATTTTCAGGAAAAACATTTATTTTTT TAAACAAAATGTTTTAAATTTAATAATTAATATGTTATTTCATGACCTCATGTTTTTGTGAAATT TAACTATTATTATTATTTTAATTCATTTAAATTAAAATGTATACGCTTAGGTGAAACATTATCTG GAAACTAATAAAACATTTTAAAAATTTCGGAAATTTTTGCATTAAATTTTTTTTCAGAATCAATT TCTCGGTTTTCATATTATTTATTTCGTTGGCCACTCATATTTTATGTAGGCTGACCACACATACA TTATTCAAAAATCAAACATGTGTTAAGAATTAAGTAATTTCGGTGCTCCTAGAAATATTGAAAAT TTTATTGTTTTTCGGAGTGTGCCTAGCACGACGAGTTTGCTGGAT Found at i:494596 original size:11 final size:11 Alignment explanation
Indices: 494576--494605 Score: 39 Period size: 11 Copynumber: 2.7 Consensus size: 11 494566 CCGGATCGCG * 494576 ATGTGTAAATC 1 ATGTGAAAATC * 494587 ATGTGAAAATT 1 ATGTGAAAATC * 494598 ATGGGAAA 1 ATGTGAAA 494606 TTTTTTTTCG Statistics Matches: 16, Mismatches: 3, Indels: 0 0.84 0.16 0.00 Matches are distributed among these distances: 11 16 1.00 ACGTcount: A:0.43, C:0.03, G:0.23, T:0.30 Consensus pattern (11 bp): ATGTGAAAATC Left flanking sequence: Indices 494076 -- 494575 GACCTCATGTTTTTGTGAAATTTAACTATTATTATTATTTTAATTCATTTAAATTAAAATGTATA CGCTTAGGTGAAACATTATCTGGAAACTAATAAAACATTTTAAAAATTTCGGAAATTTTTGCATT AAATTTTTTTTCAGAATCAATTTCTCGGTTTTCATATTATTTATTTCGTTGGCCACTCATATTTT ATGTAGGCTGACCACACATACATTATTCAAAAATCAAACATGTGTTAAGAATTAAGTAATTTCGG TGCTCCTAGAAATATTGAAAATTTTATTGTTTTTCGGAGTGTGCCTAGCACGACGAGTTTGCTGG ATTTGCCGAGTTTGCCGAGCTCGGCAAAAATTGGAAAAATAGATTTGTTGAAGAGCTCGGCTAAT TTTGAAATCTGTCTCAAACCCCTGGTACCACAGATGATTCGCAGTGTGAAAATTATGCATGCTAC ACTCAAATTTCACTTATTTTTCACATTGCGAATAGCCGGATCGCG Right flanking sequence: Indices 494606 -- 495105 TTTTTTTTCGCGATGTTGAAAATATGTATAGACAATTCGTCGAATTTTGCGGTGTGTACATAATT TTAAAATAATTTTATTGGTTCAAGGTGCCTACATAACTTCACACGCGCGAACACAAATTTTACAC ATTTTTTCAAAATTTTGTTGGAAATTTTCTTTTTCAAAATTTGCAAAATTTTACTTTTAACAATT GAAATTATATTTCAATTTAAAAAAAACGCATTTTTTAATCAAGATCTACCAATTTCTATCGCAAA TCACCTGCCAAATTTCTCAATTTTGTTGCCATTTTTTTCTTCAAAAACGTCATGTTTGATCTGAA AATCTGAAAAAATGTTCTTAGTTTTTTTCTTGCTTATATTTTTTTTTGGTGCTGATGTATAAATG GCGGAGCACATTTTGTGCTCCATAGCAACATTTGTGCGGAATTTTATGTGCTTGCCAACCTTTAA AATGTTTTTTTTCTTGTATAGCTTTCTTTGGTTTTGAAATTTTGG Found at i:494750 original size:11 final size:12 Alignment explanation
Indices: 494736--494763 Score: 35 Period size: 12 Copynumber: 2.4 Consensus size: 12 494726 AATTTTACAC 494736 ATTTT-TTCAAA 1 ATTTTGTTCAAA ** 494747 ATTTTGTTGGAA 1 ATTTTGTTCAAA 494759 ATTTT 1 ATTTT 494764 CTTTTTCAAA Statistics Matches: 14, Mismatches: 2, Indels: 1 0.82 0.12 0.06 Matches are distributed among these distances: 11 5 0.36 12 9 0.64 ACGTcount: A:0.29, C:0.04, G:0.11, T:0.57 Consensus pattern (12 bp): ATTTTGTTCAAA Left flanking sequence: Indices 494236 -- 494735 TTCATATTATTTATTTCGTTGGCCACTCATATTTTATGTAGGCTGACCACACATACATTATTCAA AAATCAAACATGTGTTAAGAATTAAGTAATTTCGGTGCTCCTAGAAATATTGAAAATTTTATTGT TTTTCGGAGTGTGCCTAGCACGACGAGTTTGCTGGATTTGCCGAGTTTGCCGAGCTCGGCAAAAA TTGGAAAAATAGATTTGTTGAAGAGCTCGGCTAATTTTGAAATCTGTCTCAAACCCCTGGTACCA CAGATGATTCGCAGTGTGAAAATTATGCATGCTACACTCAAATTTCACTTATTTTTCACATTGCG AATAGCCGGATCGCGATGTGTAAATCATGTGAAAATTATGGGAAATTTTTTTTCGCGATGTTGAA AATATGTATAGACAATTCGTCGAATTTTGCGGTGTGTACATAATTTTAAAATAATTTTATTGGTT CAAGGTGCCTACATAACTTCACACGCGCGAACACAAATTTTACAC Right flanking sequence: Indices 494764 -- 495263 CTTTTTCAAAATTTGCAAAATTTTACTTTTAACAATTGAAATTATATTTCAATTTAAAAAAAACG CATTTTTTAATCAAGATCTACCAATTTCTATCGCAAATCACCTGCCAAATTTCTCAATTTTGTTG CCATTTTTTTCTTCAAAAACGTCATGTTTGATCTGAAAATCTGAAAAAATGTTCTTAGTTTTTTT CTTGCTTATATTTTTTTTTGGTGCTGATGTATAAATGGCGGAGCACATTTTGTGCTCCATAGCAA CATTTGTGCGGAATTTTATGTGCTTGCCAACCTTTAAAATGTTTTTTTTCTTGTATAGCTTTCTT TGGTTTTGAAATTTTGGGAATTTTTATTTATTTTTTAAAGAAAAAACAATTTTGAAAAAACAATT AATTTTAAAATCATTTTATTCTGTTCTAAATGTAAAAAAGAAAGATTGAATTTTTTAGAAATATA TAATTTTTGTTACAAATGTTTTCTCAATGTTAAATTTTTCATAGT Found at i:495768 original size:12 final size:13 Alignment explanation
Indices: 495753--495780 Score: 49 Period size: 13 Copynumber: 2.2 Consensus size: 13 495743 TAAAAAATTA 495753 TTTA-CTGATAAT 1 TTTACCTGATAAT 495765 TTTACCTGATAAT 1 TTTACCTGATAAT 495778 TTT 1 TTT 495781 GATAAAATAT Statistics Matches: 15, Mismatches: 0, Indels: 1 0.94 0.00 0.06 Matches are distributed among these distances: 12 4 0.27 13 11 0.73 ACGTcount: A:0.29, C:0.11, G:0.07, T:0.54 Consensus pattern (13 bp): TTTACCTGATAAT Left flanking sequence: Indices 495253 -- 495752 TTTTTCATAGTGTTAAAAATTAGAAAAAAAGACAAAACTTTGTGAAAAAAAATGTTCAAAAAAAA TTTTTTTTTTCAAGATTAAAAGAAAATTGTTATGTTTCACTATCTTTTTTCCGTTTTTTTTTCTC TATTTTCAGCCAGAATTCCTTCAAAACACCAAATTTTCAGATGAAAAAAGACGCCGAAAACGAGA ACCTGCTTCACGCCTACGAACACGATGAGCAGAGCTCAAAGTACTCAGTTTTAAAAAAAATTTCC TTCAAAATTATACAAAATTTTCAGATATTTTATTAAACCCGACTCTAGATACTCAATAGACGATG ATATTTCTGTGAAAATTGATGGAAAACAGCTGGAAGTTAGGAAATGGCCTACGCTTTTGGCTACT GCTATGGTGGTAAGTTTGGGAAAAATTAGGAGTTTTAAAAGTTTAAAATAATAAAACAAATAAAT TAATGATTTGTTTGTCAAGTTCAAATGTAAAACTTTAAAAAATTA Right flanking sequence: Indices 495781 -- 496280 GATAAAATATTTTCAAACTCGAAATCCTCATCTTTTTTTACCCATACTTATTTTTTCTAGGTTTC TAGTTAATCATTCAAAAATTCTGGGTTACTGTAGCTTCATAAGTACGCAAACACCGACGCACACC AGATCTCACGACGAAATGCAGAAAACTCTGAAAAATCCGATTCTGGGGTAATTTTTGACGTAGAG TTTATTGAAGCTATCCAAAAATTTGTAAAAATCAGTTTTAACCTACGAAATCACTAAAATTTCGT AACAATTATTTTTATTTTTCCCAAAAATTGTTACCTTGAATATTTCCGGTTTGATAGTTGAACAT GATCTCTTATCAGAGGTCTGCGGTTTTCACAATTTATTTTTTATCAAATTTTTTTCAATTTCTAT TGCATTTCACAACACCACACAATAAGTGTGCCTAGTCCTTAAAGTATATTAAGTTTTAAAATAAC ATTTTTAACGAGGGGAAAAACTTGTGGTTTCTGAAATTGAAAATT Found at i:496166 original size:10 final size:12 Alignment explanation
Indices: 496141--496163 Score: 39 Period size: 12 Copynumber: 2.0 Consensus size: 12 496131 TTCACAATTT 496141 ATTTTTTATCAA 1 ATTTTTTATCAA 496153 ATTTTTT-TCAA 1 ATTTTTTATCAA 496164 TTTCTATTGC Statistics Matches: 11, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 11 4 0.36 12 7 0.64 ACGTcount: A:0.30, C:0.09, G:0.00, T:0.61 Consensus pattern (12 bp): ATTTTTTATCAA Left flanking sequence: Indices 495641 -- 496140 CTGCTATGGTGGTAAGTTTGGGAAAAATTAGGAGTTTTAAAAGTTTAAAATAATAAAACAAATAA ATTAATGATTTGTTTGTCAAGTTCAAATGTAAAACTTTAAAAAATTATTTACTGATAATTTTACC TGATAATTTTGATAAAATATTTTCAAACTCGAAATCCTCATCTTTTTTTACCCATACTTATTTTT TCTAGGTTTCTAGTTAATCATTCAAAAATTCTGGGTTACTGTAGCTTCATAAGTACGCAAACACC GACGCACACCAGATCTCACGACGAAATGCAGAAAACTCTGAAAAATCCGATTCTGGGGTAATTTT TGACGTAGAGTTTATTGAAGCTATCCAAAAATTTGTAAAAATCAGTTTTAACCTACGAAATCACT AAAATTTCGTAACAATTATTTTTATTTTTCCCAAAAATTGTTACCTTGAATATTTCCGGTTTGAT AGTTGAACATGATCTCTTATCAGAGGTCTGCGGTTTTCACAATTT Right flanking sequence: Indices 496164 -- 496663 TTTCTATTGCATTTCACAACACCACACAATAAGTGTGCCTAGTCCTTAAAGTATATTAAGTTTTA AAATAACATTTTTAACGAGGGGAAAAACTTGTGGTTTCTGAAATTGAAAATTAAAATATTTCAAG TAGTTTAATTTTAAAAATCAGAAAAAAAACCCCATTCTTTGTACATTTTGTCGAAAATGGTGCTT TCAAACTTTTTTTTAGAAAATAAAATAAATGCGTTAGTTTTGGATAATTCTAGTTTCTAAAAAAC AGTTTCAGCACCTTAAATTACACCTAAACTCAGGTTTTTTGCCCCTTTTGTGCATTTTGTCGTAA ATTTCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCGGTGTTTGCGTACTTATGAAGCTA CAGTAACCCGGTAAATTCAAAAAACTAGCTGGGGACCCGGAAAAAAAATATTAAAGGTAAAATGA TACACTGAGTTCTATTTTAATACTTCTATTTTTGTAAAATATAGA Found at i:498462 original size:11 final size:11 Alignment explanation
Indices: 498447--498497 Score: 53 Period size: 11 Copynumber: 4.9 Consensus size: 11 498437 AATTTTGAGG * 498447 AAAAAAATATC 1 AAAAAAAAATC * * 498458 CAAAAAAAATT 1 AAAAAAAAATC 498469 AAAAAAAAA-- 1 AAAAAAAAATC * 498478 AAAAAAAAA-A 1 AAAAAAAAATC 498488 AAAAAAAAAT 1 AAAAAAAAAT 498498 TTTAAATTTT Statistics Matches: 34, Mismatches: 4, Indels: 4 0.81 0.10 0.10 Matches are distributed among these distances: 9 9 0.26 10 9 0.26 11 16 0.47 ACGTcount: A:0.86, C:0.04, G:0.00, T:0.10 Consensus pattern (11 bp): AAAAAAAAATC Left flanking sequence: Indices 497947 -- 498446 CGTAAATGAGTCGCTACTCAGCCAATTACCAAAAGGGTCATAACTTTGTTCATGGTGAAGCTACA ACTTTTTTTAAAAGACAAAGTTGTAGATCATAAAAATTTGCGTGAAAAGATATACAATTTAACGC ATTGAAATGTGATACGGAATCATTAAAACTGAATAGCGACTCAAATTTAAAATAATTATAACTTT CTTCAAATTAACGTTAGAGACATGGTTCAAAAAGCGTCATGTAGAAAATTGGATTTTGTTTCCCA TTTTTTAACTGAAATTTCCCAATTTCCAGCCACTCTCTCATATCTACCACGTTCTGGCTTTCACA GCACTTTTCTCGATTCTCCTCGCCCGTAAGCACTATATGATCGATATAGTGTTAGGATATACAGT ATCTACCAGAATTTTTATGGAATATCACGCACTTGCGGCTTCATATCATAACAGGACGTTTGAAA CTAATCCATTGGCTTGGTAAGTGAGAGAAATTTGAAATTTTGAGG Right flanking sequence: Indices 498498 -- 498997 TTTAAATTTTCAAATTTTCAAGGTCCTTCTGGTCATTTTTTATCCCAATTTTTGAATGTGATGCT CCTGCAAATATGCACAATCACCTGCTTCTCTACAACCGATCAACGAGTTCCAAAAACGTGTCGAC ATTGAAAAAATCACGAAGATCTTTCGAATAAATTAGGCTGAACAATTTATTTTTGCTAACAAAAA TTGAATAAAAAATCTCCAATTTGATTGTACAATTTGTTTTTATTAATAAATTTTGTGAAATGAAT TTTGAATTTTTGAAGAAAAAAAAAATCAATTTTTCAGAATTTTTTCATTAATTTCAGATTTTAAA GTGCCGAGGCTTATTTATTTGTTCGTATCACTTTTTCATTGGAAGCAGAGCCAGATTTTACTCCT AGAACCAAGGTCTTACGCTAAAATCTGCAAATTATCGTAAACTCAGGCGTCTAGGTACGCAGGGG TGTCAGGGTGCAAAAAAATCCCGCATTTCTTGTAGATCAAACCGT Found at i:498465 original size:13 final size:12 Alignment explanation
Indices: 498447--498490 Score: 51 Period size: 12 Copynumber: 3.6 Consensus size: 12 498437 AATTTTGAGG ** 498447 AAAAAAATATCCA 1 AAAAAAAT-TAAA 498460 AAAAAAATTAAA 1 AAAAAAATTAAA ** 498472 AAAAAAAAAAAA 1 AAAAAAATTAAA 498484 AAAAAAA 1 AAAAAAA 498491 AAAAAATTTT Statistics Matches: 27, Mismatches: 4, Indels: 1 0.84 0.12 0.03 Matches are distributed among these distances: 12 19 0.70 13 8 0.30 ACGTcount: A:0.86, C:0.05, G:0.00, T:0.09 Consensus pattern (12 bp): AAAAAAATTAAA Left flanking sequence: Indices 497947 -- 498446 CGTAAATGAGTCGCTACTCAGCCAATTACCAAAAGGGTCATAACTTTGTTCATGGTGAAGCTACA ACTTTTTTTAAAAGACAAAGTTGTAGATCATAAAAATTTGCGTGAAAAGATATACAATTTAACGC ATTGAAATGTGATACGGAATCATTAAAACTGAATAGCGACTCAAATTTAAAATAATTATAACTTT CTTCAAATTAACGTTAGAGACATGGTTCAAAAAGCGTCATGTAGAAAATTGGATTTTGTTTCCCA TTTTTTAACTGAAATTTCCCAATTTCCAGCCACTCTCTCATATCTACCACGTTCTGGCTTTCACA GCACTTTTCTCGATTCTCCTCGCCCGTAAGCACTATATGATCGATATAGTGTTAGGATATACAGT ATCTACCAGAATTTTTATGGAATATCACGCACTTGCGGCTTCATATCATAACAGGACGTTTGAAA CTAATCCATTGGCTTGGTAAGTGAGAGAAATTTGAAATTTTGAGG Right flanking sequence: Indices 498491 -- 498990 AAAAAATTTTAAATTTTCAAATTTTCAAGGTCCTTCTGGTCATTTTTTATCCCAATTTTTGAATG TGATGCTCCTGCAAATATGCACAATCACCTGCTTCTCTACAACCGATCAACGAGTTCCAAAAACG TGTCGACATTGAAAAAATCACGAAGATCTTTCGAATAAATTAGGCTGAACAATTTATTTTTGCTA ACAAAAATTGAATAAAAAATCTCCAATTTGATTGTACAATTTGTTTTTATTAATAAATTTTGTGA AATGAATTTTGAATTTTTGAAGAAAAAAAAAATCAATTTTTCAGAATTTTTTCATTAATTTCAGA TTTTAAAGTGCCGAGGCTTATTTATTTGTTCGTATCACTTTTTCATTGGAAGCAGAGCCAGATTT TACTCCTAGAACCAAGGTCTTACGCTAAAATCTGCAAATTATCGTAAACTCAGGCGTCTAGGTAC GCAGGGGTGTCAGGGTGCAAAAAAATCCCGCATTTCTTGTAGATC Found at i:514359 original size:12 final size:12 Alignment explanation
Indices: 514344--514376 Score: 45 Period size: 12 Copynumber: 2.8 Consensus size: 12 514334 TTGTATTTTT 514344 AAAATTTTTCTA 1 AAAATTTTTCTA * * 514356 AAAAATTTTCTT 1 AAAATTTTTCTA * 514368 CAAATTTTT 1 AAAATTTTT 514377 ATGCATACAT Statistics Matches: 17, Mismatches: 4, Indels: 0 0.81 0.19 0.00 Matches are distributed among these distances: 12 17 1.00 ACGTcount: A:0.39, C:0.09, G:0.00, T:0.52 Consensus pattern (12 bp): AAAATTTTTCTA Left flanking sequence: Indices 513844 -- 514343 TCTATTGTTATGATAATAAGGTTGTAACAGACCCCTCTTGGATGGACAGACCCTTTATGGTACAT GGATAATGGGCAGTTTGCAGATAATTTCAAACATGGCACGAAAATTACTGGAACTTTTAAATAAA TATTTTTACTTCTTCAGAAACCTCATTGGATATAGTTTTAAAAATTGAAAATGTAGCAAAATTAA AAAAAAAACCAAATTTCCTTGAAATTTTTACTTAGACTCACATTTTAGATGAGCTTTCAGGAATT TGGAGTATTAAAATACCGAAAATTTTCTTCAAATTTGCTAGTCAACAATGAAATTATCCATGGAA CCCGAATTTTTGCATTTCAAGCATTAATGTTATTTTGTATTTTTGAATAAAATCTGAGTTTTCCA ATTTTGCAAGACTATTGTATTACTTAAAGCGAAAATAATAGTGGGGATTTTGTAGAGAAAACAGA AAAAAATCCTAAAAATTAAAAAAAAAACATTTTTCTTGTATTTTT Right flanking sequence: Indices 514377 -- 514876 ATGCATACATATACTCATTATATAATACTTTAAATGTGAAATTTGAAAAGCTCTTCGAAAAATTT TAACTTTAATTGAAAACTTTAGGATTTTGAATTTTCCTTGTAATTGGGGGGTTTTTTTTTGAAAT TTAAATTTTTTTAATGAATTCATTGGTTTTTTTAAATGTCTAGAACTAACAAGCTATCTAAAAAC AACAAATTGATTAAAAAATAAAACAATTCCAATAAAAAATTTGAAAAATTCAAAAAAAAAGTTTT GTTTAAAAATTTCAACTCCTTTTAACTTTGCTCAAAGTTACCCTATCTACTTAATTTTTTGTTAA ATTTTTTCTCCAAAATGTCGAAAACCACAAATATTAGTAAAACTAATCAGAATCCTACAAGTAGG CCCAGATATCTCTCAGATCATAAACCATTATCTGTGAGAACCATAAAAGGAGCCATAAAATGCGT TGCGCGCAAGAGAGAGAAGAAGAATGTGTGATGATAATTAGTCAA Found at i:516050 original size:12 final size:11 Alignment explanation
Indices: 516022--516050 Score: 35 Period size: 12 Copynumber: 2.5 Consensus size: 11 516012 CACACTTATA * 516022 TATTCTCAAGC 1 TATTCTCAACC * 516033 TATTCTCTAACG 1 TATTCTC-AACC 516045 TATTCT 1 TATTCT 516051 TCTTTTAATT Statistics Matches: 15, Mismatches: 2, Indels: 1 0.83 0.11 0.06 Matches are distributed among these distances: 11 7 0.47 12 8 0.53 ACGTcount: A:0.24, C:0.24, G:0.07, T:0.45 Consensus pattern (11 bp): TATTCTCAACC Left flanking sequence: Indices 515522 -- 516021 ATTTTGGAATATTCGAAAAAACTAAGGTTTTCAATAATTTTTTATTTGTTAAAACTGTGTTTTAA TTACATTTCATGTAAGTTTGAAATTAAAAAAAAATTTCAGCCTTGAAATTTCAATTGAAAAATCC AGAAAAATAGCCTCACAAAATTCAATAAATTTGGTGTAAAAACGTAAGTTTTGATGATTTTTATT TTGATTTTTTTGTAAAAAAACATAACATTGCTTTAAAGTCAAAAATAAACAGGAAATATTGATTT TCAGCAAAGTTTAAAAATTCTAGATTATTTTTAACAACTCCTAAAATTTTCAAAATTATAAATTC ATTTATTTTTAAAACAATCTTAAATTTAAGAATCTAAAGTATTCAATTAAAATTATGGAACATCT GGACCCCAGTTTTCCCTTCAGAAGCTCCTCCCACCTCCCTTTCTGCAATTGGCCAGCTCCGCCCA TTTACTGGCGGAGGGGTGCTTGTGAAATCGGAATTCACACTTATA Right flanking sequence: Indices 516051 -- 516550 TCTTTTAATTCGGGGAAAATATCTGAAAATTGTCAGAAAAATAACTGGAAATTTTTATAGTCCCG GAGCTTCTTATTCCATAAGATACTAAATTTTGAAAAAAAATGTCAAAAAGATGTGCAAGTGATAG AGATGATAAAGATTCGGAGCCCGTTAAGGTAAGCTTGGCTGAAAGTTTTTTAAAAGGATTTGTGG AGTTTTGAACTATTTGACTGAAATATTAAACAAGTGTTTTCTGGCAGAAAAGGTGTATTTTCAGC GTTAAAACTGCTAAAACCCGGTTTGAAGCTATCTAAAAAGACAAGAAAATCAATAATAAAGTTAT CTGGAAAGATTTGTAATTTCTCGTATTTTAAGGGAATTTCTCTTACCATTTTTTGTAATAAAACA CCTCAAAACTCCCAAAACGCCTCCAAAACCCAAATTTTCATTCCAGAAACCCCGTTTTTCGATTG CCAACATTCTTGATGAAGTAGAAGACGAGGAAGATGTGGAAGTTG Found at i:517249 original size:11 final size:11 Alignment explanation
Indices: 517226--517249 Score: 34 Period size: 11 Copynumber: 2.2 Consensus size: 11 517216 TTTTTCTTGG * 517226 TTTATTAATAT 1 TTTATTAAAAT * 517237 TTTATTATAAT 1 TTTATTAAAAT 517248 TT 1 TT 517250 GTAACCTATA Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 11 11 1.00 ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67 Consensus pattern (11 bp): TTTATTAAAAT Left flanking sequence: Indices 516726 -- 517225 CTTTCTTGGATTCAAATGAACAAAGTTATATGAAACAACAGCGTGGCTTTAATATTGGCTGAGTA GCGGCTCAATGACTCCGTATCACACTAATTCATACACAAATCGACGCAAAATTTTAGGATCTCAA ACTTAGTCTTTTTATCAAAACTCTAGCGTCAAAATGAGCACATATATGGCGATTTGAAATATTTG GCTGAGTAGCGACCTTTTTTTGCTGAAAAGCCCAAAATTTTCAATAAAATTTGGCAAGATTTGAG GAAACTCCGTATCACCTGGGTCGCTACTCAGCAAATTATCAAAATTGTTTTAGCTTTGTTCATTT TGGTCATAAAGAATTGAAACAAAATACATTGTGTAGCTCATAAAAATTTGCGTCGATTCGTGTTA AATTCGAATTTTATACGGAGTCCTTGAGTCGCTACTCAGCCAATATTGACAAAAAACGAGAGTTA GCCCACAATTTTCAAATTTTTTGTCTAAAAACTGTTTTTTCTTGG Right flanking sequence: Indices 517250 -- 517749 GTAACCTATATCATAAAAATAATTTTTGTTTTTAATAAAAATGAAAAAACATTTTTCAGGAAGGA AATCTACCAATCGAGTGCAAATTAGAGGGGTCCGAGCTATGGGCGAAATTCTTCGATTTGGGCAC AGAGATGATTATCACAAAAAGTGGAAGGTAAGATTTATATTACAAAGTTAACGGGAAATTGCAAA AATCAAAAAAAAAAAAAAGAAATTTAAAATTTAGATAATTTTGAGATTTTGATAATGGAAAATTT TTTCTTAAAAAATACGATTTTTTTTTTTGAAAATTTGAAAATTTCTTTTTTTTGGAAAAAGAAAC GGATAAACCCTTTTATCTAAATTACTTGTTTCTTTTTCTATTTTGTTACCCCATTTCGAGCTAAT TTGTGAAAAAAGGAAGATCCTCTTTGACCCTCTTTATGGACCCCCATAAAGGAGGGGTGTATACT AGTTGTCACTTAGTTAAATGAGCTTTTTTCGCGAATTTTCGGAAC Found at i:517573 original size:24 final size:24 Alignment explanation
Indices: 517526--517573 Score: 59 Period size: 25 Copynumber: 2.0 Consensus size: 24 517516 AAAAAATACG ** 517526 ATTTTTTTTTTTGAAAATTTGAAA 1 ATTTTTTTTTTTGAAAATAAGAAA * 517550 ATTTCTTTTTTTTGGAAA-AAGAAA 1 ATTT-TTTTTTTTGAAAATAAGAAA 517574 CGGATAAACC Statistics Matches: 20, Mismatches: 3, Indels: 2 0.80 0.12 0.08 Matches are distributed among these distances: 24 8 0.40 25 12 0.60 ACGTcount: A:0.35, C:0.02, G:0.10, T:0.52 Consensus pattern (24 bp): ATTTTTTTTTTTGAAAATAAGAAA Left flanking sequence: Indices 517026 -- 517525 AAAATTGTTTTAGCTTTGTTCATTTTGGTCATAAAGAATTGAAACAAAATACATTGTGTAGCTCA TAAAAATTTGCGTCGATTCGTGTTAAATTCGAATTTTATACGGAGTCCTTGAGTCGCTACTCAGC CAATATTGACAAAAAACGAGAGTTAGCCCACAATTTTCAAATTTTTTGTCTAAAAACTGTTTTTT CTTGGTTTATTAATATTTTATTATAATTTGTAACCTATATCATAAAAATAATTTTTGTTTTTAAT AAAAATGAAAAAACATTTTTCAGGAAGGAAATCTACCAATCGAGTGCAAATTAGAGGGGTCCGAG CTATGGGCGAAATTCTTCGATTTGGGCACAGAGATGATTATCACAAAAAGTGGAAGGTAAGATTT ATATTACAAAGTTAACGGGAAATTGCAAAAATCAAAAAAAAAAAAAAGAAATTTAAAATTTAGAT AATTTTGAGATTTTGATAATGGAAAATTTTTTCTTAAAAAATACG Right flanking sequence: Indices 517574 -- 518073 CGGATAAACCCTTTTATCTAAATTACTTGTTTCTTTTTCTATTTTGTTACCCCATTTCGAGCTAA TTTGTGAAAAAAGGAAGATCCTCTTTGACCCTCTTTATGGACCCCCATAAAGGAGGGGTGTATAC TAGTTGTCACTTAGTTAAATGAGCTTTTTTCGCGAATTTTCGGAACATTGTAGGTGGGAAAACAC AAAAAAATGGTTAGTTAAAAAAAAGGGAAATTAGGAAAAAACTTTTTTTTTGAAATTTACAAAAC AATTTTTTGAGTCAAATTTTTTTCTGAAAATCTATAACAATTACTTTTTGAAGGCTTTTTTAAAT GAATTATTAATTTTTTGTACTGTTTTTAAATATTTACTTTAAAGTTTATAAGCCAAATCGTTGAA AATTGTAAAAATTAATTTTTAAAAAGTTACTTTTTAATTTCATTAAAATATTTTGAGAGAATTTA AATTAAAAAAACAAATTTTTAAAATTTTGCATTTTTAGGAAATTC Found at i:517988 original size:14 final size:15 Alignment explanation
Indices: 517969--518000 Score: 50 Period size: 15 Copynumber: 2.2 Consensus size: 15 517959 TTGAAAATTG 517969 TAAAAA-TTAATTTT 1 TAAAAAGTTAATTTT * 517983 TAAAAAGTTACTTTT 1 TAAAAAGTTAATTTT 517998 TAA 1 TAA 518001 TTTCATTAAA Statistics Matches: 16, Mismatches: 1, Indels: 1 0.89 0.06 0.06 Matches are distributed among these distances: 14 6 0.38 15 10 0.62 ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47 Consensus pattern (15 bp): TAAAAAGTTAATTTT Left flanking sequence: Indices 517469 -- 517968 TAAAATTTAGATAATTTTGAGATTTTGATAATGGAAAATTTTTTCTTAAAAAATACGATTTTTTT TTTTGAAAATTTGAAAATTTCTTTTTTTTGGAAAAAGAAACGGATAAACCCTTTTATCTAAATTA CTTGTTTCTTTTTCTATTTTGTTACCCCATTTCGAGCTAATTTGTGAAAAAAGGAAGATCCTCTT TGACCCTCTTTATGGACCCCCATAAAGGAGGGGTGTATACTAGTTGTCACTTAGTTAAATGAGCT TTTTTCGCGAATTTTCGGAACATTGTAGGTGGGAAAACACAAAAAAATGGTTAGTTAAAAAAAAG GGAAATTAGGAAAAAACTTTTTTTTTGAAATTTACAAAACAATTTTTTGAGTCAAATTTTTTTCT GAAAATCTATAACAATTACTTTTTGAAGGCTTTTTTAAATGAATTATTAATTTTTTGTACTGTTT TTAAATATTTACTTTAAAGTTTATAAGCCAAATCGTTGAAAATTG Right flanking sequence: Indices 518001 -- 518500 TTTCATTAAAATATTTTGAGAGAATTTAAATTAAAAAAACAAATTTTTAAAATTTTGCATTTTTA GGAAATTCTAATTTTTTCACAAATTAAAAAAAACTGAATTTTACAAATAACGCAAATTTTTAAAT TATCTAAATTCAGAGTATTATTTTTCAATAATGGTTTAAAAAATAGTATCCTATAAAAAACAATA ACTATTCAATTCAAACACCTAACATACCCCAGGCACGGCCCAAAACCAAATTTTAAGCGAAGATC GTGGTAAAATTTTTTTGGACGATTTCCAAAATTATGGAAAAAATTTTTTGTAAAAATTTTTGAAA ATTCGAATTTCAAAATATTTTCAACAAGTTGAAATCTCTACAATTCCACCAAATTTTTAAAAATA TTACTACAACCACGTTTTCTCAAAAAAAATCAATAACCCGTCCCGATCCGAACACCTACAGTACC CCCTGTCAAAGGTACCCCGCCCAATCAATTTGTGTGGTTTGTAGG Found at i:518315 original size:12 final size:11 Alignment explanation
Indices: 518300--518328 Score: 42 Period size: 12 Copynumber: 2.5 Consensus size: 11 518290 AATTATGGAA 518300 AAAATTTTTTG 1 AAAATTTTTTG * 518311 TAAAAATTTTTG 1 -AAAATTTTTTG 518323 AAAATT 1 AAAATT 518329 CGAATTTCAA Statistics Matches: 15, Mismatches: 2, Indels: 1 0.83 0.11 0.06 Matches are distributed among these distances: 11 5 0.33 12 10 0.67 ACGTcount: A:0.45, C:0.00, G:0.07, T:0.48 Consensus pattern (11 bp): AAAATTTTTTG Left flanking sequence: Indices 517800 -- 518299 TAGGAAAAAACTTTTTTTTTGAAATTTACAAAACAATTTTTTGAGTCAAATTTTTTTCTGAAAAT CTATAACAATTACTTTTTGAAGGCTTTTTTAAATGAATTATTAATTTTTTGTACTGTTTTTAAAT ATTTACTTTAAAGTTTATAAGCCAAATCGTTGAAAATTGTAAAAATTAATTTTTAAAAAGTTACT TTTTAATTTCATTAAAATATTTTGAGAGAATTTAAATTAAAAAAACAAATTTTTAAAATTTTGCA TTTTTAGGAAATTCTAATTTTTTCACAAATTAAAAAAAACTGAATTTTACAAATAACGCAAATTT TTAAATTATCTAAATTCAGAGTATTATTTTTCAATAATGGTTTAAAAAATAGTATCCTATAAAAA ACAATAACTATTCAATTCAAACACCTAACATACCCCAGGCACGGCCCAAAACCAAATTTTAAGCG AAGATCGTGGTAAAATTTTTTTGGACGATTTCCAAAATTATGGAA Right flanking sequence: Indices 518329 -- 518828 CGAATTTCAAAATATTTTCAACAAGTTGAAATCTCTACAATTCCACCAAATTTTTAAAAATATTA CTACAACCACGTTTTCTCAAAAAAAATCAATAACCCGTCCCGATCCGAACACCTACAGTACCCCC TGTCAAAGGTACCCCGCCCAATCAATTTGTGTGGTTTGTAGGGAATATGGTTGTATTTGTAATTG GTTTCATCTTTTTGAATGTCTTTTTTTTCTTCGTCGTCTTCAACATTTCTCTGAATACCCATCAA ATACCACATTCATCAATTCAGAAGATGTAGTAGTACGGAGGGCTGTGATTGAATTCTGTCTTTGA TGGGTCACTTGGGAATTAGGATTACTGTAGAATAGATAATGATTTTGGTGATGGGAAATGTCAAG TAATATAGAAAAATAATTAGAGTACAAAATATTGAAAATATGATGAAAAAATGTCAATTTTGAAG AAAGTTATGATGGTTTAAAAAAATTTGAAAAAAAATTGGAAATTT Found at